RNA–Protein interactions for RNA: ENST00000526044.5

USP48-211, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 549 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-211ENST00000526044 TRIM43BA6NCK2 446 aa4.82□□□□□ -1.64
USP48-211ENST00000526044 MYMKA6NI61 221 aa4.82□□□□□ -1.64
USP48-211ENST00000526044 LINC00473A8K010 186 aa4.82□□□□□ -1.64
USP48-211ENST00000526044 TMEM233B4DJY2 109 aa4.82□□□□□ -1.64
USP48-211ENST00000526044 ASAP2O43150 1006 aa4.82□□□□□ -1.64
USP48-211ENST00000526044 ONECUT2O95948 504 aa4.82□□□□□ -1.64
USP48-211ENST00000526044 RPN1P04843 607 aaKnown RBP4.82□□□□□ -1.64
USP48-211ENST00000526044 ELFN1P0C7U0 828 aa4.82□□□□□ -1.64
USP48-211ENST00000526044 IDEP14735 1019 aa4.82□□□□□ -1.64
USP48-211ENST00000526044 RPL17P18621 184 aaKnown RBP4.82□□□□□ -1.64
USP48-211ENST00000526044 PTH2RP49190 550 aa4.82□□□□□ -1.64
USP48-211ENST00000526044 POLGP54098 1239 aaPredicted RBP4.82□□□□□ -1.64
USP48-211ENST00000526044 SOX10P56693 466 aa4.82□□□□□ -1.64
USP48-211ENST00000526044 PPFIA1Q13136 1202 aa4.82□□□□□ -1.64
USP48-211ENST00000526044 EIF2B5Q13144 721 aaKnown RBP4.82□□□□□ -1.64
USP48-211ENST00000526044 PNOCQ13519 176 aa4.82□□□□□ -1.64
USP48-211ENST00000526044 SEMA5AQ13591 1074 aa4.82□□□□□ -1.64
USP48-211ENST00000526044 CUL4BQ13620 913 aa4.82□□□□□ -1.64
USP48-211ENST00000526044 GIT2Q14161 759 aa4.82□□□□□ -1.64
USP48-211ENST00000526044 GALEQ14376 348 aa4.82□□□□□ -1.64
USP48-211ENST00000526044 BRD3Q15059 726 aa4.82□□□□□ -1.64
USP48-211ENST00000526044 POSTNQ15063 836 aa4.82□□□□□ -1.64
USP48-211ENST00000526044 FAM153CQ494X1 144 aa4.82□□□□□ -1.64
USP48-211ENST00000526044 CCDC183Q5T5S1 534 aa4.82□□□□□ -1.64
USP48-211ENST00000526044 DCAF12L1Q5VU92 463 aa4.82□□□□□ -1.64
USP48-211ENST00000526044 PLA2G4FQ68DD2 849 aa4.82□□□□□ -1.64
USP48-211ENST00000526044 CAVIN1Q6NZI2 390 aaKnown RBP4.82□□□□□ -1.64
USP48-211ENST00000526044 FBXO42Q6P3S6 717 aa4.82□□□□□ -1.64
USP48-211ENST00000526044 NFRKBQ6P4R8 1299 aa4.82□□□□□ -1.64
USP48-211ENST00000526044 MTHFD1LQ6UB35 978 aa4.82□□□□□ -1.64
USP48-211ENST00000526044 ZNF551Q7Z340 670 aaPredicted RBP4.82□□□□□ -1.64
USP48-211ENST00000526044 GPBP1Q86WP2 473 aa4.82□□□□□ -1.64
USP48-211ENST00000526044 CCDC65Q8IXS2 484 aa4.82□□□□□ -1.64
USP48-211ENST00000526044 SLC15A3Q8IY34 581 aa4.82□□□□□ -1.64
USP48-211ENST00000526044 METTL13Q8N6R0 699 aa4.82□□□□□ -1.64
USP48-211ENST00000526044 MCPH1Q8NEM0 835 aa4.82□□□□□ -1.64
USP48-211ENST00000526044 LRRC15Q8TF66 581 aa4.82□□□□□ -1.64
USP48-211ENST00000526044 TRAPPC12Q8WVT3 735 aa4.82□□□□□ -1.64
USP48-211ENST00000526044 TCP11Q8WWU5 503 aa4.82□□□□□ -1.64
USP48-211ENST00000526044 NELL1Q92832 810 aa4.82□□□□□ -1.64
USP48-211ENST00000526044 SMARCE1Q969G3 411 aa4.82□□□□□ -1.64
USP48-211ENST00000526044 TRIM43Q96BQ3 446 aaPredicted RBP4.82□□□□□ -1.64
USP48-211ENST00000526044 TIFAQ96CG3 184 aa4.82□□□□□ -1.64
USP48-211ENST00000526044 DNAJC19Q96DA6 116 aa4.82□□□□□ -1.64
USP48-211ENST00000526044 UROC1Q96N76 676 aa4.82□□□□□ -1.64
USP48-211ENST00000526044 HAPLN3Q96S86 360 aa4.82□□□□□ -1.64
USP48-211ENST00000526044 TIMP4Q99727 224 aa4.82□□□□□ -1.64
USP48-211ENST00000526044 TIPINQ9BVW5 301 aa4.82□□□□□ -1.64
USP48-211ENST00000526044 NUP62CLQ9H1M0 184 aa4.82□□□□□ -1.64
USP48-211ENST00000526044 BLZF1Q9H2G9 400 aa4.82□□□□□ -1.64
USP48-211ENST00000526044 CLSTN2Q9H4D0 955 aa4.82□□□□□ -1.64
USP48-211ENST00000526044 ZHX3Q9H4I2 956 aa4.82□□□□□ -1.64
USP48-211ENST00000526044 POLD4Q9HCU8 107 aa4.82□□□□□ -1.64
USP48-211ENST00000526044 STARD7Q9NQZ5 370 aa4.82□□□□□ -1.64
USP48-211ENST00000526044 ARHGEF3Q9NR81 526 aa4.82□□□□□ -1.64
USP48-211ENST00000526044 SEMA4GQ9NTN9 838 aa4.82□□□□□ -1.64
USP48-211ENST00000526044 SERTAD4Q9NUC0 356 aa4.82□□□□□ -1.64
USP48-211ENST00000526044 PANK4Q9NVE7 773 aa4.82□□□□□ -1.64
USP48-211ENST00000526044 AFF4Q9UHB7 1163 aaKnown RBP4.82□□□□□ -1.64
USP48-211ENST00000526044 ST3GAL5Q9UNP4 418 aa4.82□□□□□ -1.64
USP48-211ENST00000526044 TRIP12Q14669 1992 aaPredicted RBP4.82□□□□□ -1.64
USP48-211ENST00000526044 GRIN2DO15399 1336 aa4.81□□□□□ -1.64
USP48-211ENST00000526044 IGKV6-21A0A0C4DH24 114 aa4.81□□□□□ -1.64
USP48-211ENST00000526044 SMIM35A0A1B0GVV1 85 aa4.81□□□□□ -1.64
USP48-211ENST00000526044 PVALEFA0A1B0GWK0 134 aa4.81□□□□□ -1.64
USP48-211ENST00000526044 MBD3L4A6NDZ8 208 aaPredicted RBP4.81□□□□□ -1.64
USP48-211ENST00000526044 MBD3L3A6NE82 208 aaPredicted RBP4.81□□□□□ -1.64
USP48-211ENST00000526044 PYCARD-AS1I3L0S3 204 aa4.81□□□□□ -1.64
USP48-211ENST00000526044 USO1O60763 962 aaKnown RBP4.81□□□□□ -1.64
USP48-211ENST00000526044 GAP43P17677 238 aa4.81□□□□□ -1.64
USP48-211ENST00000526044 WT1P19544 449 aaPredicted RBP4.81□□□□□ -1.64
USP48-211ENST00000526044 CASP1P29466 404 aa4.81□□□□□ -1.64
USP48-211ENST00000526044 ARL2P36404 184 aa4.81□□□□□ -1.64
USP48-211ENST00000526044 CDK7P50613 346 aa4.81□□□□□ -1.64
USP48-211ENST00000526044 PDE6CP51160 858 aa4.81□□□□□ -1.64
USP48-211ENST00000526044 PEX3P56589 373 aa4.81□□□□□ -1.64
USP48-211ENST00000526044 ASIC1P78348 528 aa4.81□□□□□ -1.64
USP48-211ENST00000526044 MXD4Q14582 209 aaPredicted RBP4.81□□□□□ -1.64
USP48-211ENST00000526044 PTGISQ16647 500 aa4.81□□□□□ -1.64
USP48-211ENST00000526044 ZIK1Q3SY52 487 aaPredicted RBP4.81□□□□□ -1.64
USP48-211ENST00000526044 HERC4Q5GLZ8 1057 aaPredicted RBP4.81□□□□□ -1.64
USP48-211ENST00000526044 C3orf38Q5JPI3 329 aa4.81□□□□□ -1.64
USP48-211ENST00000526044 MARCH8Q5T0T0 291 aa4.81□□□□□ -1.64
USP48-211ENST00000526044 TSTD2Q5T7W7 516 aa4.81□□□□□ -1.64
USP48-211ENST00000526044 ISM2Q6H9L7 571 aa4.81□□□□□ -1.64
USP48-211ENST00000526044 ZNF280DQ6N043 979 aa4.81□□□□□ -1.64
USP48-211ENST00000526044 SASS6Q6UVJ0 657 aa4.81□□□□□ -1.64
USP48-211ENST00000526044 SLC39A5Q6ZMH5 540 aa4.81□□□□□ -1.64
USP48-211ENST00000526044 UNC13DQ70J99 1090 aa4.81□□□□□ -1.64
USP48-211ENST00000526044 MAVSQ7Z434 540 aa4.81□□□□□ -1.64
USP48-211ENST00000526044 PCGF5Q86SE9 256 aa4.81□□□□□ -1.64
USP48-211ENST00000526044 SESTD1Q86VW0 696 aa4.81□□□□□ -1.64
USP48-211ENST00000526044 PRIMA1Q86XR5 153 aa4.81□□□□□ -1.64
USP48-211ENST00000526044 MYCT1Q8N699 235 aa4.81□□□□□ -1.64
USP48-211ENST00000526044 BOLLQ8N9W6 283 aaKnown RBP4.81□□□□□ -1.64
USP48-211ENST00000526044 FAM98AQ8NCA5 519 aaKnown RBP4.81□□□□□ -1.64
USP48-211ENST00000526044 OR56A3Q8NH54 315 aa4.81□□□□□ -1.64
USP48-211ENST00000526044 DNAJB3Q8WWF6 145 aa4.81□□□□□ -1.64
USP48-211ENST00000526044 PRPF31Q8WWY3 499 aaKnown RBP4.81□□□□□ -1.64
USP48-211ENST00000526044 ATG4AQ8WYN0 398 aa4.81□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms