RNA–Protein interactions for RNA: ENST00000538224.1

USP28-206, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-206ENST00000538224 COPAP53621 1224 aa6.7□□□□□ -1.34
USP28-206ENST00000538224 ALDH18A1P54886 795 aaKnown RBP6.7□□□□□ -1.34
USP28-206ENST00000538224 CDH4P55283 916 aa6.7□□□□□ -1.34
USP28-206ENST00000538224 DNAJB13P59910 316 aa6.7□□□□□ -1.34
USP28-206ENST00000538224 ITKQ08881 620 aa6.7□□□□□ -1.34
USP28-206ENST00000538224 TAF10Q12962 218 aa6.7□□□□□ -1.34
USP28-206ENST00000538224 OLIG2Q13516 323 aa6.7□□□□□ -1.34
USP28-206ENST00000538224 SERINC3Q13530 473 aa6.7□□□□□ -1.34
USP28-206ENST00000538224 LBRQ14739 615 aaKnown RBP6.7□□□□□ -1.34
USP28-206ENST00000538224 E2F5Q15329 346 aa6.7□□□□□ -1.34
USP28-206ENST00000538224 CCDC6Q16204 474 aa6.7□□□□□ -1.34
USP28-206ENST00000538224 PSMD5Q16401 504 aa6.7□□□□□ -1.34
USP28-206ENST00000538224 USP41Q3LFD5 358 aa6.7□□□□□ -1.34
USP28-206ENST00000538224 CMPK2Q5EBM0 449 aa6.7□□□□□ -1.34
USP28-206ENST00000538224 PPM1JQ5JR12 505 aa6.7□□□□□ -1.34
USP28-206ENST00000538224 FAM182AQ5T1J6 154 aa6.7□□□□□ -1.34
USP28-206ENST00000538224 AGAP9Q5VTM2 703 aa6.7□□□□□ -1.34
USP28-206ENST00000538224 SNX30Q5VWJ9 437 aa6.7□□□□□ -1.34
USP28-206ENST00000538224 RAP1GAP2Q684P5 730 aa6.7□□□□□ -1.34
USP28-206ENST00000538224 SEL1L3Q68CR1 1132 aa6.7□□□□□ -1.34
USP28-206ENST00000538224 ZNF470Q6ECI4 717 aa6.7□□□□□ -1.34
USP28-206ENST00000538224 ALG1LQ6GMV1 187 aa6.7□□□□□ -1.34
USP28-206ENST00000538224 SLC8B1Q6J4K2 584 aa6.7□□□□□ -1.34
USP28-206ENST00000538224 FAM45BPQ6NSW5 357 aa6.7□□□□□ -1.34
USP28-206ENST00000538224 NEPROQ6NW34 567 aa6.7□□□□□ -1.34
USP28-206ENST00000538224 FBXL22Q6P050 247 aa6.7□□□□□ -1.34
USP28-206ENST00000538224 ACAD11Q709F0 780 aa6.7□□□□□ -1.34
USP28-206ENST00000538224 CHST9Q7L1S5 443 aa6.7□□□□□ -1.34
USP28-206ENST00000538224 TFAP2DQ7Z6R9 452 aa6.7□□□□□ -1.34
USP28-206ENST00000538224 C14orf80Q86SX3 495 aa6.7□□□□□ -1.34
USP28-206ENST00000538224 EGFL6Q8IUX8 553 aa6.7□□□□□ -1.34
USP28-206ENST00000538224 FAM126BQ8IXS8 530 aa6.7□□□□□ -1.34
USP28-206ENST00000538224 FAM45AQ8TCE6 357 aa6.7□□□□□ -1.34
USP28-206ENST00000538224 JADE3Q92613 823 aa6.7□□□□□ -1.34
USP28-206ENST00000538224 TADA1Q96BN2 335 aa6.7□□□□□ -1.34
USP28-206ENST00000538224 PABPC5Q96DU9 382 aaKnown RBP6.7□□□□□ -1.34
USP28-206ENST00000538224 ATXN7L3BQ96GX2 97 aa6.7□□□□□ -1.34
USP28-206ENST00000538224 ELMO2Q96JJ3 720 aa6.7□□□□□ -1.34
USP28-206ENST00000538224 PGLYRP2Q96PD5 576 aa6.7□□□□□ -1.34
USP28-206ENST00000538224 SORT1Q99523 831 aa6.7□□□□□ -1.34
USP28-206ENST00000538224 MIPEPQ99797 713 aa6.7□□□□□ -1.34
USP28-206ENST00000538224 MRPL57Q9BQC6 102 aaKnown RBP6.7□□□□□ -1.34
USP28-206ENST00000538224 CCDC28BQ9BUN5 200 aa6.7□□□□□ -1.34
USP28-206ENST00000538224 C1QTNF1Q9BXJ1 281 aa6.7□□□□□ -1.34
USP28-206ENST00000538224 MFSD1Q9H3U5 465 aa6.7□□□□□ -1.34
USP28-206ENST00000538224 NOL6Q9H6R4 1146 aaKnown RBP6.7□□□□□ -1.34
USP28-206ENST00000538224 POPDC3Q9HBV1 291 aa6.7□□□□□ -1.34
USP28-206ENST00000538224 NDE1Q9NXR1 346 aa6.7□□□□□ -1.34
USP28-206ENST00000538224 TAS2R1Q9NYW7 299 aa6.7□□□□□ -1.34
USP28-206ENST00000538224 IL1RAPL1Q9NZN1 696 aa6.7□□□□□ -1.34
USP28-206ENST00000538224 NCKIPSDQ9NZQ3 722 aa6.7□□□□□ -1.34
USP28-206ENST00000538224 MPP6Q9NZW5 540 aa6.7□□□□□ -1.34
USP28-206ENST00000538224 MTRRQ9UBK8 725 aa6.7□□□□□ -1.34
USP28-206ENST00000538224 FBXO5Q9UKT4 447 aa6.7□□□□□ -1.34
USP28-206ENST00000538224 ANGPTL2Q9UKU9 493 aa6.7□□□□□ -1.34
USP28-206ENST00000538224 ARIH1Q9Y4X5 557 aaPredicted RBP6.7□□□□□ -1.34
USP28-206ENST00000538224 BACE2Q9Y5Z0 518 aa6.7□□□□□ -1.34
USP28-206ENST00000538224 SCN5AQ14524 2016 aa6.7□□□□□ -1.34
USP28-206ENST00000538224 OBSL1O75147 1896 aa6.7□□□□□ -1.34
USP28-206ENST00000538224 ANAPC1Q9H1A4 1944 aa6.7□□□□□ -1.34
USP28-206ENST00000538224 COL4A6Q14031 1691 aa6.69□□□□□ -1.34
USP28-206ENST00000538224 LOC285095A0A1B0GVY8 99 aa6.69□□□□□ -1.34
USP28-206ENST00000538224 CCDC189A1A4V9 331 aa6.69□□□□□ -1.34
USP28-206ENST00000538224 TRPC5OSA6NMA1 111 aa6.69□□□□□ -1.34
USP28-206ENST00000538224 TBKBP1A7MCY6 615 aa6.69□□□□□ -1.34
USP28-206ENST00000538224 A8MUI8 341 aa6.69□□□□□ -1.34
USP28-206ENST00000538224 B2RBV5 119 aa6.69□□□□□ -1.34
USP28-206ENST00000538224 PFDN6O15212 129 aa6.69□□□□□ -1.34
USP28-206ENST00000538224 ITM2AO43736 263 aa6.69□□□□□ -1.34
USP28-206ENST00000538224 ACSL4O60488 711 aa6.69□□□□□ -1.34
USP28-206ENST00000538224 NBNO60934 754 aa6.69□□□□□ -1.34
USP28-206ENST00000538224 FKTNO75072 461 aa6.69□□□□□ -1.34
USP28-206ENST00000538224 AOC2O75106 756 aa6.69□□□□□ -1.34
USP28-206ENST00000538224 CLDN11O75508 207 aa6.69□□□□□ -1.34
USP28-206ENST00000538224 LYPLA1O75608 230 aaPredicted RBP6.69□□□□□ -1.34
USP28-206ENST00000538224 TM7SF2O76062 418 aa6.69□□□□□ -1.34
USP28-206ENST00000538224 ANP32DO95626 131 aa6.69□□□□□ -1.34
USP28-206ENST00000538224 TOP3BO95985 862 aaKnown RBP6.69□□□□□ -1.34
USP28-206ENST00000538224 PENKP01210 267 aaPredicted RBP6.69□□□□□ -1.34
USP28-206ENST00000538224 AHSGP02765 367 aa6.69□□□□□ -1.34
USP28-206ENST00000538224 PRKCGP05129 697 aa6.69□□□□□ -1.34
USP28-206ENST00000538224 GALTP07902 379 aa6.69□□□□□ -1.34
USP28-206ENST00000538224 SERPINF2P08697 491 aa6.69□□□□□ -1.34
USP28-206ENST00000538224 TPBGLP0DKB5 382 aa6.69□□□□□ -1.34
USP28-206ENST00000538224 OGNP20774 298 aaKnown RBP6.69□□□□□ -1.34
USP28-206ENST00000538224 ATP5F1P24539 256 aaPredicted RBP6.69□□□□□ -1.34
USP28-206ENST00000538224 OR1E1P30953 314 aa6.69□□□□□ -1.34
USP28-206ENST00000538224 MAP2K2P36507 400 aa6.69□□□□□ -1.34
USP28-206ENST00000538224 ATP5C1P36542 298 aaKnown RBP6.69□□□□□ -1.34
USP28-206ENST00000538224 CD86P42081 329 aa6.69□□□□□ -1.34
USP28-206ENST00000538224 SLC1A2P43004 574 aa6.69□□□□□ -1.34
USP28-206ENST00000538224 LEPRP48357 1165 aaKnown RBP6.69□□□□□ -1.34
USP28-206ENST00000538224 GPR15P49685 360 aa6.69□□□□□ -1.34
USP28-206ENST00000538224 IDH3AP50213 366 aa6.69□□□□□ -1.34
USP28-206ENST00000538224 RPL14P50914 215 aaKnown RBP6.69□□□□□ -1.34
USP28-206ENST00000538224 ARPP19P56211 112 aa6.69□□□□□ -1.34
USP28-206ENST00000538224 NAA20P61599 178 aa6.69□□□□□ -1.34
USP28-206ENST00000538224 USP46P62068 366 aa6.69□□□□□ -1.34
USP28-206ENST00000538224 PRAMEP78395 509 aa6.69□□□□□ -1.34
USP28-206ENST00000538224 IRX1P78414 480 aaPredicted RBP6.69□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms