RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-238	ENST00000534296	TYW5	A2RUC4	315 aa	Known RBP	2.94	□□□□□ -1.94
CD44-238	ENST00000534296	FAM157A	C9JC47	383 aa		2.94	□□□□□ -1.94
CD44-238	ENST00000534296		I6L893	689 aa	Predicted RBP	2.94	□□□□□ -1.94
CD44-238	ENST00000534296	CHL1	O00533	1208 aa		2.94	□□□□□ -1.94
CD44-238	ENST00000534296	PEX12	O00623	359 aa		2.94	□□□□□ -1.94
CD44-238	ENST00000534296	LDB2	O43679	373 aa		2.94	□□□□□ -1.94
CD44-238	ENST00000534296	CHRM4	P08173	479 aa		2.94	□□□□□ -1.94
CD44-238	ENST00000534296	TFPI	P10646	304 aa		2.94	□□□□□ -1.94
CD44-238	ENST00000534296	PCNA	P12004	261 aa		2.94	□□□□□ -1.94
CD44-238	ENST00000534296	DAO	P14920	347 aa		2.94	□□□□□ -1.94
CD44-238	ENST00000534296	PAX3	P23760	479 aa		2.94	□□□□□ -1.94
CD44-238	ENST00000534296	CNTF	P26441	200 aa		2.94	□□□□□ -1.94
CD44-238	ENST00000534296	TNFRSF8	P28908	595 aa		2.94	□□□□□ -1.94
CD44-238	ENST00000534296	HDAC4	P56524	1084 aa		2.94	□□□□□ -1.94
CD44-238	ENST00000534296	ABAT	P80404	500 aa		2.94	□□□□□ -1.94
CD44-238	ENST00000534296	FOXD4	Q12950	439 aa	Predicted RBP	2.94	□□□□□ -1.94
CD44-238	ENST00000534296	TRAF1	Q13077	416 aa		2.94	□□□□□ -1.94
CD44-238	ENST00000534296	EFR3A	Q14156	821 aa		2.94	□□□□□ -1.94
CD44-238	ENST00000534296	TBC1D9B	Q66K14	1250 aa		2.94	□□□□□ -1.94
CD44-238	ENST00000534296	TYW3	Q6IPR3	259 aa	Known RBP	2.94	□□□□□ -1.94
CD44-238	ENST00000534296	IL20RB	Q6UXL0	311 aa		2.94	□□□□□ -1.94
CD44-238	ENST00000534296	FAM83H	Q6ZRV2	1179 aa	Predicted RBP	2.94	□□□□□ -1.94
CD44-238	ENST00000534296	DENND6A	Q8IWF6	608 aa		2.94	□□□□□ -1.94
CD44-238	ENST00000534296	RBFA	Q8N0V3	343 aa		2.94	□□□□□ -1.94
CD44-238	ENST00000534296	TEX45	Q8NA69	505 aa		2.94	□□□□□ -1.94
CD44-238	ENST00000534296	TEX19	Q8NA77	164 aa		2.94	□□□□□ -1.94
CD44-238	ENST00000534296	RASSF8	Q8NHQ8	419 aa		2.94	□□□□□ -1.94
CD44-238	ENST00000534296	CNOT9	Q92600	299 aa	Known RBP	2.94	□□□□□ -1.94
CD44-238	ENST00000534296	STAM	Q92783	540 aa		2.94	□□□□□ -1.94
CD44-238	ENST00000534296	ATP8A2	Q9NTI2	1148 aa		2.94	□□□□□ -1.94
CD44-238	ENST00000534296	SPATS2L	Q9NUQ6	558 aa	Known RBP	2.94	□□□□□ -1.94
CD44-238	ENST00000534296	FEM1B	Q9UK73	627 aa		2.94	□□□□□ -1.94
CD44-238	ENST00000534296	DNAJC16	Q9Y2G8	782 aa		2.94	□□□□□ -1.94
CD44-238	ENST00000534296	MBD3L2B	A0A1B0GVZ6	204 aa	Predicted RBP	2.93	□□□□□ -1.94
CD44-238	ENST00000534296	ARHGAP10	A1A4S6	786 aa		2.93	□□□□□ -1.94
CD44-238	ENST00000534296	BTBD18	B2RXH4	712 aa		2.93	□□□□□ -1.94
CD44-238	ENST00000534296	GTPBP1	O00178	669 aa	Known RBP	2.93	□□□□□ -1.94
CD44-238	ENST00000534296	TSPAN4	O14817	238 aa		2.93	□□□□□ -1.94
CD44-238	ENST00000534296	NCAM2	O15394	837 aa		2.93	□□□□□ -1.94
CD44-238	ENST00000534296	SOX30	O94993	753 aa		2.93	□□□□□ -1.94
CD44-238	ENST00000534296	ZNF8	P17098	575 aa	Predicted RBP	2.93	□□□□□ -1.94
CD44-238	ENST00000534296	DDIT3	P35638	169 aa		2.93	□□□□□ -1.94
CD44-238	ENST00000534296	HNF1B	P35680	557 aa		2.93	□□□□□ -1.94
CD44-238	ENST00000534296	PGM1	P36871	562 aa		2.93	□□□□□ -1.94
CD44-238	ENST00000534296	RPL3	P39023	403 aa	Known RBP	2.93	□□□□□ -1.94
CD44-238	ENST00000534296	LIFR	P42702	1097 aa		2.93	□□□□□ -1.94
CD44-238	ENST00000534296	PAFAH1B1	P43034	410 aa		2.93	□□□□□ -1.94
CD44-238	ENST00000534296	GPD2	P43304	727 aa		2.93	□□□□□ -1.94
CD44-238	ENST00000534296	BLK	P51451	505 aa		2.93	□□□□□ -1.94
CD44-238	ENST00000534296	PMS2	P54278	862 aa		2.93	□□□□□ -1.94
CD44-238	ENST00000534296	ARSF	P54793	590 aa		2.93	□□□□□ -1.94
CD44-238	ENST00000534296	RPL36A	P83881	106 aa	Known RBP	2.93	□□□□□ -1.94
CD44-238	ENST00000534296	POU3F1	Q03052	451 aa	Predicted RBP	2.93	□□□□□ -1.94
CD44-238	ENST00000534296	TBX2	Q13207	712 aa	Predicted RBP	2.93	□□□□□ -1.94
CD44-238	ENST00000534296	RUNX2	Q13950	521 aa		2.93	□□□□□ -1.94
CD44-238	ENST00000534296	SLC39A14	Q15043	492 aa		2.93	□□□□□ -1.94
CD44-238	ENST00000534296	RPE65	Q16518	533 aa		2.93	□□□□□ -1.94
CD44-238	ENST00000534296	ME3	Q16798	604 aa		2.93	□□□□□ -1.94
CD44-238	ENST00000534296	ZNF284	Q2VY69	593 aa		2.93	□□□□□ -1.94
CD44-238	ENST00000534296	PLEKHO1	Q53GL0	409 aa	Predicted RBP	2.93	□□□□□ -1.94
CD44-238	ENST00000534296	JAKMIP3	Q5VZ66	844 aa		2.93	□□□□□ -1.94
CD44-238	ENST00000534296	NAA35	Q5VZE5	725 aa		2.93	□□□□□ -1.94
CD44-238	ENST00000534296	CYP26C1	Q6V0L0	522 aa		2.93	□□□□□ -1.94
CD44-238	ENST00000534296	H1FNT	Q75WM6	255 aa	Predicted RBP	2.93	□□□□□ -1.94
CD44-238	ENST00000534296	LRRTM4	Q86VH4	590 aa		2.93	□□□□□ -1.94
CD44-238	ENST00000534296	CHD1L	Q86WJ1	897 aa		2.93	□□□□□ -1.94
CD44-238	ENST00000534296	DCP1B	Q8IZD4	617 aa	Known RBP	2.93	□□□□□ -1.94
CD44-238	ENST00000534296	TCP11L2	Q8N4U5	519 aa		2.93	□□□□□ -1.94
CD44-238	ENST00000534296	NAXE	Q8NCW5	288 aa		2.93	□□□□□ -1.94
CD44-238	ENST00000534296	ADAMTS14	Q8WXS8	1223 aa		2.93	□□□□□ -1.94
CD44-238	ENST00000534296	MTBP	Q96DY7	904 aa		2.93	□□□□□ -1.94
CD44-238	ENST00000534296	RNFT2	Q96EX2	444 aa		2.93	□□□□□ -1.94
CD44-238	ENST00000534296	DUX5	Q96PT3	197 aa		2.93	□□□□□ -1.94
CD44-238	ENST00000534296	SEC62	Q99442	399 aa	Known RBP	2.93	□□□□□ -1.94
CD44-238	ENST00000534296	HERC2P3	Q9BVR0	1158 aa		2.93	□□□□□ -1.94
CD44-238	ENST00000534296	PDCL3	Q9H2J4	239 aa		2.93	□□□□□ -1.94
CD44-238	ENST00000534296	CXorf56	Q9H5V9	222 aa		2.93	□□□□□ -1.94
CD44-238	ENST00000534296	STN1	Q9H668	368 aa	Known RBP	2.93	□□□□□ -1.94
CD44-238	ENST00000534296	WDR6	Q9NNW5	1121 aa	Known RBP	2.93	□□□□□ -1.94
CD44-238	ENST00000534296	TMEM51	Q9NW97	253 aa		2.93	□□□□□ -1.94
CD44-238	ENST00000534296	ARHGAP26	Q9UNA1	814 aa		2.93	□□□□□ -1.94
CD44-238	ENST00000534296	GPR52	Q9Y2T5	361 aa		2.93	□□□□□ -1.94
CD44-238	ENST00000534296	LRP12	Q9Y561	859 aa		2.93	□□□□□ -1.94
CD44-238	ENST00000534296	RAI2	Q9Y5P3	530 aa		2.93	□□□□□ -1.94
CD44-238	ENST00000534296		A0A1B0GVM2	712 aa		2.92	□□□□□ -1.94
CD44-238	ENST00000534296	PLSCR5	A0PG75	271 aa		2.92	□□□□□ -1.94
CD44-238	ENST00000534296	TARSL2	A2RTX5	802 aa	Known RBP	2.92	□□□□□ -1.94
CD44-238	ENST00000534296	LINC01553	A4QN01	128 aa		2.92	□□□□□ -1.94
CD44-238	ENST00000534296	EPB41L2	O43491	1005 aa	Known RBP	2.92	□□□□□ -1.94
CD44-238	ENST00000534296	SLC25A17	O43808	307 aa		2.92	□□□□□ -1.94
CD44-238	ENST00000534296	ADA	P00813	363 aa		2.92	□□□□□ -1.94
CD44-238	ENST00000534296	PYGL	P06737	847 aa		2.92	□□□□□ -1.94
CD44-238	ENST00000534296	CNP	P09543	421 aa	Known RBP	2.92	□□□□□ -1.94
CD44-238	ENST00000534296	CTPS1	P17812	591 aa		2.92	□□□□□ -1.94
CD44-238	ENST00000534296	CD58	P19256	250 aa		2.92	□□□□□ -1.94
CD44-238	ENST00000534296	CD53	P19397	219 aa		2.92	□□□□□ -1.94
CD44-238	ENST00000534296	DCTD	P32321	178 aa		2.92	□□□□□ -1.94
CD44-238	ENST00000534296	THPO	P40225	353 aa		2.92	□□□□□ -1.94
CD44-238	ENST00000534296	RFX5	P48382	616 aa	Predicted RBP	2.92	□□□□□ -1.94
CD44-238	ENST00000534296	CENPA	P49450	140 aa		2.92	□□□□□ -1.94

Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms