RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 BUB1O43683 1085 aa10.32□□□□□ -0.76
VPS28-204ENST00000526054 IL1BP01584 269 aa10.32□□□□□ -0.76
VPS28-204ENST00000526054 CCDC175P0C221 793 aa10.32□□□□□ -0.76
VPS28-204ENST00000526054 ERCC2P18074 760 aa10.32□□□□□ -0.76
VPS28-204ENST00000526054 C5AR1P21730 350 aa10.32□□□□□ -0.76
VPS28-204ENST00000526054 COMTP21964 271 aa10.32□□□□□ -0.76
VPS28-204ENST00000526054 CD38P28907 300 aa10.32□□□□□ -0.76
VPS28-204ENST00000526054 CCR5P51681 352 aa10.32□□□□□ -0.76
VPS28-204ENST00000526054 YBEYP58557 167 aaPredicted RBP10.32□□□□□ -0.76
VPS28-204ENST00000526054 DPYSQ14117 519 aa10.32□□□□□ -0.76
VPS28-204ENST00000526054 POLD3Q15054 466 aaPredicted RBP10.32□□□□□ -0.76
VPS28-204ENST00000526054 COL28A1Q2UY09 1125 aa10.32□□□□□ -0.76
VPS28-204ENST00000526054 PARP15Q460N3 678 aa10.32□□□□□ -0.76
VPS28-204ENST00000526054 SLC45A4Q5BKX6 768 aa10.32□□□□□ -0.76
VPS28-204ENST00000526054 LRRC38Q5VT99 294 aa10.32□□□□□ -0.76
VPS28-204ENST00000526054 RETSATQ6NUM9 610 aa10.32□□□□□ -0.76
VPS28-204ENST00000526054 DHRS13Q6UX07 377 aa10.32□□□□□ -0.76
VPS28-204ENST00000526054 DAAM2Q86T65 1068 aa10.32□□□□□ -0.76
VPS28-204ENST00000526054 ZNF354CQ86Y25 554 aa10.32□□□□□ -0.76
VPS28-204ENST00000526054 MARCH9Q86YJ5 346 aa10.32□□□□□ -0.76
VPS28-204ENST00000526054 GATAD2AQ86YP4 633 aa10.32□□□□□ -0.76
VPS28-204ENST00000526054 CPNE8Q86YQ8 564 aa10.32□□□□□ -0.76
VPS28-204ENST00000526054 UMODL1-AS1Q8N2C9 162 aa10.32□□□□□ -0.76
VPS28-204ENST00000526054 KCTD6Q8NC69 237 aa10.32□□□□□ -0.76
VPS28-204ENST00000526054 OR7D4Q8NG98 312 aa10.32□□□□□ -0.76
VPS28-204ENST00000526054 OR14C36Q8NHC7 312 aa10.32□□□□□ -0.76
VPS28-204ENST00000526054 TPCN2Q8NHX9 752 aa10.32□□□□□ -0.76
VPS28-204ENST00000526054 PTPRN2Q92932 1015 aa10.32□□□□□ -0.76
VPS28-204ENST00000526054 SERAC1Q96JX3 654 aa10.32□□□□□ -0.76
VPS28-204ENST00000526054 CSPG4P5Q96PW8 444 aa10.32□□□□□ -0.76
VPS28-204ENST00000526054 ZNF670Q9BS34 389 aa10.32□□□□□ -0.76
VPS28-204ENST00000526054 CALN1Q9BXU9 219 aa10.32□□□□□ -0.76
VPS28-204ENST00000526054 LACRTQ9GZZ8 138 aa10.32□□□□□ -0.76
VPS28-204ENST00000526054 EBF2Q9HAK2 575 aa10.32□□□□□ -0.76
VPS28-204ENST00000526054 GDF3Q9NR23 364 aa10.32□□□□□ -0.76
VPS28-204ENST00000526054 NDFIP2Q9NV92 336 aa10.32□□□□□ -0.76
VPS28-204ENST00000526054 KLHL11Q9NVR0 708 aa10.32□□□□□ -0.76
VPS28-204ENST00000526054 DDX56Q9NY93 547 aaKnown RBP10.32□□□□□ -0.76
VPS28-204ENST00000526054 CWC15Q9P013 229 aaKnown RBP10.32□□□□□ -0.76
VPS28-204ENST00000526054 DKK4Q9UBT3 224 aa10.32□□□□□ -0.76
VPS28-204ENST00000526054 VPS51Q9UID3 782 aa10.32□□□□□ -0.76
VPS28-204ENST00000526054 SLCO3A1Q9UIG8 710 aa10.32□□□□□ -0.76
VPS28-204ENST00000526054 TPX2Q9ULW0 747 aaKnown RBP10.32□□□□□ -0.76
VPS28-204ENST00000526054 HPCAL4Q9UM19 191 aa10.32□□□□□ -0.76
VPS28-204ENST00000526054 ITPR1Q14643 2758 aa10.31□□□□□ -0.76
VPS28-204ENST00000526054 CXorf51AA0A1B0GTR3 108 aa10.31□□□□□ -0.76
VPS28-204ENST00000526054 MACROD2A1Z1Q3 448 aa10.31□□□□□ -0.76
VPS28-204ENST00000526054 LRRD1A4D1F6 860 aa10.31□□□□□ -0.76
VPS28-204ENST00000526054 ZSCAN5CA6NGD5 496 aaPredicted RBP10.31□□□□□ -0.76
VPS28-204ENST00000526054 RASA4BC9J798 803 aa10.31□□□□□ -0.76
VPS28-204ENST00000526054 CBX4O00257 560 aa10.31□□□□□ -0.76
VPS28-204ENST00000526054 RASA4O43374 803 aa10.31□□□□□ -0.76
VPS28-204ENST00000526054 KRT86O43790 486 aa10.31□□□□□ -0.76
VPS28-204ENST00000526054 SNAP91O60641 907 aa10.31□□□□□ -0.76
VPS28-204ENST00000526054 KRT1P04264 644 aa10.31□□□□□ -0.76
VPS28-204ENST00000526054 WNT1P04628 370 aa10.31□□□□□ -0.76
VPS28-204ENST00000526054 ITGAVP06756 1048 aa10.31□□□□□ -0.76
VPS28-204ENST00000526054 TNNT1P13805 278 aa10.31□□□□□ -0.76
VPS28-204ENST00000526054 VAV1P15498 845 aa10.31□□□□□ -0.76
VPS28-204ENST00000526054 EPHA8P29322 1005 aaPredicted RBP10.31□□□□□ -0.76
VPS28-204ENST00000526054 SERPINB6P35237 376 aa10.31□□□□□ -0.76
VPS28-204ENST00000526054 ARRB1P49407 418 aaPredicted RBP10.31□□□□□ -0.76
VPS28-204ENST00000526054 VASPP50552 380 aaPredicted RBP10.31□□□□□ -0.76
VPS28-204ENST00000526054 CLCN6P51797 869 aa10.31□□□□□ -0.76
VPS28-204ENST00000526054 NDST2P52849 883 aa10.31□□□□□ -0.76
VPS28-204ENST00000526054 GEMIN4P57678 1058 aaKnown RBP10.31□□□□□ -0.76
VPS28-204ENST00000526054 PPP2CBP62714 309 aa10.31□□□□□ -0.76
VPS28-204ENST00000526054 PPP2CAP67775 309 aa10.31□□□□□ -0.76
VPS28-204ENST00000526054 DPYSL3Q14195 570 aa10.31□□□□□ -0.76
VPS28-204ENST00000526054 SMAD1Q15797 465 aaKnown RBP10.31□□□□□ -0.76
VPS28-204ENST00000526054 PRAMEF14Q5SWL7 426 aa10.31□□□□□ -0.76
VPS28-204ENST00000526054 TMCO3Q6UWJ1 677 aa10.31□□□□□ -0.76
VPS28-204ENST00000526054 DSG4Q86SJ6 1040 aa10.31□□□□□ -0.76
VPS28-204ENST00000526054 PDZD3Q86UT5 571 aa10.31□□□□□ -0.76
VPS28-204ENST00000526054 VSIG1Q86XK7 387 aa10.31□□□□□ -0.76
VPS28-204ENST00000526054 SYCE1Q8N0S2 351 aa10.31□□□□□ -0.76
VPS28-204ENST00000526054 LZTR1Q8N653 840 aa10.31□□□□□ -0.76
VPS28-204ENST00000526054 FAM71BQ8TC56 605 aa10.31□□□□□ -0.76
VPS28-204ENST00000526054 TSC1Q92574 1164 aa10.31□□□□□ -0.76
VPS28-204ENST00000526054 ARHGEF2Q92974 986 aaKnown RBP10.31□□□□□ -0.76
VPS28-204ENST00000526054 CNDP2Q96KP4 475 aaKnown RBP10.31□□□□□ -0.76
VPS28-204ENST00000526054 FAM129BQ96TA1 746 aa10.31□□□□□ -0.76
VPS28-204ENST00000526054 PSMB7Q99436 277 aa10.31□□□□□ -0.76
VPS28-204ENST00000526054 SALL4Q9UJQ4 1053 aa10.31□□□□□ -0.76
VPS28-204ENST00000526054 HS3ST2Q9Y278 367 aa10.31□□□□□ -0.76
VPS28-204ENST00000526054 SBDSQ9Y3A5 250 aaKnown RBP eCLIP10.31□□□□□ -0.76
VPS28-204ENST00000526054 HYOU1Q9Y4L1 999 aa10.31□□□□□ -0.76
VPS28-204ENST00000526054 ALG6Q9Y672 507 aa10.31□□□□□ -0.76
VPS28-204ENST00000526054 GOLGA4Q13439 2230 aaKnown RBP10.31□□□□□ -0.76
VPS28-204ENST00000526054 SHROOM3Q8TF72 1996 aa10.3□□□□□ -0.76
VPS28-204ENST00000526054 TBC1D3DA0A087WVF3 549 aa10.3□□□□□ -0.76
VPS28-204ENST00000526054 TBC1D3IA0A087WXS9 549 aa10.3□□□□□ -0.76
VPS28-204ENST00000526054 TBC1D3EA0A087X179 549 aa10.3□□□□□ -0.76
VPS28-204ENST00000526054 TBC1D3KA0A087X1G2 549 aa10.3□□□□□ -0.76
VPS28-204ENST00000526054 A0A1W2PR77 199 aa10.3□□□□□ -0.76
VPS28-204ENST00000526054 TBC1D3FA6NER0 549 aaPredicted RBP10.3□□□□□ -0.76
VPS28-204ENST00000526054 TRABD2BA6NFA1 517 aa10.3□□□□□ -0.76
VPS28-204ENST00000526054 ARHGAP42A6NI28 874 aa10.3□□□□□ -0.76
VPS28-204ENST00000526054 ZNF487B1APH4 448 aa10.3□□□□□ -0.76
VPS28-204ENST00000526054 TBC1D3LB9A6J9 549 aa10.3□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms