RNA–Protein interactions for RNA: ENST00000513818.1

TOPBP1-209, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 1 (best)

Gene TOPBP1, Length 898 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-209ENST00000513818 HEPHQ9BQS7 1158 aa9.93□□□□□ -0.82
TOPBP1-209ENST00000513818 PABPC3Q9H361 631 aaKnown RBP9.93□□□□□ -0.82
TOPBP1-209ENST00000513818 NOD2Q9HC29 1040 aa9.93□□□□□ -0.82
TOPBP1-209ENST00000513818 KCND1Q9NSA2 647 aa9.93□□□□□ -0.82
TOPBP1-209ENST00000513818 IGSF5Q9NSI5 407 aa9.93□□□□□ -0.82
TOPBP1-209ENST00000513818 MBD1Q9UIS9 605 aaPredicted RBP9.93□□□□□ -0.82
TOPBP1-209ENST00000513818 DNPEPQ9ULA0 475 aa9.93□□□□□ -0.82
TOPBP1-209ENST00000513818 PPM1HQ9ULR3 514 aa9.93□□□□□ -0.82
TOPBP1-209ENST00000513818 ITM2BQ9Y287 266 aa9.93□□□□□ -0.82
TOPBP1-209ENST00000513818 EFR3BQ9Y2G0 817 aa9.93□□□□□ -0.82
TOPBP1-209ENST00000513818 DMDP11532 3685 aa9.93□□□□□ -0.82
TOPBP1-209ENST00000513818 NUMA1Q14980 2115 aa9.92□□□□□ -0.82
TOPBP1-209ENST00000513818 FRYLO94915 3013 aa9.92□□□□□ -0.82
TOPBP1-209ENST00000513818 PLXND1Q9Y4D7 1925 aa9.92□□□□□ -0.82
TOPBP1-209ENST00000513818 MUC6Q6W4X9 2439 aa9.92□□□□□ -0.82
TOPBP1-209ENST00000513818 IGHV1OR15-9A0A0B4J2B8 117 aa9.92□□□□□ -0.82
TOPBP1-209ENST00000513818 FAM47DPA6NHR8 397 aa9.92□□□□□ -0.82
TOPBP1-209ENST00000513818 C1QTNF3-AMACRE9PGA6 284 aa9.92□□□□□ -0.82
TOPBP1-209ENST00000513818 KCNN4O15554 427 aa9.92□□□□□ -0.82
TOPBP1-209ENST00000513818 ZBTB24O43167 697 aaPredicted RBP9.92□□□□□ -0.82
TOPBP1-209ENST00000513818 HRO43593 1189 aa9.92□□□□□ -0.82
TOPBP1-209ENST00000513818 RNASEH1O60930 286 aaKnown RBP9.92□□□□□ -0.82
TOPBP1-209ENST00000513818 ITIH2P19823 946 aa9.92□□□□□ -0.82
TOPBP1-209ENST00000513818 CR2P20023 1033 aa9.92□□□□□ -0.82
TOPBP1-209ENST00000513818 DRD3P35462 400 aa9.92□□□□□ -0.82
TOPBP1-209ENST00000513818 ABL2P42684 1182 aa9.92□□□□□ -0.82
TOPBP1-209ENST00000513818 GDF10P55107 478 aa9.92□□□□□ -0.82
TOPBP1-209ENST00000513818 NIPAL4Q0D2K0 466 aa9.92□□□□□ -0.82
TOPBP1-209ENST00000513818 WASHC5Q12768 1159 aa9.92□□□□□ -0.82
TOPBP1-209ENST00000513818 TRAF2Q12933 501 aa9.92□□□□□ -0.82
TOPBP1-209ENST00000513818 HNRNPDQ14103 355 aaKnown RBP9.92□□□□□ -0.82
TOPBP1-209ENST00000513818 MAP7D1Q3KQU3 841 aa9.92□□□□□ -0.82
TOPBP1-209ENST00000513818 TTC31Q49AM3 519 aaPredicted RBP9.92□□□□□ -0.82
TOPBP1-209ENST00000513818 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP9.92□□□□□ -0.82
TOPBP1-209ENST00000513818 DSG4Q86SJ6 1040 aa9.92□□□□□ -0.82
TOPBP1-209ENST00000513818 PRUNE1Q86TP1 453 aa9.92□□□□□ -0.82
TOPBP1-209ENST00000513818 CAMK1DQ8IU85 385 aa9.92□□□□□ -0.82
TOPBP1-209ENST00000513818 CDKL3Q8IVW4 592 aaPredicted RBP9.92□□□□□ -0.82
TOPBP1-209ENST00000513818 ZNF567Q8N184 647 aa9.92□□□□□ -0.82
TOPBP1-209ENST00000513818 TAB3Q8N5C8 712 aaPredicted RBP9.92□□□□□ -0.82
TOPBP1-209ENST00000513818 SLC35B2Q8TB61 432 aa9.92□□□□□ -0.82
TOPBP1-209ENST00000513818 HTR3CQ8WXA8 447 aa9.92□□□□□ -0.82
TOPBP1-209ENST00000513818 NELL1Q92832 810 aa9.92□□□□□ -0.82
TOPBP1-209ENST00000513818 SMIM14Q96QK8 99 aa9.92□□□□□ -0.82
TOPBP1-209ENST00000513818 IL12RB2Q99665 862 aa9.92□□□□□ -0.82
TOPBP1-209ENST00000513818 TMUB1Q9BVT8 246 aa9.92□□□□□ -0.82
TOPBP1-209ENST00000513818 AP1M1Q9BXS5 423 aa9.92□□□□□ -0.82
TOPBP1-209ENST00000513818 BRD8Q9H0E9 1235 aa9.92□□□□□ -0.82
TOPBP1-209ENST00000513818 FBRSQ9HAH7 460 aa9.92□□□□□ -0.82
TOPBP1-209ENST00000513818 ZSCAN32Q9NX65 697 aa9.92□□□□□ -0.82
TOPBP1-209ENST00000513818 FBXL12Q9NXK8 326 aa9.92□□□□□ -0.82
TOPBP1-209ENST00000513818 USP36Q9P275 1121 aaKnown RBP9.92□□□□□ -0.82
TOPBP1-209ENST00000513818 KLHL8Q9P2G9 620 aaPredicted RBP9.92□□□□□ -0.82
TOPBP1-209ENST00000513818 FANCMQ8IYD8 2048 aa9.92□□□□□ -0.82
TOPBP1-209ENST00000513818 ATXN2Q99700 1313 aaKnown RBP9.91□□□□□ -0.82
TOPBP1-209ENST00000513818 CXorf51AA0A1B0GTR3 108 aa9.91□□□□□ -0.82
TOPBP1-209ENST00000513818 CTAGE9A4FU28 777 aa9.91□□□□□ -0.82
TOPBP1-209ENST00000513818 HACD1B0YJ81 288 aa9.91□□□□□ -0.82
TOPBP1-209ENST00000513818 ALOX15BO15296 676 aa9.91□□□□□ -0.82
TOPBP1-209ENST00000513818 LIASO43766 372 aa9.91□□□□□ -0.82
TOPBP1-209ENST00000513818 RPP40O75818 363 aaKnown RBP9.91□□□□□ -0.82
TOPBP1-209ENST00000513818 ADH1BP00325 375 aa9.91□□□□□ -0.82
TOPBP1-209ENST00000513818 PRNPP04156 253 aa9.91□□□□□ -0.82
TOPBP1-209ENST00000513818 ETS1P14921 441 aa9.91□□□□□ -0.82
TOPBP1-209ENST00000513818 NFKB1P19838 968 aa9.91□□□□□ -0.82
TOPBP1-209ENST00000513818 C5AR1P21730 350 aa9.91□□□□□ -0.82
TOPBP1-209ENST00000513818 ACSL1P33121 698 aa9.91□□□□□ -0.82
TOPBP1-209ENST00000513818 CD68P34810 354 aaPredicted RBP9.91□□□□□ -0.82
TOPBP1-209ENST00000513818 P2RY2P41231 377 aa9.91□□□□□ -0.82
TOPBP1-209ENST00000513818 CD86P42081 329 aa9.91□□□□□ -0.82
TOPBP1-209ENST00000513818 RENBPP51606 427 aa9.91□□□□□ -0.82
TOPBP1-209ENST00000513818 ETF1P62495 437 aaKnown RBP9.91□□□□□ -0.82
TOPBP1-209ENST00000513818 PTPRRQ15256 657 aa9.91□□□□□ -0.82
TOPBP1-209ENST00000513818 ZNF528Q3MIS6 628 aa9.91□□□□□ -0.82
TOPBP1-209ENST00000513818 FAXCQ5TGI0 409 aa9.91□□□□□ -0.82
TOPBP1-209ENST00000513818 AGBL4Q5VU57 503 aa9.91□□□□□ -0.82
TOPBP1-209ENST00000513818 NCEH1Q6PIU2 408 aa9.91□□□□□ -0.82
TOPBP1-209ENST00000513818 GDPD4Q6W3E5 623 aa9.91□□□□□ -0.82
TOPBP1-209ENST00000513818 PRR23BQ6ZRT6 265 aa9.91□□□□□ -0.82
TOPBP1-209ENST00000513818 NYAP1Q6ZVC0 841 aa9.91□□□□□ -0.82
TOPBP1-209ENST00000513818 BZW1Q7L1Q6 419 aaKnown RBP9.91□□□□□ -0.82
TOPBP1-209ENST00000513818 METTL3Q86U44 580 aaKnown RBP9.91□□□□□ -0.82
TOPBP1-209ENST00000513818 KBTBD6Q86V97 674 aa9.91□□□□□ -0.82
TOPBP1-209ENST00000513818 LRRC49Q8IUZ0 686 aa9.91□□□□□ -0.82
TOPBP1-209ENST00000513818 BBS5Q8N3I7 341 aa9.91□□□□□ -0.82
TOPBP1-209ENST00000513818 RASGEF1CQ8N431 466 aa9.91□□□□□ -0.82
TOPBP1-209ENST00000513818 PAF1Q8N7H5 531 aa9.91□□□□□ -0.82
TOPBP1-209ENST00000513818 FAM71DQ8N9W8 422 aa9.91□□□□□ -0.82
TOPBP1-209ENST00000513818 SPATA22Q8NHS9 363 aa9.91□□□□□ -0.82
TOPBP1-209ENST00000513818 ARRDC2Q8TBH0 407 aa9.91□□□□□ -0.82
TOPBP1-209ENST00000513818 CCDC110Q8TBZ0 833 aa9.91□□□□□ -0.82
TOPBP1-209ENST00000513818 PDCD6IPQ8WUM4 868 aaKnown RBP9.91□□□□□ -0.82
TOPBP1-209ENST00000513818 ATOH1Q92858 354 aaPredicted RBP9.91□□□□□ -0.82
TOPBP1-209ENST00000513818 TOE1Q96GM8 510 aaKnown RBP9.91□□□□□ -0.82
TOPBP1-209ENST00000513818 PBKQ96KB5 322 aa9.91□□□□□ -0.82
TOPBP1-209ENST00000513818 SPACA7Q96KW9 195 aa9.91□□□□□ -0.82
TOPBP1-209ENST00000513818 NUDCD1Q96RS6 583 aa9.91□□□□□ -0.82
TOPBP1-209ENST00000513818 RBM15Q96T37 977 aaKnown RBP eCLIP9.91□□□□□ -0.82
TOPBP1-209ENST00000513818 PHOX2BQ99453 314 aa9.91□□□□□ -0.82
TOPBP1-209ENST00000513818 OMDQ99983 421 aa9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms