RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 NCAM2O15394 837 aa9.36□□□□□ -0.91
LIMCH1-215ENST00000512632 SNAI1O95863 264 aaPredicted RBP9.36□□□□□ -0.91
LIMCH1-215ENST00000512632 PSMC3P17980 439 aa9.36□□□□□ -0.91
LIMCH1-215ENST00000512632 GALNT2Q10471 571 aa9.36□□□□□ -0.91
LIMCH1-215ENST00000512632 PRAMEF19Q5SWL8 479 aa9.36□□□□□ -0.91
LIMCH1-215ENST00000512632 MRPL46Q9H2W6 279 aaKnown RBP9.36□□□□□ -0.91
LIMCH1-215ENST00000512632 IL1RL2Q9HB29 575 aa9.36□□□□□ -0.91
LIMCH1-215ENST00000512632 PTTG2Q9NZH5 202 aa9.36□□□□□ -0.91
LIMCH1-215ENST00000512632 EPS15L1Q9UBC2 864 aa9.36□□□□□ -0.91
LIMCH1-215ENST00000512632 CENPFP49454 3210 aa9.36□□□□□ -0.91
LIMCH1-215ENST00000512632 DNAH12Q6ZR08 3092 aa9.36□□□□□ -0.91
LIMCH1-215ENST00000512632 NRCAMQ92823 1304 aa9.36□□□□□ -0.91
LIMCH1-215ENST00000512632 SLCO1B7G3V0H7 640 aa9.35□□□□□ -0.91
LIMCH1-215ENST00000512632 TRIM38O00635 465 aa9.35□□□□□ -0.91
LIMCH1-215ENST00000512632 ZNF26P17031 533 aaPredicted RBP9.35□□□□□ -0.91
LIMCH1-215ENST00000512632 PRAMEP78395 509 aa9.35□□□□□ -0.91
LIMCH1-215ENST00000512632 TWF2Q6IBS0 349 aaKnown RBP9.35□□□□□ -0.91
LIMCH1-215ENST00000512632 DPP9Q86TI2 863 aa9.35□□□□□ -0.91
LIMCH1-215ENST00000512632 AHI1Q8N157 1196 aa9.35□□□□□ -0.91
LIMCH1-215ENST00000512632 CATSPER1Q8NEC5 780 aa9.35□□□□□ -0.91
LIMCH1-215ENST00000512632 FAM81AQ8TBF8 368 aa9.35□□□□□ -0.91
LIMCH1-215ENST00000512632 RDH11Q8TC12 318 aa9.35□□□□□ -0.91
LIMCH1-215ENST00000512632 CCT7Q99832 543 aa9.35□□□□□ -0.91
LIMCH1-215ENST00000512632 MCMBPQ9BTE3 642 aa9.35□□□□□ -0.91
LIMCH1-215ENST00000512632 KIFC1Q9BW19 673 aa9.35□□□□□ -0.91
LIMCH1-215ENST00000512632 SENP6Q9GZR1 1112 aaPredicted RBP9.35□□□□□ -0.91
LIMCH1-215ENST00000512632 FBRSL1Q9HCM7 1045 aaKnown RBP9.35□□□□□ -0.91
LIMCH1-215ENST00000512632 NUDT5Q9UKK9 219 aa9.35□□□□□ -0.91
LIMCH1-215ENST00000512632 ANKRD6Q9Y2G4 727 aa9.35□□□□□ -0.91
LIMCH1-215ENST00000512632 PRORSD1PA6NEY8 169 aa9.35□□□□□ -0.91
LIMCH1-215ENST00000512632 C9JVG2 144 aa9.35□□□□□ -0.91
LIMCH1-215ENST00000512632 CCL22O00626 93 aa9.35□□□□□ -0.91
LIMCH1-215ENST00000512632 XPOTO43592 962 aaKnown RBP9.35□□□□□ -0.91
LIMCH1-215ENST00000512632 MMP3P08254 477 aa9.35□□□□□ -0.91
LIMCH1-215ENST00000512632 PNPLA4P41247 253 aa9.35□□□□□ -0.91
LIMCH1-215ENST00000512632 SLC1A2P43004 574 aa9.35□□□□□ -0.91
LIMCH1-215ENST00000512632 C1QTNF8P60827 252 aa9.35□□□□□ -0.91
LIMCH1-215ENST00000512632 PCID2Q5JVF3 399 aa9.35□□□□□ -0.91
LIMCH1-215ENST00000512632 BNIPLQ7Z465 357 aa9.35□□□□□ -0.91
LIMCH1-215ENST00000512632 LDB1Q86U70 411 aaPredicted RBP9.35□□□□□ -0.91
LIMCH1-215ENST00000512632 PCED1BQ96HM7 432 aa9.35□□□□□ -0.91
LIMCH1-215ENST00000512632 SENP8Q96LD8 212 aa9.35□□□□□ -0.91
LIMCH1-215ENST00000512632 SLC9A7Q96T83 725 aa9.35□□□□□ -0.91
LIMCH1-215ENST00000512632 DNAI2Q9GZS0 605 aa9.35□□□□□ -0.91
LIMCH1-215ENST00000512632 OSBPL2Q9H1P3 480 aa9.35□□□□□ -0.91
LIMCH1-215ENST00000512632 HSFX1Q9UBD0 423 aa9.35□□□□□ -0.91
LIMCH1-215ENST00000512632 FBXO5Q9UKT4 447 aa9.35□□□□□ -0.91
LIMCH1-215ENST00000512632 RNF11Q9Y3C5 154 aa9.35□□□□□ -0.91
LIMCH1-215ENST00000512632 PCDHGA7Q9Y5G6 932 aa9.35□□□□□ -0.91
LIMCH1-215ENST00000512632 ARHGEF37A1IGU5 675 aa9.35□□□□□ -0.91
LIMCH1-215ENST00000512632 MTSS1O43312 755 aa9.35□□□□□ -0.91
LIMCH1-215ENST00000512632 CDH15P55291 814 aa9.35□□□□□ -0.91
LIMCH1-215ENST00000512632 RPL26P61254 145 aaKnown RBP9.35□□□□□ -0.91
LIMCH1-215ENST00000512632 COG7P83436 770 aa9.35□□□□□ -0.91
LIMCH1-215ENST00000512632 TRIM25Q14258 630 aaKnown RBP9.35□□□□□ -0.91
LIMCH1-215ENST00000512632 FASTKQ14296 549 aaKnown RBP9.35□□□□□ -0.91
LIMCH1-215ENST00000512632 PABPC1LQ4VXU2 614 aaKnown RBP9.35□□□□□ -0.91
LIMCH1-215ENST00000512632 PAN2Q504Q3 1202 aaKnown RBP9.35□□□□□ -0.91
LIMCH1-215ENST00000512632 DRAXINQ8NBI3 349 aaPredicted RBP9.35□□□□□ -0.91
LIMCH1-215ENST00000512632 LENG1Q96BZ8 264 aaPredicted RBP9.35□□□□□ -0.91
LIMCH1-215ENST00000512632 ZNF419Q96HQ0 510 aaPredicted RBP9.35□□□□□ -0.91
LIMCH1-215ENST00000512632 MRPS26Q9BYN8 205 aaKnown RBP9.35□□□□□ -0.91
LIMCH1-215ENST00000512632 NOL11Q9H8H0 719 aaKnown RBP9.35□□□□□ -0.91
LIMCH1-215ENST00000512632 GALNT8Q9NY28 637 aa9.35□□□□□ -0.91
LIMCH1-215ENST00000512632 COL1A2P08123 1366 aa9.35□□□□□ -0.91
LIMCH1-215ENST00000512632 TADA2AO75478 443 aa9.35□□□□□ -0.91
LIMCH1-215ENST00000512632 YWHAQP27348 245 aa9.35□□□□□ -0.91
LIMCH1-215ENST00000512632 ARNTP27540 789 aa9.35□□□□□ -0.91
LIMCH1-215ENST00000512632 SOX11P35716 441 aa9.35□□□□□ -0.91
LIMCH1-215ENST00000512632 SULT2A1Q06520 285 aa9.35□□□□□ -0.91
LIMCH1-215ENST00000512632 MTX3Q5HYI7 312 aa9.35□□□□□ -0.91
LIMCH1-215ENST00000512632 CLEC6AQ6EIG7 209 aa9.35□□□□□ -0.91
LIMCH1-215ENST00000512632 HMGCLL1Q8TB92 370 aa9.35□□□□□ -0.91
LIMCH1-215ENST00000512632 FAM110BQ8TC76 370 aa9.35□□□□□ -0.91
LIMCH1-215ENST00000512632 DLG3Q92796 817 aa9.35□□□□□ -0.91
LIMCH1-215ENST00000512632 NTAN1Q96AB6 310 aa9.35□□□□□ -0.91
LIMCH1-215ENST00000512632 EPB41L1Q9H4G0 881 aa9.35□□□□□ -0.91
LIMCH1-215ENST00000512632 VTA1Q9NP79 307 aa9.35□□□□□ -0.91
LIMCH1-215ENST00000512632 MTF2Q9Y483 593 aaPredicted RBP9.35□□□□□ -0.91
LIMCH1-215ENST00000512632 IPPQ9Y573 584 aa9.35□□□□□ -0.91
LIMCH1-215ENST00000512632 ZNF638Q14966 1978 aaKnown RBP9.34□□□□□ -0.91
LIMCH1-215ENST00000512632 PSMD12O00232 456 aaPredicted RBP9.34□□□□□ -0.91
LIMCH1-215ENST00000512632 UBDO15205 165 aa9.34□□□□□ -0.91
LIMCH1-215ENST00000512632 TPST1O60507 370 aa9.34□□□□□ -0.91
LIMCH1-215ENST00000512632 SLC5A2P31639 672 aa9.34□□□□□ -0.91
LIMCH1-215ENST00000512632 CDH13P55290 713 aa9.34□□□□□ -0.91
LIMCH1-215ENST00000512632 UGP2Q16851 508 aa9.34□□□□□ -0.91
LIMCH1-215ENST00000512632 ZNF792Q3KQV3 632 aa9.34□□□□□ -0.91
LIMCH1-215ENST00000512632 KRT80Q6KB66 452 aa9.34□□□□□ -0.91
LIMCH1-215ENST00000512632 FAM35AQ86V20 835 aa9.34□□□□□ -0.91
LIMCH1-215ENST00000512632 HERC6Q8IVU3 1022 aa9.34□□□□□ -0.91
LIMCH1-215ENST00000512632 GPC2Q8N158 579 aa9.34□□□□□ -0.91
LIMCH1-215ENST00000512632 SPPL2BQ8TCT7 592 aa9.34□□□□□ -0.91
LIMCH1-215ENST00000512632 KCTD13Q8WZ19 329 aa9.34□□□□□ -0.91
LIMCH1-215ENST00000512632 EXT2Q93063 718 aa9.34□□□□□ -0.91
LIMCH1-215ENST00000512632 CDCA5Q96FF9 252 aa9.34□□□□□ -0.91
LIMCH1-215ENST00000512632 TBL1YQ9BQ87 522 aa9.34□□□□□ -0.91
LIMCH1-215ENST00000512632 TMEM79Q9BSE2 394 aa9.34□□□□□ -0.91
LIMCH1-215ENST00000512632 VPS28Q9UK41 221 aa9.34□□□□□ -0.91
LIMCH1-215ENST00000512632 PLOD2O00469 737 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms