RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 PPP2R1BP30154 601 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 HOXD12P35452 270 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 UGT2B10P36537 528 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 POLD2P49005 469 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 GALK1P51570 392 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 ARF3P61204 181 aaPredicted RBP3.61□□□□□ -1.83
USP53-205ENST00000509769 ARF1P84077 181 aaKnown RBP3.61□□□□□ -1.83
USP53-205ENST00000509769 DEFA5Q01523 94 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 CBLBQ13191 982 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 DMP1Q13316 513 aaPredicted RBP3.61□□□□□ -1.83
USP53-205ENST00000509769 E2F2Q14209 437 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 PIGHQ14442 188 aaPredicted RBP3.61□□□□□ -1.83
USP53-205ENST00000509769 PSMD5Q16401 504 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 SLC18A3Q16572 532 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 DGKDQ16760 1214 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 TRAPPC3LQ5T215 181 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 GPATCH4Q5T3I0 446 aaKnown RBP3.61□□□□□ -1.83
USP53-205ENST00000509769 HEATR6Q6AI08 1181 aaKnown RBP3.61□□□□□ -1.83
USP53-205ENST00000509769 GPR139Q6DWJ6 353 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 TMPRSS11AQ6ZMR5 421 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 GADL1Q6ZQY3 521 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 QSOX2Q6ZRP7 698 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 FAM220AQ7Z4H9 259 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 HID1Q8IV36 788 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 MMAAQ8IVH4 418 aaKnown RBP3.61□□□□□ -1.83
USP53-205ENST00000509769 SCN4BQ8IWT1 228 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 DDIASQ8IXT1 998 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 METTL13Q8N6R0 699 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 DHRS1Q96LJ7 313 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 EBNA1BP2Q99848 306 aaKnown RBP3.61□□□□□ -1.83
USP53-205ENST00000509769 DDX50Q9BQ39 737 aaKnown RBP3.61□□□□□ -1.83
USP53-205ENST00000509769 DCUN1D5Q9BTE7 237 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 ADI1Q9BV57 179 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 TDRD1Q9BXT4 1180 aaKnown RBP3.61□□□□□ -1.83
USP53-205ENST00000509769 CST11Q9H112 138 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 MMP27Q9H306 513 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 DPAGT1Q9H3H5 408 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 ANKRA2Q9H9E1 313 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 NCKIPSDQ9NZQ3 722 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 CABP1Q9NZU7 370 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 TLL2Q9Y6L7 1015 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 UTYO14607 1347 aa3.61□□□□□ -1.83
USP53-205ENST00000509769 C20orf202A1L168 122 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 OR6C65A6NJZ3 312 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 NPIPA7E9PJI5 369 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 ZBTB22O15209 634 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 CCNT1O60563 726 aaKnown RBP3.6□□□□□ -1.83
USP53-205ENST00000509769 PDE8AO60658 829 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 PPM1BO75688 479 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 SULT1C4O75897 302 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 SCAF4O95104 1147 aaKnown RBP3.6□□□□□ -1.83
USP53-205ENST00000509769 FTCDO95954 541 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 RPLP0P05388 317 aaKnown RBP3.6□□□□□ -1.83
USP53-205ENST00000509769 GNAO1P09471 354 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 NPIPA8P0DM63 369 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 TNNI1P19237 187 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 KCNA5P22460 613 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 PSMA1P25786 263 aaKnown RBP3.6□□□□□ -1.83
USP53-205ENST00000509769 YWHAQP27348 245 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 DLSTP36957 453 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 NR4A2P43354 598 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 MAGEA12P43365 314 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 VEGFCP49767 419 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 YARSP54577 528 aaKnown RBP3.6□□□□□ -1.83
USP53-205ENST00000509769 OXCT1P55809 520 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 PSMA6P60900 246 aaKnown RBP3.6□□□□□ -1.83
USP53-205ENST00000509769 KCNJ2P63252 427 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 MGAT5Q09328 741 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 SMARCB1Q12824 385 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 PICALMQ13492 652 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 NR6A1Q15406 480 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 NAB2Q15742 525 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 HIST2H2ACQ16777 129 aaPredicted RBP3.6□□□□□ -1.83
USP53-205ENST00000509769 Q3ZCU0 254 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 C4orf46Q504U0 113 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 EAPPQ56P03 285 aaPredicted RBP3.6□□□□□ -1.83
USP53-205ENST00000509769 HIST2H2AA3Q6FI13 130 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 DRICH1Q6PGQ1 229 aaPredicted RBP3.6□□□□□ -1.83
USP53-205ENST00000509769 ULK3Q6PHR2 472 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 FAM131AQ6UXB0 335 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 NAPRTQ6XQN6 538 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 KDELC2Q7Z4H8 507 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 ZNF598Q86UK7 904 aaKnown RBP3.6□□□□□ -1.83
USP53-205ENST00000509769 DGKHQ86XP1 1220 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 TICAM1Q8IUC6 712 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 PDZD9Q8IXQ8 264 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 THNSL1Q8IYQ7 743 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 PLD5Q8N7P1 536 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 FAM71DQ8N9W8 422 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 PAPD5Q8NDF8 572 aaKnown RBP3.6□□□□□ -1.83
USP53-205ENST00000509769 ANGPTL6Q8NI99 470 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 DNAJB14Q8TBM8 379 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 SNX33Q8WV41 574 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 RBM17Q96I25 401 aaKnown RBP3.6□□□□□ -1.83
USP53-205ENST00000509769 RBM15Q96T37 977 aaKnown RBP eCLIP3.6□□□□□ -1.83
USP53-205ENST00000509769 ARPC5LQ9BPX5 153 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 RTKNQ9BST9 563 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 HGH1Q9BTY7 390 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 NPLQ9BXD5 320 aaPredicted RBP3.6□□□□□ -1.83
USP53-205ENST00000509769 TMEM120AQ9BXJ8 343 aa3.6□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms