RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 SYCE1Q8N0S2 351 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 TTC39CQ8N584 583 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 LZTR1Q8N653 840 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 ARL10Q8N8L6 244 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 NOA1Q8NC60 698 aaKnown RBP4.32□□□□□ -1.72
CD44-226ENST00000527889 B3GALNT2Q8NCR0 500 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 JOSD2Q8TAC2 188 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 URGCPQ8TCY9 931 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 SLC2A14Q8TDB8 520 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 ASB15Q8WXK1 588 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 MYLIPQ8WY64 445 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 SEPT8Q92599 483 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 KRT35Q92764 455 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 N4BP2L2Q92802 583 aaPredicted RBP4.32□□□□□ -1.72
CD44-226ENST00000527889 C18orf8Q96DM3 657 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 VMP1Q96GC9 406 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 MAP6Q96JE9 813 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 TOX2Q96NM4 488 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 MCEEQ96PE7 176 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 TMEM209Q96SK2 561 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 SYT15Q9BQS2 421 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 MED10Q9BTT4 135 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 LHX5Q9H2C1 402 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 EPC1Q9H2F5 836 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 C11orf49Q9H6J7 331 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 SYNCQ9H7C4 482 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 ATP13A1Q9HD20 1204 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 UBN1Q9NPG3 1134 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 RIC8BQ9NVN3 520 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 TMEM161AQ9NX61 479 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 DDX43Q9NXZ2 648 aaKnown RBP4.32□□□□□ -1.72
CD44-226ENST00000527889 HESX1Q9UBX0 185 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 DPP7Q9UHL4 492 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 GTF2A1LQ9UNN4 478 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 RABL2BQ9UNT1 228 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 PRG3Q9Y2Y8 225 aaPredicted RBP4.32□□□□□ -1.72
CD44-226ENST00000527889 PCDHB7Q9Y5E2 793 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 ALG6Q9Y672 507 aa4.32□□□□□ -1.72
CD44-226ENST00000527889 TCF20Q9UGU0 1960 aaKnown RBP4.32□□□□□ -1.72
CD44-226ENST00000527889 UBA6A0AVT1 1052 aaPredicted RBP4.31□□□□□ -1.72
CD44-226ENST00000527889 MED19A0JLT2 244 aaPredicted RBP4.31□□□□□ -1.72
CD44-226ENST00000527889 MYBPHLA2RUH7 354 aa4.31□□□□□ -1.72
CD44-226ENST00000527889 CTAGE15A4D2H0 777 aa4.31□□□□□ -1.72
CD44-226ENST00000527889 TRIM43BA6NCK2 446 aa4.31□□□□□ -1.72
CD44-226ENST00000527889 PRAMEF25A6NGN4 478 aa4.31□□□□□ -1.72
CD44-226ENST00000527889 CAPN8A6NHC0 703 aa4.31□□□□□ -1.72
CD44-226ENST00000527889 CCDC154A6NI56 674 aa4.31□□□□□ -1.72
CD44-226ENST00000527889 NT5C1B-RDH14C9J2C7 533 aa4.31□□□□□ -1.72
CD44-226ENST00000527889 PRRT4C9JH25 899 aa4.31□□□□□ -1.72
CD44-226ENST00000527889 E5RJQ4 531 aa4.31□□□□□ -1.72
CD44-226ENST00000527889 M0QZQ0 153 aa4.31□□□□□ -1.72
CD44-226ENST00000527889 MYO1FO00160 1098 aa4.31□□□□□ -1.72
CD44-226ENST00000527889 HTRA2O43464 458 aaPredicted RBP4.31□□□□□ -1.72
CD44-226ENST00000527889 PROSCO94903 275 aa4.31□□□□□ -1.72
CD44-226ENST00000527889 RHOXF2BP0C7M4 288 aa4.31□□□□□ -1.72
CD44-226ENST00000527889 CTAGE8P0CG41 777 aa4.31□□□□□ -1.72
CD44-226ENST00000527889 ODC1P11926 461 aa4.31□□□□□ -1.72
CD44-226ENST00000527889 TCF4P15884 667 aa4.31□□□□□ -1.72
CD44-226ENST00000527889 TCP1P17987 556 aaKnown RBP4.31□□□□□ -1.72
CD44-226ENST00000527889 SPINK2P20155 84 aa4.31□□□□□ -1.72
CD44-226ENST00000527889 PSMA2P25787 234 aa4.31□□□□□ -1.72
CD44-226ENST00000527889 PIK3CBP42338 1070 aa4.31□□□□□ -1.72
CD44-226ENST00000527889 GABRB2P47870 512 aa4.31□□□□□ -1.72
CD44-226ENST00000527889 AARSP49588 968 aaKnown RBP eCLIP4.31□□□□□ -1.72
CD44-226ENST00000527889 RENBPP51606 427 aa4.31□□□□□ -1.72
CD44-226ENST00000527889 SLC16A1P53985 500 aa4.31□□□□□ -1.72
CD44-226ENST00000527889 CACNA2D1P54289 1103 aa4.31□□□□□ -1.72
CD44-226ENST00000527889 BCAT1P54687 386 aa4.31□□□□□ -1.72
CD44-226ENST00000527889 SNX16P57768 344 aa4.31□□□□□ -1.72
CD44-226ENST00000527889 TAS2R40P59535 323 aa4.31□□□□□ -1.72
CD44-226ENST00000527889 MRPS25P82663 173 aaKnown RBP4.31□□□□□ -1.72
CD44-226ENST00000527889 OGDHQ02218 1023 aa4.31□□□□□ -1.72
CD44-226ENST00000527889 CKAP4Q07065 602 aaKnown RBP4.31□□□□□ -1.72
CD44-226ENST00000527889 DSC1Q08554 894 aa4.31□□□□□ -1.72
CD44-226ENST00000527889 BST2Q10589 180 aaKnown RBP4.31□□□□□ -1.72
CD44-226ENST00000527889 TUBB2AQ13885 445 aa4.31□□□□□ -1.72
CD44-226ENST00000527889 MYBPC3Q14896 1274 aa4.31□□□□□ -1.72
CD44-226ENST00000527889 CNN3Q15417 329 aaKnown RBP4.31□□□□□ -1.72
CD44-226ENST00000527889 KCTD19Q17RG1 926 aaPredicted RBP4.31□□□□□ -1.72
CD44-226ENST00000527889 ANO4Q32M45 955 aa4.31□□□□□ -1.72
CD44-226ENST00000527889 FAM102AQ5T9C2 384 aaPredicted RBP4.31□□□□□ -1.72
CD44-226ENST00000527889 ARHGAP17Q68EM7 881 aa4.31□□□□□ -1.72
CD44-226ENST00000527889 FAM109BQ6ICB4 259 aaPredicted RBP4.31□□□□□ -1.72
CD44-226ENST00000527889 PPP1R2P3Q6NXS1 205 aa4.31□□□□□ -1.72
CD44-226ENST00000527889 PMF1Q6P1K2 205 aa4.31□□□□□ -1.72
CD44-226ENST00000527889 DCUN1D2Q6PH85 259 aa4.31□□□□□ -1.72
CD44-226ENST00000527889 DCLRE1AQ6PJP8 1040 aa4.31□□□□□ -1.72
CD44-226ENST00000527889 LIN28BQ6ZN17 250 aaKnown RBP eCLIP4.31□□□□□ -1.72
CD44-226ENST00000527889 PAQR9Q6ZVX9 377 aa4.31□□□□□ -1.72
CD44-226ENST00000527889 RSRC2Q7L4I2 434 aaKnown RBP4.31□□□□□ -1.72
CD44-226ENST00000527889 TMCO2Q7Z6W1 182 aaPredicted RBP4.31□□□□□ -1.72
CD44-226ENST00000527889 CTAGE6Q86UF2 777 aa4.31□□□□□ -1.72
CD44-226ENST00000527889 MYLK4Q86YV6 388 aaPredicted RBP4.31□□□□□ -1.72
CD44-226ENST00000527889 SLC41A1Q8IVJ1 513 aa4.31□□□□□ -1.72
CD44-226ENST00000527889 CTAGE4Q8IX94 777 aa4.31□□□□□ -1.72
CD44-226ENST00000527889 ABI1Q8IZP0 508 aa4.31□□□□□ -1.72
CD44-226ENST00000527889 FUKQ8N0W3 1084 aa4.31□□□□□ -1.72
CD44-226ENST00000527889 CRYBG2Q8N1P7 616 aa4.31□□□□□ -1.72
CD44-226ENST00000527889 TMEM86AQ8N2M4 240 aa4.31□□□□□ -1.72
CD44-226ENST00000527889 EMC1Q8N766 993 aa4.31□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms