RNA–Protein interactions for RNA: ENST00000539417.6

RPAIN-206, Transcript of RPA interacting protein, humanhuman

TSL 2

Gene RPAIN, Length 1,471 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAIN-206ENST00000539417 MAML1Q92585 1016 aa15.96■□□□□ 0.14
RPAIN-206ENST00000539417 HAUS1Q96CS2 278 aa15.96■□□□□ 0.14
RPAIN-206ENST00000539417 CALR3Q96L12 384 aaKnown RBP15.96■□□□□ 0.14
RPAIN-206ENST00000539417 ZNF599Q96NL3 588 aa15.96■□□□□ 0.14
RPAIN-206ENST00000539417 OLFM3Q96PB7 478 aa15.96■□□□□ 0.14
RPAIN-206ENST00000539417 PSKH2Q96QS6 385 aa15.96■□□□□ 0.14
RPAIN-206ENST00000539417 MAK16Q9BXY0 300 aaKnown RBP15.96■□□□□ 0.14
RPAIN-206ENST00000539417 EIF2B4Q9UI10 523 aaKnown RBP15.96■□□□□ 0.14
RPAIN-206ENST00000539417 GGT7Q9UJ14 662 aa15.96■□□□□ 0.14
RPAIN-206ENST00000539417 AMFRQ9UKV5 643 aa15.96■□□□□ 0.14
RPAIN-206ENST00000539417 ITM2BQ9Y287 266 aa15.96■□□□□ 0.14
RPAIN-206ENST00000539417 PPP2R2CQ9Y2T4 447 aa15.96■□□□□ 0.14
RPAIN-206ENST00000539417 DYNC1LI1Q9Y6G9 523 aaKnown RBP15.96■□□□□ 0.14
RPAIN-206ENST00000539417 DOCK9Q9BZ29 2069 aa15.96■□□□□ 0.14
RPAIN-206ENST00000539417 PLXNA2O75051 1894 aa15.95■□□□□ 0.14
RPAIN-206ENST00000539417 DNAH14Q0VDD8 3507 aa15.95■□□□□ 0.14
RPAIN-206ENST00000539417 C16orf96A6NNT2 1141 aa15.95■□□□□ 0.14
RPAIN-206ENST00000539417 WNT9AO14904 365 aa15.95■□□□□ 0.14
RPAIN-206ENST00000539417 CR2P20023 1033 aa15.95■□□□□ 0.14
RPAIN-206ENST00000539417 ITGB7P26010 798 aa15.95■□□□□ 0.14
RPAIN-206ENST00000539417 DEKP35659 375 aaKnown RBP15.95■□□□□ 0.14
RPAIN-206ENST00000539417 RFTN1Q14699 578 aaPredicted RBP15.95■□□□□ 0.14
RPAIN-206ENST00000539417 IFI16Q16666 785 aaKnown RBP15.95■□□□□ 0.14
RPAIN-206ENST00000539417 ODF2Q5BJF6 829 aa15.95■□□□□ 0.14
RPAIN-206ENST00000539417 TFDP3Q5H9I0 405 aa15.95■□□□□ 0.14
RPAIN-206ENST00000539417 PEAR1Q5VY43 1037 aaPredicted RBP15.95■□□□□ 0.14
RPAIN-206ENST00000539417 KIAA0895LQ68EN5 471 aa15.95■□□□□ 0.14
RPAIN-206ENST00000539417 RNF10Q8N5U6 811 aaKnown RBP15.95■□□□□ 0.14
RPAIN-206ENST00000539417 OR2T34Q8NGX1 318 aa15.95■□□□□ 0.14
RPAIN-206ENST00000539417 C1orf216Q8TAB5 229 aa15.95■□□□□ 0.14
RPAIN-206ENST00000539417 DNASE2BQ8WZ79 361 aa15.95■□□□□ 0.14
RPAIN-206ENST00000539417 SNX19Q92543 992 aa15.95■□□□□ 0.14
RPAIN-206ENST00000539417 HDAC11Q96DB2 347 aa15.95■□□□□ 0.14
RPAIN-206ENST00000539417 TSGA13Q96PP4 275 aa15.95■□□□□ 0.14
RPAIN-206ENST00000539417 HDAC8Q9BY41 377 aa15.95■□□□□ 0.14
RPAIN-206ENST00000539417 CEP41Q9BYV8 373 aa15.95■□□□□ 0.14
RPAIN-206ENST00000539417 NT5MQ9NPB1 228 aa15.95■□□□□ 0.14
RPAIN-206ENST00000539417 SEPT3Q9UH03 358 aa15.95■□□□□ 0.14
RPAIN-206ENST00000539417 PCDHGA5Q9Y5G8 931 aa15.95■□□□□ 0.14
RPAIN-206ENST00000539417 GVINP1Q7Z2Y8 2422 aa15.95■□□□□ 0.14
RPAIN-206ENST00000539417 ANKRD36A6QL64 1941 aa15.94■□□□□ 0.14
RPAIN-206ENST00000539417 FAM186AA6NE01 2351 aa15.94■□□□□ 0.14
RPAIN-206ENST00000539417 TBC1D3DA0A087WVF3 549 aa15.94■□□□□ 0.14
RPAIN-206ENST00000539417 TBC1D3IA0A087WXS9 549 aa15.94■□□□□ 0.14
RPAIN-206ENST00000539417 TBC1D3EA0A087X179 549 aa15.94■□□□□ 0.14
RPAIN-206ENST00000539417 TBC1D3KA0A087X1G2 549 aa15.94■□□□□ 0.14
RPAIN-206ENST00000539417 CCDC66A2RUB6 948 aa15.94■□□□□ 0.14
RPAIN-206ENST00000539417 TBC1D3FA6NER0 549 aaPredicted RBP15.94■□□□□ 0.14
RPAIN-206ENST00000539417 MEI4A8MW99 385 aa15.94■□□□□ 0.14
RPAIN-206ENST00000539417 TBC1D3LB9A6J9 549 aa15.94■□□□□ 0.14
RPAIN-206ENST00000539417 KCNK1O00180 336 aa15.94■□□□□ 0.14
RPAIN-206ENST00000539417 MATN3O15232 486 aa15.94■□□□□ 0.14
RPAIN-206ENST00000539417 GDF9O60383 454 aa15.94■□□□□ 0.14
RPAIN-206ENST00000539417 PRKCGP05129 697 aa15.94■□□□□ 0.14
RPAIN-206ENST00000539417 TBC1D3HP0C7X1 549 aa15.94■□□□□ 0.14
RPAIN-206ENST00000539417 ADRB3P13945 408 aa15.94■□□□□ 0.14
RPAIN-206ENST00000539417 CCNCP24863 283 aa15.94■□□□□ 0.14
RPAIN-206ENST00000539417 MAT2AP31153 395 aaKnown RBP15.94■□□□□ 0.14
RPAIN-206ENST00000539417 SCNN1BP51168 640 aa15.94■□□□□ 0.14
RPAIN-206ENST00000539417 SEMG2Q02383 582 aa15.94■□□□□ 0.14
RPAIN-206ENST00000539417 ZBTB17Q13105 803 aa15.94■□□□□ 0.14
RPAIN-206ENST00000539417 ZNF805Q5CZA5 627 aa15.94■□□□□ 0.14
RPAIN-206ENST00000539417 MARC1Q5VT66 337 aa15.94■□□□□ 0.14
RPAIN-206ENST00000539417 TBC1D3GQ6DHY5 549 aa15.94■□□□□ 0.14
RPAIN-206ENST00000539417 TBC1D3CQ6IPX1 549 aa15.94■□□□□ 0.14
RPAIN-206ENST00000539417 ZNF662Q6ZS27 426 aa15.94■□□□□ 0.14
RPAIN-206ENST00000539417 SYT12Q8IV01 421 aa15.94■□□□□ 0.14
RPAIN-206ENST00000539417 RGL4Q8IZJ4 473 aa15.94■□□□□ 0.14
RPAIN-206ENST00000539417 TBC1D3Q8IZP1 549 aaPredicted RBP15.94■□□□□ 0.14
RPAIN-206ENST00000539417 TXLNBQ8N3L3 684 aa15.94■□□□□ 0.14
RPAIN-206ENST00000539417 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP15.94■□□□□ 0.14
RPAIN-206ENST00000539417 CCNYQ8ND76 341 aa15.94■□□□□ 0.14
RPAIN-206ENST00000539417 KLK6Q92876 244 aa15.94■□□□□ 0.14
RPAIN-206ENST00000539417 HES6Q96HZ4 224 aa15.94■□□□□ 0.14
RPAIN-206ENST00000539417 MGME1Q9BQP7 344 aa15.94■□□□□ 0.14
RPAIN-206ENST00000539417 MIR1-1HGQ9H1L0 117 aa15.94■□□□□ 0.14
RPAIN-206ENST00000539417 C10orf88Q9H8K7 445 aa15.94■□□□□ 0.14
RPAIN-206ENST00000539417 NOD2Q9HC29 1040 aa15.94■□□□□ 0.14
RPAIN-206ENST00000539417 ZFR2Q9UPR6 939 aaKnown RBP15.94■□□□□ 0.14
RPAIN-206ENST00000539417 SBDSQ9Y3A5 250 aaKnown RBP eCLIP15.94■□□□□ 0.14
RPAIN-206ENST00000539417 PIEZO1Q92508 2521 aa15.94■□□□□ 0.14
RPAIN-206ENST00000539417 SLC7A4O43246 635 aa15.93■□□□□ 0.14
RPAIN-206ENST00000539417 KRT86O43790 486 aa15.93■□□□□ 0.14
RPAIN-206ENST00000539417 HLA-DQB2P05538 268 aa15.93■□□□□ 0.14
RPAIN-206ENST00000539417 TIMP2P16035 220 aa15.93■□□□□ 0.14
RPAIN-206ENST00000539417 MMP13P45452 471 aa15.93■□□□□ 0.14
RPAIN-206ENST00000539417 CSNK1DP48730 415 aa15.93■□□□□ 0.14
RPAIN-206ENST00000539417 NEK3P51956 506 aa15.93■□□□□ 0.14
RPAIN-206ENST00000539417 RWDD2BP57060 319 aa15.93■□□□□ 0.14
RPAIN-206ENST00000539417 IRX4P78413 519 aa15.93■□□□□ 0.14
RPAIN-206ENST00000539417 PPIDQ08752 370 aaKnown RBP15.93■□□□□ 0.14
RPAIN-206ENST00000539417 NSUN2Q08J23 767 aaKnown RBP eCLIP15.93■□□□□ 0.14
RPAIN-206ENST00000539417 ZNF235Q14590 738 aa15.93■□□□□ 0.14
RPAIN-206ENST00000539417 CSRP2Q16527 193 aa15.93■□□□□ 0.14
RPAIN-206ENST00000539417 PPP2R5EQ16537 467 aa15.93■□□□□ 0.14
RPAIN-206ENST00000539417 LAYNQ6UX15 382 aa15.93■□□□□ 0.14
RPAIN-206ENST00000539417 CCDC13Q8IYE1 715 aa15.93■□□□□ 0.14
RPAIN-206ENST00000539417 ZCCHC9Q8N567 271 aaKnown RBP15.93■□□□□ 0.14
RPAIN-206ENST00000539417 CNTD1Q8N815 330 aa15.93■□□□□ 0.14
RPAIN-206ENST00000539417 FOXJ1Q92949 421 aa15.93■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 121.1 ms