RNA–Protein interactions for RNA: ENST00000526669.6

CD44-224, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5 BASIC

Gene CD44, Length 870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-224ENST00000526669 HMGB4Q8WW32 186 aa13.89□□□□□ -0.19
CD44-224ENST00000526669 NUDCD1Q96RS6 583 aa13.89□□□□□ -0.19
CD44-224ENST00000526669 HEPHQ9BQS7 1158 aa13.89□□□□□ -0.19
CD44-224ENST00000526669 CARD6Q9BX69 1037 aa13.89□□□□□ -0.19
CD44-224ENST00000526669 IL36AQ9UHA7 158 aa13.89□□□□□ -0.19
CD44-224ENST00000526669 AMACRQ9UHK6 382 aa13.89□□□□□ -0.19
CD44-224ENST00000526669 SARDHQ9UL12 918 aa13.89□□□□□ -0.19
CD44-224ENST00000526669 FARP1Q9Y4F1 1045 aaPredicted RBP13.89□□□□□ -0.19
CD44-224ENST00000526669 KPNA3O00505 521 aaPredicted RBP13.88□□□□□ -0.19
CD44-224ENST00000526669 MID1O15344 667 aa13.88□□□□□ -0.19
CD44-224ENST00000526669 GCATO75600 419 aa13.88□□□□□ -0.19
CD44-224ENST00000526669 POP4O95707 220 aaKnown RBP13.88□□□□□ -0.19
CD44-224ENST00000526669 MT-CYBP00156 380 aaPredicted RBP13.88□□□□□ -0.19
CD44-224ENST00000526669 IL1BP01584 269 aa13.88□□□□□ -0.19
CD44-224ENST00000526669 MMP2P08253 660 aa13.88□□□□□ -0.19
CD44-224ENST00000526669 STIP1P31948 543 aaKnown RBP13.88□□□□□ -0.19
CD44-224ENST00000526669 RPL22P35268 128 aaKnown RBP13.88□□□□□ -0.19
CD44-224ENST00000526669 ACTN2P35609 894 aa13.88□□□□□ -0.19
CD44-224ENST00000526669 PTGIRP43119 386 aa13.88□□□□□ -0.19
CD44-224ENST00000526669 MAGEA9P43362 315 aa13.88□□□□□ -0.19
CD44-224ENST00000526669 PXNP49023 591 aaPredicted RBP13.88□□□□□ -0.19
CD44-224ENST00000526669 CLCN5P51795 746 aa13.88□□□□□ -0.19
CD44-224ENST00000526669 RAD51Q06609 339 aa13.88□□□□□ -0.19
CD44-224ENST00000526669 TUBB2AQ13885 445 aa13.88□□□□□ -0.19
CD44-224ENST00000526669 PCSK7Q16549 785 aa13.88□□□□□ -0.19
CD44-224ENST00000526669 ITPRIPL1Q6GPH6 555 aa13.88□□□□□ -0.19
CD44-224ENST00000526669 NCEH1Q6PIU2 408 aa13.88□□□□□ -0.19
CD44-224ENST00000526669 ZNF572Q7Z3I7 529 aaPredicted RBP13.88□□□□□ -0.19
CD44-224ENST00000526669 CAMK1DQ8IU85 385 aa13.88□□□□□ -0.19
CD44-224ENST00000526669 PGBD3Q8N328 593 aa13.88□□□□□ -0.19
CD44-224ENST00000526669 TSTD1Q8NFU3 115 aa13.88□□□□□ -0.19
CD44-224ENST00000526669 ARRDC2Q8TBH0 407 aa13.88□□□□□ -0.19
CD44-224ENST00000526669 GRK7Q8WTQ7 553 aa13.88□□□□□ -0.19
CD44-224ENST00000526669 RTP4Q96DX8 246 aa13.88□□□□□ -0.19
CD44-224ENST00000526669 VAT1Q99536 393 aa13.88□□□□□ -0.19
CD44-224ENST00000526669 GORASP1Q9BQQ3 440 aa13.88□□□□□ -0.19
CD44-224ENST00000526669 TRIM51Q9BSJ1 452 aa13.88□□□□□ -0.19
CD44-224ENST00000526669 TUBB2BQ9BVA1 445 aa13.88□□□□□ -0.19
CD44-224ENST00000526669 MKRN2Q9H000 416 aaKnown RBP13.88□□□□□ -0.19
CD44-224ENST00000526669 SLC25A51Q9H1U9 297 aa13.88□□□□□ -0.19
CD44-224ENST00000526669 GBA3Q9H227 469 aa13.88□□□□□ -0.19
CD44-224ENST00000526669 CD248Q9HCU0 757 aa13.88□□□□□ -0.19
CD44-224ENST00000526669 POLMQ9NP87 494 aaPredicted RBP13.88□□□□□ -0.19
CD44-224ENST00000526669 CD93Q9NPY3 652 aa13.88□□□□□ -0.19
CD44-224ENST00000526669 C11orf16Q9NQ32 467 aa13.88□□□□□ -0.19
CD44-224ENST00000526669 BCCIPQ9P287 314 aaKnown RBP eCLIP13.88□□□□□ -0.19
CD44-224ENST00000526669 TRHDEQ9UKU6 1024 aa13.88□□□□□ -0.19
CD44-224ENST00000526669 PCDHGC4Q9Y5F7 938 aa13.88□□□□□ -0.19
CD44-224ENST00000526669 RALGAPA1Q6GYQ0 2036 aa13.88□□□□□ -0.19
CD44-224ENST00000526669 TTI1O43156 1089 aa13.87□□□□□ -0.19
CD44-224ENST00000526669 OPHN1O60890 802 aa13.87□□□□□ -0.19
CD44-224ENST00000526669 PMPCBO75439 489 aa13.87□□□□□ -0.19
CD44-224ENST00000526669 METTL18O95568 372 aa13.87□□□□□ -0.19
CD44-224ENST00000526669 ECEL1O95672 775 aa13.87□□□□□ -0.19
CD44-224ENST00000526669 GABRG2P18507 467 aa13.87□□□□□ -0.19
CD44-224ENST00000526669 NDUFV2P19404 249 aa13.87□□□□□ -0.19
CD44-224ENST00000526669 CSNK1DP48730 415 aa13.87□□□□□ -0.19
CD44-224ENST00000526669 AP1S1P61966 158 aa13.87□□□□□ -0.19
CD44-224ENST00000526669 RPS14P62263 151 aaKnown RBP13.87□□□□□ -0.19
CD44-224ENST00000526669 SKOR1P84550 965 aa13.87□□□□□ -0.19
CD44-224ENST00000526669 LMNB2Q03252 620 aa13.87□□□□□ -0.19
CD44-224ENST00000526669 NSUN2Q08J23 767 aaKnown RBP eCLIP13.87□□□□□ -0.19
CD44-224ENST00000526669 TRAF2Q12933 501 aa13.87□□□□□ -0.19
CD44-224ENST00000526669 OLIG2Q13516 323 aa13.87□□□□□ -0.19
CD44-224ENST00000526669 ELAVL3Q14576 367 aaKnown RBP13.87□□□□□ -0.19
CD44-224ENST00000526669 PPP1R7Q15435 360 aa13.87□□□□□ -0.19
CD44-224ENST00000526669 P3H1Q32P28 736 aa13.87□□□□□ -0.19
CD44-224ENST00000526669 TMEM31Q5JXX7 168 aa13.87□□□□□ -0.19
CD44-224ENST00000526669 ZNF776Q68DI1 518 aaPredicted RBP13.87□□□□□ -0.19
CD44-224ENST00000526669 ALG1LQ6GMV1 187 aa13.87□□□□□ -0.19
CD44-224ENST00000526669 ANO7Q6IWH7 933 aa13.87□□□□□ -0.19
CD44-224ENST00000526669 TSSK4Q6SA08 328 aa13.87□□□□□ -0.19
CD44-224ENST00000526669 KDELC2Q7Z4H8 507 aa13.87□□□□□ -0.19
CD44-224ENST00000526669 PRPF39Q86UA1 669 aaKnown RBP13.87□□□□□ -0.19
CD44-224ENST00000526669 TMPRSS6Q8IU80 811 aa13.87□□□□□ -0.19
CD44-224ENST00000526669 PAF1Q8N7H5 531 aa13.87□□□□□ -0.19
CD44-224ENST00000526669 LRRN4CLQ8ND94 238 aa13.87□□□□□ -0.19
CD44-224ENST00000526669 PDCD6IPQ8WUM4 868 aaKnown RBP13.87□□□□□ -0.19
CD44-224ENST00000526669 VOPP1Q96AW1 172 aa13.87□□□□□ -0.19
CD44-224ENST00000526669 ARRDC3Q96B67 414 aa13.87□□□□□ -0.19
CD44-224ENST00000526669 IMP4Q96G21 291 aaKnown RBP13.87□□□□□ -0.19
CD44-224ENST00000526669 OXNAD1Q96HP4 312 aaPredicted RBP13.87□□□□□ -0.19
CD44-224ENST00000526669 KLHL32Q96NJ5 620 aa13.87□□□□□ -0.19
CD44-224ENST00000526669 TPSD1Q9BZJ3 242 aa13.87□□□□□ -0.19
CD44-224ENST00000526669 RSPH9Q9H1X1 276 aaPredicted RBP13.87□□□□□ -0.19
CD44-224ENST00000526669 HAUS2Q9NVX0 235 aa13.87□□□□□ -0.19
CD44-224ENST00000526669 PCYOX1Q9UHG3 505 aa13.87□□□□□ -0.19
CD44-224ENST00000526669 PI4KAP42356 2102 aa13.87□□□□□ -0.19
CD44-224ENST00000526669 CTAGE15A4D2H0 777 aa13.86□□□□□ -0.19
CD44-224ENST00000526669 C1QTNF3-AMACRE9PGA6 284 aa13.86□□□□□ -0.19
CD44-224ENST00000526669 ALOX15BO15296 676 aa13.86□□□□□ -0.19
CD44-224ENST00000526669 RAD51CO43502 376 aa13.86□□□□□ -0.19
CD44-224ENST00000526669 RNASEH1O60930 286 aaKnown RBP13.86□□□□□ -0.19
CD44-224ENST00000526669 ZNF189O75820 626 aaPredicted RBP13.86□□□□□ -0.19
CD44-224ENST00000526669 PRNPP04156 253 aa13.86□□□□□ -0.19
CD44-224ENST00000526669 SERPINF2P08697 491 aa13.86□□□□□ -0.19
CD44-224ENST00000526669 CTAGE8P0CG41 777 aa13.86□□□□□ -0.19
CD44-224ENST00000526669 CXCL12P48061 93 aa13.86□□□□□ -0.19
CD44-224ENST00000526669 CCR3P51677 355 aa13.86□□□□□ -0.19
CD44-224ENST00000526669 DGKEP52429 567 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms