RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 KCTD4Q8WVF5 259 aa15.02□□□□□ -0.01
NUP54-217ENST00000514987 SCG3Q8WXD2 468 aaKnown RBP15.02□□□□□ -0.01
NUP54-217ENST00000514987 ELMO2Q96JJ3 720 aa15.02□□□□□ -0.01
NUP54-217ENST00000514987 HHIPL1Q96JK4 782 aa15.02□□□□□ -0.01
NUP54-217ENST00000514987 RTKNQ9BST9 563 aa15.02□□□□□ -0.01
NUP54-217ENST00000514987 NOL6Q9H6R4 1146 aaKnown RBP15.02□□□□□ -0.01
NUP54-217ENST00000514987 ELAC1Q9H777 363 aaKnown RBP15.02□□□□□ -0.01
NUP54-217ENST00000514987 SP110Q9HB58 689 aa15.02□□□□□ -0.01
NUP54-217ENST00000514987 NDFIP2Q9NV92 336 aa15.02□□□□□ -0.01
NUP54-217ENST00000514987 TMEM161AQ9NX61 479 aa15.02□□□□□ -0.01
NUP54-217ENST00000514987 CPSF2Q9P2I0 782 aaKnown RBP15.02□□□□□ -0.01
NUP54-217ENST00000514987 A0A088AWK7 358 aa15.01□□□□□ -0.01
NUP54-217ENST00000514987 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP15.01□□□□□ -0.01
NUP54-217ENST00000514987 TMEM88BA6NKF7 163 aa15.01□□□□□ -0.01
NUP54-217ENST00000514987 DRGXA6NNA5 263 aa15.01□□□□□ -0.01
NUP54-217ENST00000514987 F8W810 466 aa15.01□□□□□ -0.01
NUP54-217ENST00000514987 SLC7A4O43246 635 aa15.01□□□□□ -0.01
NUP54-217ENST00000514987 MAP3K7O43318 606 aa15.01□□□□□ -0.01
NUP54-217ENST00000514987 TBX10O75333 385 aa15.01□□□□□ -0.01
NUP54-217ENST00000514987 COX4I1P13073 169 aa15.01□□□□□ -0.01
NUP54-217ENST00000514987 SAT1P21673 171 aa15.01□□□□□ -0.01
NUP54-217ENST00000514987 GMPRP36959 345 aa15.01□□□□□ -0.01
NUP54-217ENST00000514987 SLC1A2P43004 574 aa15.01□□□□□ -0.01
NUP54-217ENST00000514987 YBEYP58557 167 aaPredicted RBP15.01□□□□□ -0.01
NUP54-217ENST00000514987 BTKQ06187 659 aa15.01□□□□□ -0.01
NUP54-217ENST00000514987 RING1Q06587 406 aa15.01□□□□□ -0.01
NUP54-217ENST00000514987 USP4Q13107 963 aa15.01□□□□□ -0.01
NUP54-217ENST00000514987 KLF10Q13118 480 aa15.01□□□□□ -0.01
NUP54-217ENST00000514987 CTBP1Q13363 440 aa15.01□□□□□ -0.01
NUP54-217ENST00000514987 MRPL58Q14197 206 aaKnown RBP15.01□□□□□ -0.01
NUP54-217ENST00000514987 BTG3Q14201 252 aaPredicted RBP15.01□□□□□ -0.01
NUP54-217ENST00000514987 DDR2Q16832 855 aa15.01□□□□□ -0.01
NUP54-217ENST00000514987 FAM83EQ2M2I3 478 aa15.01□□□□□ -0.01
NUP54-217ENST00000514987 CTXN3Q4LDR2 81 aa15.01□□□□□ -0.01
NUP54-217ENST00000514987 ZNF470Q6ECI4 717 aa15.01□□□□□ -0.01
NUP54-217ENST00000514987 PIWIL4Q7Z3Z4 852 aaKnown RBP15.01□□□□□ -0.01
NUP54-217ENST00000514987 TMC7Q7Z402 723 aa15.01□□□□□ -0.01
NUP54-217ENST00000514987 DENND6AQ8IWF6 608 aa15.01□□□□□ -0.01
NUP54-217ENST00000514987 CENPLQ8N0S6 344 aaPredicted RBP15.01□□□□□ -0.01
NUP54-217ENST00000514987 AFAP1L2Q8N4X5 818 aa15.01□□□□□ -0.01
NUP54-217ENST00000514987 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP15.01□□□□□ -0.01
NUP54-217ENST00000514987 CPSF7Q8N684 471 aaKnown RBP15.01□□□□□ -0.01
NUP54-217ENST00000514987 SPPL2BQ8TCT7 592 aa15.01□□□□□ -0.01
NUP54-217ENST00000514987 PEX13Q92968 403 aa15.01□□□□□ -0.01
NUP54-217ENST00000514987 FBXO32Q969P5 355 aa15.01□□□□□ -0.01
NUP54-217ENST00000514987 ZNF419Q96HQ0 510 aaPredicted RBP15.01□□□□□ -0.01
NUP54-217ENST00000514987 FAR2Q96K12 515 aa15.01□□□□□ -0.01
NUP54-217ENST00000514987 SPATA17Q96L03 361 aa15.01□□□□□ -0.01
NUP54-217ENST00000514987 PANX3Q96QZ0 392 aa15.01□□□□□ -0.01
NUP54-217ENST00000514987 NCKIPSDQ9NZQ3 722 aa15.01□□□□□ -0.01
NUP54-217ENST00000514987 GMIPQ9P107 970 aa15.01□□□□□ -0.01
NUP54-217ENST00000514987 THSD7BQ9C0I4 1608 aa15□□□□□ -0.01
NUP54-217ENST00000514987 CCDC78A2IDD5 438 aa15□□□□□ -0.01
NUP54-217ENST00000514987 TRPC5OSA6NMA1 111 aa15□□□□□ -0.01
NUP54-217ENST00000514987 TK2O00142 265 aa15□□□□□ -0.01
NUP54-217ENST00000514987 PIGNO95427 931 aa15□□□□□ -0.01
NUP54-217ENST00000514987 SBK3P0C264 359 aa15□□□□□ -0.01
NUP54-217ENST00000514987 CPB1P15086 417 aa15□□□□□ -0.01
NUP54-217ENST00000514987 HOXB8P17481 243 aaPredicted RBP15□□□□□ -0.01
NUP54-217ENST00000514987 ATP5F1P24539 256 aaPredicted RBP15□□□□□ -0.01
NUP54-217ENST00000514987 HOXD10P28358 340 aa15□□□□□ -0.01
NUP54-217ENST00000514987 SLC26A3P40879 764 aa15□□□□□ -0.01
NUP54-217ENST00000514987 LEPRP48357 1165 aaKnown RBP15□□□□□ -0.01
NUP54-217ENST00000514987 MAPKAPK2P49137 400 aa15□□□□□ -0.01
NUP54-217ENST00000514987 NAGLUP54802 743 aa15□□□□□ -0.01
NUP54-217ENST00000514987 MPP1Q00013 466 aa15□□□□□ -0.01
NUP54-217ENST00000514987 BLMHQ13867 455 aa15□□□□□ -0.01
NUP54-217ENST00000514987 ARL13AQ5H913 290 aaPredicted RBP15□□□□□ -0.01
NUP54-217ENST00000514987 VWA5B1Q5TIE3 1220 aa15□□□□□ -0.01
NUP54-217ENST00000514987 AGAP9Q5VTM2 703 aa15□□□□□ -0.01
NUP54-217ENST00000514987 KLC3Q6P597 504 aa15□□□□□ -0.01
NUP54-217ENST00000514987 PGM2L1Q6PCE3 622 aa15□□□□□ -0.01
NUP54-217ENST00000514987 TRAF7Q6Q0C0 670 aa15□□□□□ -0.01
NUP54-217ENST00000514987 GPATCH11Q8N954 259 aa15□□□□□ -0.01
NUP54-217ENST00000514987 C2orf15Q8WU43 125 aaKnown RBP15□□□□□ -0.01
NUP54-217ENST00000514987 HMCESQ96FZ2 354 aa15□□□□□ -0.01
NUP54-217ENST00000514987 GPR78Q96P69 363 aa15□□□□□ -0.01
NUP54-217ENST00000514987 NT5MQ9NPB1 228 aa15□□□□□ -0.01
NUP54-217ENST00000514987 MTPAPQ9NVV4 582 aaKnown RBP eCLIP15□□□□□ -0.01
NUP54-217ENST00000514987 NMRK1Q9NWW6 199 aa15□□□□□ -0.01
NUP54-217ENST00000514987 NDE1Q9NXR1 346 aa15□□□□□ -0.01
NUP54-217ENST00000514987 NUDT5Q9UKK9 219 aa15□□□□□ -0.01
NUP54-217ENST00000514987 LRCH1Q9Y2L9 728 aa15□□□□□ -0.01
NUP54-217ENST00000514987 DOCK4Q8N1I0 1966 aa14.99□□□□□ -0.01
NUP54-217ENST00000514987 DCXO43602 365 aa14.99□□□□□ -0.01
NUP54-217ENST00000514987 B4GALT3O60512 393 aa14.99□□□□□ -0.01
NUP54-217ENST00000514987 IGLV3-27P01718 113 aa14.99□□□□□ -0.01
NUP54-217ENST00000514987 RBP1P09455 135 aa14.99□□□□□ -0.01
NUP54-217ENST00000514987 ANPEPP15144 967 aa14.99□□□□□ -0.01
NUP54-217ENST00000514987 TFEBP19484 476 aa14.99□□□□□ -0.01
NUP54-217ENST00000514987 SESN3P58005 492 aa14.99□□□□□ -0.01
NUP54-217ENST00000514987 TAS2R39P59534 338 aa14.99□□□□□ -0.01
NUP54-217ENST00000514987 MRPS35P82673 323 aaKnown RBP14.99□□□□□ -0.01
NUP54-217ENST00000514987 SLC25A3Q00325 362 aa14.99□□□□□ -0.01
NUP54-217ENST00000514987 ITKQ08881 620 aa14.99□□□□□ -0.01
NUP54-217ENST00000514987 EFEMP1Q12805 493 aa14.99□□□□□ -0.01
NUP54-217ENST00000514987 ELAVL2Q12926 359 aaKnown RBP14.99□□□□□ -0.01
NUP54-217ENST00000514987 HERC3Q15034 1050 aa14.99□□□□□ -0.01
NUP54-217ENST00000514987 SLC14A2Q15849 920 aa14.99□□□□□ -0.01
NUP54-217ENST00000514987 SLC9B1Q4ZJI4 515 aa14.99□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms