RNA–Protein interactions for RNA: ENST00000529661.1

C11orf88-204, Transcript of chromosome 11 open reading frame 88, humanhuman

TSL 3

Gene C11orf88, Length 624 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C11orf88-204ENST00000529661 NLKQ9UBE8 527 aa4.88□□□□□ -1.63
C11orf88-204ENST00000529661 TNFSF13BQ9Y275 285 aa4.88□□□□□ -1.63
C11orf88-204ENST00000529661 OR6C68A6NDL8 312 aa4.87□□□□□ -1.63
C11orf88-204ENST00000529661 PROB1E7EW31 1015 aa4.87□□□□□ -1.63
C11orf88-204ENST00000529661 KCNAB3O43448 404 aa4.87□□□□□ -1.63
C11orf88-204ENST00000529661 HBP1O60381 514 aa4.87□□□□□ -1.63
C11orf88-204ENST00000529661 ATG13O75143 517 aa4.87□□□□□ -1.63
C11orf88-204ENST00000529661 TIPRLO75663 272 aa4.87□□□□□ -1.63
C11orf88-204ENST00000529661 SCGB1D1O95968 90 aa4.87□□□□□ -1.63
C11orf88-204ENST00000529661 SERPINC1P01008 464 aa4.87□□□□□ -1.63
C11orf88-204ENST00000529661 FGF2P09038 288 aa4.87□□□□□ -1.63
C11orf88-204ENST00000529661 ABCD1P33897 745 aa4.87□□□□□ -1.63
C11orf88-204ENST00000529661 HOXD13P35453 343 aa4.87□□□□□ -1.63
C11orf88-204ENST00000529661 HARS2P49590 506 aaKnown RBP4.87□□□□□ -1.63
C11orf88-204ENST00000529661 ARF3P61204 181 aaPredicted RBP4.87□□□□□ -1.63
C11orf88-204ENST00000529661 RPS3AP61247 264 aaKnown RBP4.87□□□□□ -1.63
C11orf88-204ENST00000529661 ARF1P84077 181 aaKnown RBP4.87□□□□□ -1.63
C11orf88-204ENST00000529661 CYP4A11Q02928 519 aa4.87□□□□□ -1.63
C11orf88-204ENST00000529661 RPE65Q16518 533 aa4.87□□□□□ -1.63
C11orf88-204ENST00000529661 ZNF667Q5HYK9 610 aa4.87□□□□□ -1.63
C11orf88-204ENST00000529661 ZNF549Q6P9A3 640 aa4.87□□□□□ -1.63
C11orf88-204ENST00000529661 PRSS45Q7RTY3 260 aa4.87□□□□□ -1.63
C11orf88-204ENST00000529661 PXKQ7Z7A4 578 aa4.87□□□□□ -1.63
C11orf88-204ENST00000529661 TMEM174Q8WUU8 243 aa4.87□□□□□ -1.63
C11orf88-204ENST00000529661 SNRNP27Q8WVK2 155 aaKnown RBP4.87□□□□□ -1.63
C11orf88-204ENST00000529661 USP6NLQ92738 828 aa4.87□□□□□ -1.63
C11orf88-204ENST00000529661 SAAL1Q96ER3 474 aa4.87□□□□□ -1.63
C11orf88-204ENST00000529661 ZNF419Q96HQ0 510 aaPredicted RBP4.87□□□□□ -1.63
C11orf88-204ENST00000529661 CLMNQ96JQ2 1002 aa4.87□□□□□ -1.63
C11orf88-204ENST00000529661 WDR83Q9BRX9 315 aaKnown RBP4.87□□□□□ -1.63
C11orf88-204ENST00000529661 ITPAQ9BY32 194 aa4.87□□□□□ -1.63
C11orf88-204ENST00000529661 FRMD8Q9BZ67 464 aaPredicted RBP4.87□□□□□ -1.63
C11orf88-204ENST00000529661 RANBP17Q9H2T7 1088 aaKnown RBP4.87□□□□□ -1.63
C11orf88-204ENST00000529661 ATP8A2Q9NTI2 1148 aa4.87□□□□□ -1.63
C11orf88-204ENST00000529661 CLIC5Q9NZA1 410 aa4.87□□□□□ -1.63
C11orf88-204ENST00000529661 IL1RAPL1Q9NZN1 696 aa4.87□□□□□ -1.63
C11orf88-204ENST00000529661 PEMTQ9UBM1 199 aa4.87□□□□□ -1.63
C11orf88-204ENST00000529661 HSPB7Q9UBY9 170 aa4.87□□□□□ -1.63
C11orf88-204ENST00000529661 GPR34Q9UPC5 381 aa4.87□□□□□ -1.63
C11orf88-204ENST00000529661 CACNA1IQ9P0X4 2223 aa4.87□□□□□ -1.63
C11orf88-204ENST00000529661 TARSL2A2RTX5 802 aaKnown RBP4.86□□□□□ -1.63
C11orf88-204ENST00000529661 KRTAP29-1A8MX34 341 aaPredicted RBP4.86□□□□□ -1.63
C11orf88-204ENST00000529661 IKBKBO14920 756 aa4.86□□□□□ -1.63
C11orf88-204ENST00000529661 STRNO43815 780 aa4.86□□□□□ -1.63
C11orf88-204ENST00000529661 CEP104O60308 925 aa4.86□□□□□ -1.63
C11orf88-204ENST00000529661 ACADMP11310 421 aa4.86□□□□□ -1.63
C11orf88-204ENST00000529661 CD72P21854 359 aa4.86□□□□□ -1.63
C11orf88-204ENST00000529661 ICAM3P32942 547 aa4.86□□□□□ -1.63
C11orf88-204ENST00000529661 SKIV2L2P42285 1042 aaKnown RBP4.86□□□□□ -1.63
C11orf88-204ENST00000529661 PTPN9P43378 593 aa4.86□□□□□ -1.63
C11orf88-204ENST00000529661 EIF3BP55884 814 aaKnown RBP4.86□□□□□ -1.63
C11orf88-204ENST00000529661 PMPCAQ10713 525 aa4.86□□□□□ -1.63
C11orf88-204ENST00000529661 C5orf22Q49AR2 442 aa4.86□□□□□ -1.63
C11orf88-204ENST00000529661 TTC39AQ5SRH9 613 aa4.86□□□□□ -1.63
C11orf88-204ENST00000529661 TMEM268Q5VZI3 342 aa4.86□□□□□ -1.63
C11orf88-204ENST00000529661 TMEM81Q6P7N7 255 aa4.86□□□□□ -1.63
C11orf88-204ENST00000529661 ZNF517Q6ZMY9 492 aaPredicted RBP4.86□□□□□ -1.63
C11orf88-204ENST00000529661 CCDC129Q6ZRS4 1044 aa4.86□□□□□ -1.63
C11orf88-204ENST00000529661 C9orf47Q6ZRZ4 202 aa4.86□□□□□ -1.63
C11orf88-204ENST00000529661 TMEM217Q8N7C4 229 aa4.86□□□□□ -1.63
C11orf88-204ENST00000529661 C11orf65Q8NCR3 313 aa4.86□□□□□ -1.63
C11orf88-204ENST00000529661 KIF1BPQ96EK5 621 aa4.86□□□□□ -1.63
C11orf88-204ENST00000529661 TIGD1Q96MW7 591 aa4.86□□□□□ -1.63
C11orf88-204ENST00000529661 FRG2BQ96QU4 278 aa4.86□□□□□ -1.63
C11orf88-204ENST00000529661 SDF4Q9BRK5 362 aa4.86□□□□□ -1.63
C11orf88-204ENST00000529661 MUC13Q9H3R2 512 aa4.86□□□□□ -1.63
C11orf88-204ENST00000529661 SLC32A1Q9H598 525 aa4.86□□□□□ -1.63
C11orf88-204ENST00000529661 WDR26Q9H7D7 661 aa4.86□□□□□ -1.63
C11orf88-204ENST00000529661 FZD3Q9NPG1 666 aa4.86□□□□□ -1.63
C11orf88-204ENST00000529661 NSMCE4AQ9NXX6 385 aa4.86□□□□□ -1.63
C11orf88-204ENST00000529661 GRHL1Q9NZI5 618 aa4.86□□□□□ -1.63
C11orf88-204ENST00000529661 FBXO40Q9UH90 709 aa4.86□□□□□ -1.63
C11orf88-204ENST00000529661 ICKQ9UPZ9 632 aa4.86□□□□□ -1.63
C11orf88-204ENST00000529661 DHDHQ9UQ10 334 aa4.86□□□□□ -1.63
C11orf88-204ENST00000529661 MST1RQ04912 1400 aa4.86□□□□□ -1.63
C11orf88-204ENST00000529661 PABPN1LA6NDY0 278 aaKnown RBP4.85□□□□□ -1.63
C11orf88-204ENST00000529661 FOXO6A8MYZ6 492 aa4.85□□□□□ -1.63
C11orf88-204ENST00000529661 H0YGN5 161 aa4.85□□□□□ -1.63
C11orf88-204ENST00000529661 MLYCDO95822 493 aa4.85□□□□□ -1.63
C11orf88-204ENST00000529661 DDAH2O95865 285 aa4.85□□□□□ -1.63
C11orf88-204ENST00000529661 ALPLP05186 524 aa4.85□□□□□ -1.63
C11orf88-204ENST00000529661 BSGP35613 385 aa4.85□□□□□ -1.63
C11orf88-204ENST00000529661 CPOXP36551 454 aa4.85□□□□□ -1.63
C11orf88-204ENST00000529661 MLH1P40692 756 aa4.85□□□□□ -1.63
C11orf88-204ENST00000529661 HTR6P50406 440 aa4.85□□□□□ -1.63
C11orf88-204ENST00000529661 BLKP51451 505 aa4.85□□□□□ -1.63
C11orf88-204ENST00000529661 RPL7AP62424 266 aaKnown RBP4.85□□□□□ -1.63
C11orf88-204ENST00000529661 TOMM20Q15388 145 aa4.85□□□□□ -1.63
C11orf88-204ENST00000529661 ODF3L2Q3SX64 289 aa4.85□□□□□ -1.63
C11orf88-204ENST00000529661 TTLL5Q6EMB2 1281 aa4.85□□□□□ -1.63
C11orf88-204ENST00000529661 RRM2BQ7LG56 351 aa4.85□□□□□ -1.63
C11orf88-204ENST00000529661 ZDHHC17Q8IUH5 632 aa4.85□□□□□ -1.63
C11orf88-204ENST00000529661 CCDC105Q8IYK2 499 aa4.85□□□□□ -1.63
C11orf88-204ENST00000529661 PELI3Q8N2H9 469 aa4.85□□□□□ -1.63
C11orf88-204ENST00000529661 HDAC7Q8WUI4 952 aa4.85□□□□□ -1.63
C11orf88-204ENST00000529661 ASB5Q8WWX0 329 aa4.85□□□□□ -1.63
C11orf88-204ENST00000529661 KLHL15Q96M94 604 aa4.85□□□□□ -1.63
C11orf88-204ENST00000529661 TEFMQ96QE5 360 aaKnown RBP4.85□□□□□ -1.63
C11orf88-204ENST00000529661 SPAG4Q9NPE6 437 aa4.85□□□□□ -1.63
C11orf88-204ENST00000529661 SEPT11Q9NVA2 429 aaKnown RBP4.85□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms