RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 SMARCD1Q96GM5 515 aa19.48■□□□□ 0.71
VPS28-213ENST00000530983 FCRL5Q96RD9 977 aa19.48■□□□□ 0.71
VPS28-213ENST00000530983 COPS7BQ9H9Q2 264 aaPredicted RBP19.48■□□□□ 0.71
VPS28-213ENST00000530983 EFCAB1Q9HAE3 211 aa19.48■□□□□ 0.71
VPS28-213ENST00000530983 LMCD1Q9NZU5 365 aa19.48■□□□□ 0.71
VPS28-213ENST00000530983 HAS3O00219 553 aa19.47■□□□□ 0.71
VPS28-213ENST00000530983 ME2P23368 584 aa19.47■□□□□ 0.71
VPS28-213ENST00000530983 EPHX2P34913 555 aa19.47■□□□□ 0.71
VPS28-213ENST00000530983 ART3Q13508 389 aa19.47■□□□□ 0.71
VPS28-213ENST00000530983 RFTN1Q14699 578 aaPredicted RBP19.47■□□□□ 0.71
VPS28-213ENST00000530983 TLK2Q86UE8 772 aa19.47■□□□□ 0.71
VPS28-213ENST00000530983 NAT14Q8WUY8 206 aa19.47■□□□□ 0.71
VPS28-213ENST00000530983 RNF34Q969K3 372 aa19.47■□□□□ 0.71
VPS28-213ENST00000530983 NPAS2Q99743 824 aa19.47■□□□□ 0.71
VPS28-213ENST00000530983 FICDQ9BVA6 458 aa19.47■□□□□ 0.71
VPS28-213ENST00000530983 MRPL46Q9H2W6 279 aaKnown RBP19.47■□□□□ 0.71
VPS28-213ENST00000530983 SUDS3Q9H7L9 328 aaPredicted RBP19.47■□□□□ 0.71
VPS28-213ENST00000530983 CSNK1G1Q9HCP0 422 aa19.47■□□□□ 0.71
VPS28-213ENST00000530983 ATXN10Q9UBB4 475 aa19.47■□□□□ 0.71
VPS28-213ENST00000530983 CDH9Q9ULB4 789 aa19.47■□□□□ 0.71
VPS28-213ENST00000530983 PCDHGB4Q9UN71 923 aa19.47■□□□□ 0.71
VPS28-213ENST00000530983 PHF24Q9UPV7 400 aa19.47■□□□□ 0.71
VPS28-213ENST00000530983 PCDHGB5Q9Y5G0 923 aa19.47■□□□□ 0.71
VPS28-213ENST00000530983 SDHDO14521 159 aa19.47■□□□□ 0.71
VPS28-213ENST00000530983 ACOT8O14734 319 aa19.47■□□□□ 0.71
VPS28-213ENST00000530983 NPHS1O60500 1241 aa19.47■□□□□ 0.71
VPS28-213ENST00000530983 BCAS2O75934 225 aaPredicted RBP19.47■□□□□ 0.71
VPS28-213ENST00000530983 PMLP29590 882 aa19.47■□□□□ 0.71
VPS28-213ENST00000530983 POLD2P49005 469 aa19.47■□□□□ 0.71
VPS28-213ENST00000530983 ATXN3P54252 364 aaPredicted RBP19.47■□□□□ 0.71
VPS28-213ENST00000530983 TAS2R39P59534 338 aa19.47■□□□□ 0.71
VPS28-213ENST00000530983 SH2D4BQ5SQS7 431 aa19.47■□□□□ 0.71
VPS28-213ENST00000530983 ATPAF2Q8N5M1 289 aa19.47■□□□□ 0.71
VPS28-213ENST00000530983 DQX1Q8TE96 717 aaKnown RBP19.47■□□□□ 0.71
VPS28-213ENST00000530983 KLHL32Q96NJ5 620 aa19.47■□□□□ 0.71
VPS28-213ENST00000530983 GLOD4Q9HC38 313 aa19.47■□□□□ 0.71
VPS28-213ENST00000530983 TCAF1Q9Y4C2 921 aa19.47■□□□□ 0.71
VPS28-213ENST00000530983 CENPFP49454 3210 aa19.47■□□□□ 0.71
VPS28-213ENST00000530983 NYNRINQ9P2P1 1898 aaKnown RBP19.47■□□□□ 0.71
VPS28-213ENST00000530983 CCL15-CCL14A0A0B4J2E2 113 aa19.46■□□□□ 0.71
VPS28-213ENST00000530983 ANXA9O76027 345 aa19.46■□□□□ 0.71
VPS28-213ENST00000530983 PGM3O95394 542 aa19.46■□□□□ 0.71
VPS28-213ENST00000530983 CRTAMO95727 393 aa19.46■□□□□ 0.71
VPS28-213ENST00000530983 SH3BGRP55822 239 aaPredicted RBP19.46■□□□□ 0.71
VPS28-213ENST00000530983 CCL15Q16663 113 aa19.46■□□□□ 0.71
VPS28-213ENST00000530983 OLFML2BQ68BL8 750 aa19.46■□□□□ 0.71
VPS28-213ENST00000530983 PLEKHH3Q7Z736 793 aa19.46■□□□□ 0.71
VPS28-213ENST00000530983 PPHLN1Q8NEY8 458 aaKnown RBP19.46■□□□□ 0.71
VPS28-213ENST00000530983 BRI3BPQ8WY22 251 aa19.46■□□□□ 0.71
VPS28-213ENST00000530983 SGF29Q96ES7 293 aa19.46■□□□□ 0.71
VPS28-213ENST00000530983 ELMO2Q96JJ3 720 aa19.46■□□□□ 0.71
VPS28-213ENST00000530983 FAM210AQ96ND0 272 aa19.46■□□□□ 0.71
VPS28-213ENST00000530983 IL12RB2Q99665 862 aa19.46■□□□□ 0.71
VPS28-213ENST00000530983 SIK2Q9H0K1 926 aa19.46■□□□□ 0.71
VPS28-213ENST00000530983 OSBPL2Q9H1P3 480 aa19.46■□□□□ 0.71
VPS28-213ENST00000530983 NCKIPSDQ9NZQ3 722 aa19.46■□□□□ 0.71
VPS28-213ENST00000530983 BCAP29Q9UHQ4 241 aa19.46■□□□□ 0.71
VPS28-213ENST00000530983 PRSS51A0A1B0GVH4 220 aa19.46■□□□□ 0.71
VPS28-213ENST00000530983 MAFKO60675 156 aa19.46■□□□□ 0.71
VPS28-213ENST00000530983 ADRA1AP35348 466 aa19.46■□□□□ 0.71
VPS28-213ENST00000530983 PIWIL4Q7Z3Z4 852 aaKnown RBP19.46■□□□□ 0.71
VPS28-213ENST00000530983 PELI3Q8N2H9 469 aa19.46■□□□□ 0.71
VPS28-213ENST00000530983 HEXDCQ8WVB3 486 aa19.46■□□□□ 0.71
VPS28-213ENST00000530983 MYLPFQ96A32 169 aa19.46■□□□□ 0.71
VPS28-213ENST00000530983 TMA16Q96EY4 203 aaKnown RBP19.46■□□□□ 0.71
VPS28-213ENST00000530983 GAD1Q99259 594 aa19.46■□□□□ 0.71
VPS28-213ENST00000530983 POMKQ9H5K3 350 aa19.46■□□□□ 0.71
VPS28-213ENST00000530983 SLC38A7Q9NVC3 462 aa19.46■□□□□ 0.71
VPS28-213ENST00000530983 MIOSQ9NXC5 875 aa19.46■□□□□ 0.71
VPS28-213ENST00000530983 RAB26Q9ULW5 256 aa19.46■□□□□ 0.71
VPS28-213ENST00000530983 NEMP2A6NFY4 417 aa19.45■□□□□ 0.7
VPS28-213ENST00000530983 OR6B1O95007 311 aa19.45■□□□□ 0.7
VPS28-213ENST00000530983 HSPA1AP0DMV8 641 aaKnown RBP19.45■□□□□ 0.7
VPS28-213ENST00000530983 HSPA1BP0DMV9 641 aaKnown RBP19.45■□□□□ 0.7
VPS28-213ENST00000530983 ZNF470Q6ECI4 717 aa19.45■□□□□ 0.7
VPS28-213ENST00000530983 ZNF280DQ6N043 979 aa19.45■□□□□ 0.7
VPS28-213ENST00000530983 CNSTQ6PJW8 725 aa19.45■□□□□ 0.7
VPS28-213ENST00000530983 POTEHQ6S545 545 aa19.45■□□□□ 0.7
VPS28-213ENST00000530983 TRIM67Q6ZTA4 783 aa19.45■□□□□ 0.7
VPS28-213ENST00000530983 SPNS2Q8IVW8 549 aa19.45■□□□□ 0.7
VPS28-213ENST00000530983 CCDC117Q8IWD4 279 aaPredicted RBP19.45■□□□□ 0.7
VPS28-213ENST00000530983 C2CD4AQ8NCU7 369 aaPredicted RBP19.45■□□□□ 0.7
VPS28-213ENST00000530983 ADCY4Q8NFM4 1077 aa19.45■□□□□ 0.7
VPS28-213ENST00000530983 IRGQQ8WZA9 623 aa19.45■□□□□ 0.7
VPS28-213ENST00000530983 DLG3Q92796 817 aa19.45■□□□□ 0.7
VPS28-213ENST00000530983 PKP2Q99959 881 aa19.45■□□□□ 0.7
VPS28-213ENST00000530983 MRPL57Q9BQC6 102 aaKnown RBP19.45■□□□□ 0.7
VPS28-213ENST00000530983 RTP3Q9BQQ7 232 aa19.45■□□□□ 0.7
VPS28-213ENST00000530983 EPB41L1Q9H4G0 881 aa19.45■□□□□ 0.7
VPS28-213ENST00000530983 TREX1Q9NSU2 369 aa19.45■□□□□ 0.7
VPS28-213ENST00000530983 AP4B1Q9Y6B7 739 aa19.45■□□□□ 0.7
VPS28-213ENST00000530983 DOCK3Q8IZD9 2030 aa19.45■□□□□ 0.7
VPS28-213ENST00000530983 SMIM31A0A1B0GVY4 71 aa19.45■□□□□ 0.7
VPS28-213ENST00000530983 TRPC5OSA6NMA1 111 aa19.45■□□□□ 0.7
VPS28-213ENST00000530983 AURKAO14965 403 aa19.45■□□□□ 0.7
VPS28-213ENST00000530983 IGLV3-25P01717 112 aa19.45■□□□□ 0.7
VPS28-213ENST00000530983 HNRNPLP14866 589 aaKnown RBP eCLIP19.45■□□□□ 0.7
VPS28-213ENST00000530983 C9orf131Q5VYM1 1079 aa19.45■□□□□ 0.7
VPS28-213ENST00000530983 FAM156AQ8NDB6 213 aa19.45■□□□□ 0.7
VPS28-213ENST00000530983 PAAF1Q9BRP4 392 aa19.45■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms