RNA–Protein interactions for RNA: ENST00000533242.1

NEDD8-207, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 1 (best)

Gene NEDD8, Length 2,300 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-207ENST00000533242 FASTKD3Q14CZ7 662 aaKnown RBP8.42□□□□□ -1.06
NEDD8-207ENST00000533242 CNGA2Q16280 664 aa8.42□□□□□ -1.06
NEDD8-207ENST00000533242 HP1BP3Q5SSJ5 553 aaPredicted RBP8.42□□□□□ -1.06
NEDD8-207ENST00000533242 LRRC69Q6ZNQ3 347 aa8.42□□□□□ -1.06
NEDD8-207ENST00000533242 CLEC20AQ6ZU45 233 aa8.42□□□□□ -1.06
NEDD8-207ENST00000533242 SCD5Q86SK9 330 aa8.42□□□□□ -1.06
NEDD8-207ENST00000533242 FAM124AQ86V42 546 aa8.42□□□□□ -1.06
NEDD8-207ENST00000533242 CPXM2Q8N436 756 aa8.42□□□□□ -1.06
NEDD8-207ENST00000533242 ARFGAP1Q8N6T3 406 aa8.42□□□□□ -1.06
NEDD8-207ENST00000533242 ATL2Q8NHH9 583 aa8.42□□□□□ -1.06
NEDD8-207ENST00000533242 PIP4K2CQ8TBX8 421 aa8.42□□□□□ -1.06
NEDD8-207ENST00000533242 CHMP6Q96FZ7 201 aa8.42□□□□□ -1.06
NEDD8-207ENST00000533242 FAM81BQ96LP2 452 aa8.42□□□□□ -1.06
NEDD8-207ENST00000533242 FBRSQ9HAH7 460 aa8.42□□□□□ -1.06
NEDD8-207ENST00000533242 SAE1Q9UBE0 346 aaPredicted RBP8.42□□□□□ -1.06
NEDD8-207ENST00000533242 HMGXB4Q9UGU5 601 aa8.42□□□□□ -1.06
NEDD8-207ENST00000533242 ZBTB32Q9Y2Y4 487 aaPredicted RBP8.42□□□□□ -1.06
NEDD8-207ENST00000533242 PCDHGA1Q9Y5H4 931 aa8.42□□□□□ -1.06
NEDD8-207ENST00000533242 GCN1Q92616 2671 aaKnown RBP8.42□□□□□ -1.06
NEDD8-207ENST00000533242 NYNRINQ9P2P1 1898 aaKnown RBP8.42□□□□□ -1.06
NEDD8-207ENST00000533242 DMXL2Q8TDJ6 3036 aa8.42□□□□□ -1.06
NEDD8-207ENST00000533242 NBEAQ8NFP9 2946 aa8.41□□□□□ -1.06
NEDD8-207ENST00000533242 H0Y8X5 98 aa8.41□□□□□ -1.06
NEDD8-207ENST00000533242 FSBPO95073 299 aa8.41□□□□□ -1.06
NEDD8-207ENST00000533242 PRB1P04280 392 aa8.41□□□□□ -1.06
NEDD8-207ENST00000533242 EPHX1P07099 455 aa8.41□□□□□ -1.06
NEDD8-207ENST00000533242 ITIH2P19823 946 aa8.41□□□□□ -1.06
NEDD8-207ENST00000533242 TBXAS1P24557 533 aaPredicted RBP8.41□□□□□ -1.06
NEDD8-207ENST00000533242 CD27P26842 260 aa8.41□□□□□ -1.06
NEDD8-207ENST00000533242 CTSKP43235 329 aa8.41□□□□□ -1.06
NEDD8-207ENST00000533242 PDE4CQ08493 712 aa8.41□□□□□ -1.06
NEDD8-207ENST00000533242 CCNG2Q16589 344 aa8.41□□□□□ -1.06
NEDD8-207ENST00000533242 SGSM1Q2NKQ1 1148 aa8.41□□□□□ -1.06
NEDD8-207ENST00000533242 PPP1R15BQ5SWA1 713 aa8.41□□□□□ -1.06
NEDD8-207ENST00000533242 C6orf118Q5T5N4 469 aa8.41□□□□□ -1.06
NEDD8-207ENST00000533242 DENND1BQ6P3S1 775 aa8.41□□□□□ -1.06
NEDD8-207ENST00000533242 DHRS13Q6UX07 377 aa8.41□□□□□ -1.06
NEDD8-207ENST00000533242 SERPINA13PQ6UXR4 307 aa8.41□□□□□ -1.06
NEDD8-207ENST00000533242 YTHDF3Q7Z739 585 aaKnown RBP8.41□□□□□ -1.06
NEDD8-207ENST00000533242 CCDC13Q8IYE1 715 aa8.41□□□□□ -1.06
NEDD8-207ENST00000533242 MGARPQ8TDB4 240 aa8.41□□□□□ -1.06
NEDD8-207ENST00000533242 CENPTQ96BT3 561 aa8.41□□□□□ -1.06
NEDD8-207ENST00000533242 TRIM11Q96F44 468 aa8.41□□□□□ -1.06
NEDD8-207ENST00000533242 CNOT10Q9H9A5 744 aaKnown RBP8.41□□□□□ -1.06
NEDD8-207ENST00000533242 FAM49BQ9NUQ9 324 aa8.41□□□□□ -1.06
NEDD8-207ENST00000533242 CLIC5Q9NZA1 410 aa8.41□□□□□ -1.06
NEDD8-207ENST00000533242 TBK1Q9UHD2 729 aa8.41□□□□□ -1.06
NEDD8-207ENST00000533242 ANAPC5Q9UJX4 755 aa8.41□□□□□ -1.06
NEDD8-207ENST00000533242 NUDT5Q9UKK9 219 aa8.41□□□□□ -1.06
NEDD8-207ENST00000533242 SLCO1B1Q9Y6L6 691 aa8.41□□□□□ -1.06
NEDD8-207ENST00000533242 LIASO43766 372 aa8.41□□□□□ -1.06
NEDD8-207ENST00000533242 TSPAN3O60637 253 aa8.41□□□□□ -1.06
NEDD8-207ENST00000533242 SEMA4FO95754 770 aa8.41□□□□□ -1.06
NEDD8-207ENST00000533242 C1SP09871 688 aa8.41□□□□□ -1.06
NEDD8-207ENST00000533242 PLA2G2AP14555 144 aa8.41□□□□□ -1.06
NEDD8-207ENST00000533242 IL1R2P27930 398 aa8.41□□□□□ -1.06
NEDD8-207ENST00000533242 CORO1AP31146 461 aaKnown RBP8.41□□□□□ -1.06
NEDD8-207ENST00000533242 HNF1BP35680 557 aa8.41□□□□□ -1.06
NEDD8-207ENST00000533242 EIF2S3P41091 472 aaKnown RBP8.41□□□□□ -1.06
NEDD8-207ENST00000533242 SMTNL2Q2TAL5 461 aa8.41□□□□□ -1.06
NEDD8-207ENST00000533242 P3H1Q32P28 736 aa8.41□□□□□ -1.06
NEDD8-207ENST00000533242 PTPN20Q4JDL3 420 aa8.41□□□□□ -1.06
NEDD8-207ENST00000533242 IZUMO3Q5VZ72 239 aa8.41□□□□□ -1.06
NEDD8-207ENST00000533242 TRIM72Q6ZMU5 477 aa8.41□□□□□ -1.06
NEDD8-207ENST00000533242 TRMT10CQ7L0Y3 403 aaKnown RBP8.41□□□□□ -1.06
NEDD8-207ENST00000533242 CPLX4Q7Z7G2 160 aa8.41□□□□□ -1.06
NEDD8-207ENST00000533242 FAM217AQ8IXS0 508 aa8.41□□□□□ -1.06
NEDD8-207ENST00000533242 EXD1Q8NHP7 514 aa8.41□□□□□ -1.06
NEDD8-207ENST00000533242 JOSD2Q8TAC2 188 aa8.41□□□□□ -1.06
NEDD8-207ENST00000533242 WFIKKN2Q8TEU8 576 aa8.41□□□□□ -1.06
NEDD8-207ENST00000533242 ARHGEF2Q92974 986 aaKnown RBP8.41□□□□□ -1.06
NEDD8-207ENST00000533242 VCPIP1Q96JH7 1222 aa8.41□□□□□ -1.06
NEDD8-207ENST00000533242 RUNDC3BQ96NL0 473 aa8.41□□□□□ -1.06
NEDD8-207ENST00000533242 TWNKQ96RR1 684 aa8.41□□□□□ -1.06
NEDD8-207ENST00000533242 CIPCQ9C0C6 399 aa8.41□□□□□ -1.06
NEDD8-207ENST00000533242 NIF3L1Q9GZT8 377 aa8.41□□□□□ -1.06
NEDD8-207ENST00000533242 MRPL47Q9HD33 250 aaKnown RBP8.41□□□□□ -1.06
NEDD8-207ENST00000533242 INTS9Q9NV88 658 aaKnown RBP8.41□□□□□ -1.06
NEDD8-207ENST00000533242 PARVAQ9NVD7 372 aa8.41□□□□□ -1.06
NEDD8-207ENST00000533242 AGO1Q9UL18 857 aaKnown RBP8.41□□□□□ -1.06
NEDD8-207ENST00000533242 SBDSQ9Y3A5 250 aaKnown RBP eCLIP8.41□□□□□ -1.06
NEDD8-207ENST00000533242 A0A1B0GTQ1 180 aa8.4□□□□□ -1.06
NEDD8-207ENST00000533242 TMEM120BA0PK00 339 aa8.4□□□□□ -1.06
NEDD8-207ENST00000533242 PLK4O00444 970 aa8.4□□□□□ -1.06
NEDD8-207ENST00000533242 BANF1O75531 89 aa8.4□□□□□ -1.06
NEDD8-207ENST00000533242 PIAS1O75925 651 aa8.4□□□□□ -1.06
NEDD8-207ENST00000533242 KIAA0754O94854 1291 aa8.4□□□□□ -1.06
NEDD8-207ENST00000533242 GAS8O95995 478 aa8.4□□□□□ -1.06
NEDD8-207ENST00000533242 KRT1P04264 644 aa8.4□□□□□ -1.06
NEDD8-207ENST00000533242 ITPKBP27987 946 aa8.4□□□□□ -1.06
NEDD8-207ENST00000533242 GCAP28676 217 aa8.4□□□□□ -1.06
NEDD8-207ENST00000533242 ACSL1P33121 698 aa8.4□□□□□ -1.06
NEDD8-207ENST00000533242 RFC1P35251 1148 aaPredicted RBP8.4□□□□□ -1.06
NEDD8-207ENST00000533242 ZBTB16Q05516 673 aa8.4□□□□□ -1.06
NEDD8-207ENST00000533242 RAB6CQ53S08 254 aa8.4□□□□□ -1.06
NEDD8-207ENST00000533242 CCDC157Q569K6 752 aa8.4□□□□□ -1.06
NEDD8-207ENST00000533242 KCNT1Q5JUK3 1230 aa8.4□□□□□ -1.06
NEDD8-207ENST00000533242 TMEM215Q68D42 235 aa8.4□□□□□ -1.06
NEDD8-207ENST00000533242 HIBCHQ6NVY1 386 aaPredicted RBP8.4□□□□□ -1.06
NEDD8-207ENST00000533242 CACUL1Q86Y37 369 aa8.4□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms