RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 SPAG4Q9NPE6 437 aa12.79□□□□□ -0.36
USP53-209ENST00000514665 ARHGEF4Q9NR80 690 aa12.79□□□□□ -0.36
USP53-209ENST00000514665 FAM105AQ9NUU6 356 aa12.79□□□□□ -0.36
USP53-209ENST00000514665 ZNHIT2Q9UHR6 403 aa12.79□□□□□ -0.36
USP53-209ENST00000514665 SLC25A13Q9UJS0 675 aa12.79□□□□□ -0.36
USP53-209ENST00000514665 INVSQ9Y283 1065 aa12.79□□□□□ -0.36
USP53-209ENST00000514665 IPPQ9Y573 584 aa12.79□□□□□ -0.36
USP53-209ENST00000514665 ATXN2Q99700 1313 aaKnown RBP12.79□□□□□ -0.36
USP53-209ENST00000514665 C2CD4BA6NLJ0 364 aa12.79□□□□□ -0.36
USP53-209ENST00000514665 TRIM38O00635 465 aa12.79□□□□□ -0.36
USP53-209ENST00000514665 RTN3O95197 1032 aaPredicted RBP12.79□□□□□ -0.36
USP53-209ENST00000514665 RPLP2P05387 115 aaKnown RBP12.79□□□□□ -0.36
USP53-209ENST00000514665 DARSP14868 501 aaKnown RBP12.79□□□□□ -0.36
USP53-209ENST00000514665 BLVRAP53004 296 aa12.79□□□□□ -0.36
USP53-209ENST00000514665 RABGGTBP53611 331 aa12.79□□□□□ -0.36
USP53-209ENST00000514665 PLD1Q13393 1074 aa12.79□□□□□ -0.36
USP53-209ENST00000514665 GALNT3Q14435 633 aa12.79□□□□□ -0.36
USP53-209ENST00000514665 ARL13AQ5H913 290 aaPredicted RBP12.79□□□□□ -0.36
USP53-209ENST00000514665 POTEHQ6S545 545 aa12.79□□□□□ -0.36
USP53-209ENST00000514665 SLC26A9Q7LBE3 791 aa12.79□□□□□ -0.36
USP53-209ENST00000514665 HERC6Q8IVU3 1022 aa12.79□□□□□ -0.36
USP53-209ENST00000514665 ZCCHC7Q8N3Z6 543 aaKnown RBP12.79□□□□□ -0.36
USP53-209ENST00000514665 ARRDC4Q8NCT1 418 aa12.79□□□□□ -0.36
USP53-209ENST00000514665 TSPAN14Q8NG11 270 aa12.79□□□□□ -0.36
USP53-209ENST00000514665 ASB8Q9H765 288 aa12.79□□□□□ -0.36
USP53-209ENST00000514665 GLOD4Q9HC38 313 aa12.79□□□□□ -0.36
USP53-209ENST00000514665 TRPC4Q9UBN4 977 aa12.79□□□□□ -0.36
USP53-209ENST00000514665 PADI4Q9UM07 663 aa12.79□□□□□ -0.36
USP53-209ENST00000514665 RPL26L1Q9UNX3 145 aaKnown RBP12.79□□□□□ -0.36
USP53-209ENST00000514665 C15orf38-AP3S2A0A0A6YYH1 394 aa12.78□□□□□ -0.36
USP53-209ENST00000514665 SOWAHBA6NEL2 793 aa12.78□□□□□ -0.36
USP53-209ENST00000514665 PAGE1O75459 146 aa12.78□□□□□ -0.36
USP53-209ENST00000514665 FGFR1P11362 822 aa12.78□□□□□ -0.36
USP53-209ENST00000514665 MLNP12872 115 aa12.78□□□□□ -0.36
USP53-209ENST00000514665 SP100P23497 879 aaPredicted RBP12.78□□□□□ -0.36
USP53-209ENST00000514665 CA9Q16790 459 aa12.78□□□□□ -0.36
USP53-209ENST00000514665 ARHGAP15Q53QZ3 475 aa12.78□□□□□ -0.36
USP53-209ENST00000514665 TMEM26Q6ZUK4 368 aa12.78□□□□□ -0.36
USP53-209ENST00000514665 ARPINQ7Z6K5 226 aa12.78□□□□□ -0.36
USP53-209ENST00000514665 TMEM159Q96B96 161 aa12.78□□□□□ -0.36
USP53-209ENST00000514665 ASB2Q96Q27 587 aa12.78□□□□□ -0.36
USP53-209ENST00000514665 EMILIN2Q9BXX0 1053 aa12.78□□□□□ -0.36
USP53-209ENST00000514665 TMEM245Q9H330 911 aa12.78□□□□□ -0.36
USP53-209ENST00000514665 MIEF1Q9NQG6 463 aa12.78□□□□□ -0.36
USP53-209ENST00000514665 TAS2R1Q9NYW7 299 aa12.78□□□□□ -0.36
USP53-209ENST00000514665 TMEM216Q9P0N5 145 aa12.78□□□□□ -0.36
USP53-209ENST00000514665 HMGXB4Q9UGU5 601 aa12.78□□□□□ -0.36
USP53-209ENST00000514665 TMEM59LQ9UK28 342 aa12.78□□□□□ -0.36
USP53-209ENST00000514665 AP4B1Q9Y6B7 739 aa12.78□□□□□ -0.36
USP53-209ENST00000514665 AK5Q9Y6K8 562 aa12.78□□□□□ -0.36
USP53-209ENST00000514665 CLUHO75153 1309 aa12.78□□□□□ -0.36
USP53-209ENST00000514665 BCLAF3A2AJT9 711 aaKnown RBP12.78□□□□□ -0.36
USP53-209ENST00000514665 DHX15O43143 795 aaKnown RBP12.78□□□□□ -0.36
USP53-209ENST00000514665 SIN3BO75182 1162 aa12.78□□□□□ -0.36
USP53-209ENST00000514665 RASSF9O75901 435 aa12.78□□□□□ -0.36
USP53-209ENST00000514665 OR4Q2P0C623 313 aa12.78□□□□□ -0.36
USP53-209ENST00000514665 LINC00032P0C843 101 aa12.78□□□□□ -0.36
USP53-209ENST00000514665 MRPS6P82932 125 aaKnown RBP12.78□□□□□ -0.36
USP53-209ENST00000514665 FOLH1Q04609 750 aa12.78□□□□□ -0.36
USP53-209ENST00000514665 CNTN1Q12860 1018 aa12.78□□□□□ -0.36
USP53-209ENST00000514665 CRY1Q16526 586 aa12.78□□□□□ -0.36
USP53-209ENST00000514665 FAM228AQ86W67 206 aa12.78□□□□□ -0.36
USP53-209ENST00000514665 MCOLN3Q8TDD5 553 aa12.78□□□□□ -0.36
USP53-209ENST00000514665 SELENOMQ8WWX9 145 aa12.78□□□□□ -0.36
USP53-209ENST00000514665 ERLEC1Q96DZ1 483 aa12.78□□□□□ -0.36
USP53-209ENST00000514665 LPIN3Q9BQK8 851 aa12.78□□□□□ -0.36
USP53-209ENST00000514665 SNX8Q9Y5X2 465 aa12.78□□□□□ -0.36
USP53-209ENST00000514665 GON4LQ3T8J9 2241 aa12.78□□□□□ -0.36
USP53-209ENST00000514665 UGT1A9O60656 530 aa12.78□□□□□ -0.36
USP53-209ENST00000514665 PLIN3O60664 434 aa12.78□□□□□ -0.36
USP53-209ENST00000514665 TM7SF2O76062 418 aa12.78□□□□□ -0.36
USP53-209ENST00000514665 TPSB2P20231 275 aa12.78□□□□□ -0.36
USP53-209ENST00000514665 IL1R2P27930 398 aa12.78□□□□□ -0.36
USP53-209ENST00000514665 NDUFV1P49821 464 aa12.78□□□□□ -0.36
USP53-209ENST00000514665 TPSAB1Q15661 275 aa12.78□□□□□ -0.36
USP53-209ENST00000514665 TIGD2Q4W5G0 525 aa12.78□□□□□ -0.36
USP53-209ENST00000514665 FBXO48Q5FWF7 155 aa12.78□□□□□ -0.36
USP53-209ENST00000514665 RINLQ6ZS11 566 aa12.78□□□□□ -0.36
USP53-209ENST00000514665 TRMT11Q7Z4G4 463 aaKnown RBP12.78□□□□□ -0.36
USP53-209ENST00000514665 TRIM69Q86WT6 500 aa12.78□□□□□ -0.36
USP53-209ENST00000514665 PQLC1Q8N2U9 271 aa12.78□□□□□ -0.36
USP53-209ENST00000514665 ZNF614Q8N883 585 aa12.78□□□□□ -0.36
USP53-209ENST00000514665 RORBQ92753 470 aa12.78□□□□□ -0.36
USP53-209ENST00000514665 NXNL1Q96CM4 212 aa12.78□□□□□ -0.36
USP53-209ENST00000514665 MAGED4Q96JG8 741 aa12.78□□□□□ -0.36
USP53-209ENST00000514665 CADM1Q9BY67 442 aaKnown RBP12.78□□□□□ -0.36
USP53-209ENST00000514665 UGT1A7Q9HAW7 530 aa12.78□□□□□ -0.36
USP53-209ENST00000514665 UGT1A10Q9HAW8 530 aa12.78□□□□□ -0.36
USP53-209ENST00000514665 UGT1A8Q9HAW9 530 aa12.78□□□□□ -0.36
USP53-209ENST00000514665 DYRK1BQ9Y463 629 aa12.78□□□□□ -0.36
USP53-209ENST00000514665 SNX10Q9Y5X0 201 aa12.78□□□□□ -0.36
USP53-209ENST00000514665 PTCH2Q9Y6C5 1203 aa12.78□□□□□ -0.36
USP53-209ENST00000514665 MGRN1O60291 552 aa12.77□□□□□ -0.36
USP53-209ENST00000514665 CNOT3O75175 753 aaKnown RBP12.77□□□□□ -0.36
USP53-209ENST00000514665 FBXW4P57775 412 aa12.77□□□□□ -0.36
USP53-209ENST00000514665 CNTNAP1P78357 1384 aa12.77□□□□□ -0.36
USP53-209ENST00000514665 SQLEQ14534 574 aa12.77□□□□□ -0.36
USP53-209ENST00000514665 GRM3Q14832 879 aa12.77□□□□□ -0.36
USP53-209ENST00000514665 DLG2Q15700 870 aa12.77□□□□□ -0.36
USP53-209ENST00000514665 SPESP1Q6UW49 350 aa12.77□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms