RNA–Protein interactions for RNA: ENST00000504761.6

TCOF1-207, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 4,467 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-207ENST00000504761 PDK4Q16654 411 aa14.23□□□□□ -0.13
TCOF1-207ENST00000504761 MARK2Q7KZI7 788 aaKnown RBP14.23□□□□□ -0.13
TCOF1-207ENST00000504761 GPRIN1Q7Z2K8 1008 aa14.23□□□□□ -0.13
TCOF1-207ENST00000504761 OR10T2Q8NGX3 314 aa14.23□□□□□ -0.13
TCOF1-207ENST00000504761 OXNAD1Q96HP4 312 aaPredicted RBP14.23□□□□□ -0.13
TCOF1-207ENST00000504761 GBA3Q9H227 469 aa14.23□□□□□ -0.13
TCOF1-207ENST00000504761 SEMA4BQ9NPR2 832 aaPredicted RBP14.23□□□□□ -0.13
TCOF1-207ENST00000504761 MEI4A8MW99 385 aa14.23□□□□□ -0.13
TCOF1-207ENST00000504761 UGT1A9O60656 530 aa14.23□□□□□ -0.13
TCOF1-207ENST00000504761 DRD4P21917 467 aa14.23□□□□□ -0.13
TCOF1-207ENST00000504761 CDC25CP30307 473 aa14.23□□□□□ -0.13
TCOF1-207ENST00000504761 HALP42357 657 aa14.23□□□□□ -0.13
TCOF1-207ENST00000504761 ABCE1P61221 599 aaKnown RBP14.23□□□□□ -0.13
TCOF1-207ENST00000504761 SATB1Q01826 763 aa14.23□□□□□ -0.13
TCOF1-207ENST00000504761 PKN3Q6P5Z2 889 aa14.23□□□□□ -0.13
TCOF1-207ENST00000504761 FAM151BQ6UXP7 276 aa14.23□□□□□ -0.13
TCOF1-207ENST00000504761 SUSD6Q92537 303 aa14.23□□□□□ -0.13
TCOF1-207ENST00000504761 SMG7Q92540 1137 aaKnown RBP14.23□□□□□ -0.13
TCOF1-207ENST00000504761 CENPKQ9BS16 269 aa14.23□□□□□ -0.13
TCOF1-207ENST00000504761 ATP13A3Q9H7F0 1226 aa14.23□□□□□ -0.13
TCOF1-207ENST00000504761 SLC28A3Q9HAS3 691 aa14.23□□□□□ -0.13
TCOF1-207ENST00000504761 UGT1A7Q9HAW7 530 aa14.23□□□□□ -0.13
TCOF1-207ENST00000504761 UGT1A10Q9HAW8 530 aa14.23□□□□□ -0.13
TCOF1-207ENST00000504761 UGT1A8Q9HAW9 530 aa14.23□□□□□ -0.13
TCOF1-207ENST00000504761 ORC6Q9Y5N6 252 aa14.23□□□□□ -0.13
TCOF1-207ENST00000504761 F8W810 466 aa14.23□□□□□ -0.13
TCOF1-207ENST00000504761 IL1BP01584 269 aa14.23□□□□□ -0.13
TCOF1-207ENST00000504761 CCNCP24863 283 aa14.23□□□□□ -0.13
TCOF1-207ENST00000504761 CDH5P33151 784 aaPredicted RBP14.23□□□□□ -0.13
TCOF1-207ENST00000504761 CDH13P55290 713 aa14.23□□□□□ -0.13
TCOF1-207ENST00000504761 NR6A1Q15406 480 aa14.23□□□□□ -0.13
TCOF1-207ENST00000504761 TRIP10Q15642 601 aa14.23□□□□□ -0.13
TCOF1-207ENST00000504761 ANKS6Q68DC2 871 aa14.23□□□□□ -0.13
TCOF1-207ENST00000504761 FBXL22Q6P050 247 aa14.23□□□□□ -0.13
TCOF1-207ENST00000504761 ERAP2Q6P179 960 aa14.23□□□□□ -0.13
TCOF1-207ENST00000504761 KREMEN2Q8NCW0 462 aa14.23□□□□□ -0.13
TCOF1-207ENST00000504761 TEKT5Q96M29 485 aa14.23□□□□□ -0.13
TCOF1-207ENST00000504761 HERPUD2Q9BSE4 406 aa14.23□□□□□ -0.13
TCOF1-207ENST00000504761 MATN3O15232 486 aa14.22□□□□□ -0.13
TCOF1-207ENST00000504761 EFCAB14O75071 495 aa14.22□□□□□ -0.13
TCOF1-207ENST00000504761 HNRNPLP14866 589 aaKnown RBP eCLIP14.22□□□□□ -0.13
TCOF1-207ENST00000504761 LPOP22079 712 aaPredicted RBP14.22□□□□□ -0.13
TCOF1-207ENST00000504761 NMBRP28336 390 aa14.22□□□□□ -0.13
TCOF1-207ENST00000504761 OASLQ15646 514 aaKnown RBP14.22□□□□□ -0.13
TCOF1-207ENST00000504761 KIRREL3Q8IZU9 778 aa14.22□□□□□ -0.13
TCOF1-207ENST00000504761 RAB42Q8N4Z0 105 aa14.22□□□□□ -0.13
TCOF1-207ENST00000504761 KBTBD7Q8WVZ9 684 aa14.22□□□□□ -0.13
TCOF1-207ENST00000504761 KCTD13Q8WZ19 329 aa14.22□□□□□ -0.13
TCOF1-207ENST00000504761 PPP1R10Q96QC0 940 aaKnown RBP14.22□□□□□ -0.13
TCOF1-207ENST00000504761 NPY6RQ99463 290 aa14.22□□□□□ -0.13
TCOF1-207ENST00000504761 PIF1Q9H611 641 aa14.22□□□□□ -0.13
TCOF1-207ENST00000504761 MRPL40Q9NQ50 206 aaKnown RBP14.22□□□□□ -0.13
TCOF1-207ENST00000504761 SPASTQ9UBP0 616 aa14.22□□□□□ -0.13
TCOF1-207ENST00000504761 MYH9P35579 1960 aaKnown RBP14.22□□□□□ -0.13
TCOF1-207ENST00000504761 BAIAP3O94812 1187 aa14.22□□□□□ -0.13
TCOF1-207ENST00000504761 CSF2RAP15509 400 aa14.22□□□□□ -0.13
TCOF1-207ENST00000504761 POLR2LP62875 67 aaKnown RBP14.22□□□□□ -0.13
TCOF1-207ENST00000504761 MPP1Q00013 466 aa14.22□□□□□ -0.13
TCOF1-207ENST00000504761 USP45Q70EL2 814 aa14.22□□□□□ -0.13
TCOF1-207ENST00000504761 PIWIL2Q8TC59 973 aaKnown RBP14.22□□□□□ -0.13
TCOF1-207ENST00000504761 MARK4Q96L34 752 aa14.22□□□□□ -0.13
TCOF1-207ENST00000504761 AGAP2Q99490 1192 aa14.22□□□□□ -0.13
TCOF1-207ENST00000504761 CXCL16Q9H2A7 254 aa14.22□□□□□ -0.13
TCOF1-207ENST00000504761 ANLNQ9NQW6 1124 aa14.22□□□□□ -0.13
TCOF1-207ENST00000504761 SCOCQ9UIL1 159 aa14.22□□□□□ -0.13
TCOF1-207ENST00000504761 RABGEF1Q9UJ41 708 aa14.22□□□□□ -0.13
TCOF1-207ENST00000504761 SHANK3Q9BYB0 1731 aa14.22□□□□□ -0.13
TCOF1-207ENST00000504761 NR5A2O00482 541 aa14.22□□□□□ -0.13
TCOF1-207ENST00000504761 UBDO15205 165 aa14.22□□□□□ -0.13
TCOF1-207ENST00000504761 UGT2B4P06133 528 aa14.22□□□□□ -0.13
TCOF1-207ENST00000504761 YBEYP58557 167 aaPredicted RBP14.22□□□□□ -0.13
TCOF1-207ENST00000504761 IL2P60568 153 aa14.22□□□□□ -0.13
TCOF1-207ENST00000504761 C10orf107Q8IVU9 208 aa14.22□□□□□ -0.13
TCOF1-207ENST00000504761 TMEM159Q96B96 161 aa14.22□□□□□ -0.13
TCOF1-207ENST00000504761 MRPL46Q9H2W6 279 aaKnown RBP14.22□□□□□ -0.13
TCOF1-207ENST00000504761 KDM4CQ9H3R0 1056 aa14.22□□□□□ -0.13
TCOF1-207ENST00000504761 C11orf49Q9H6J7 331 aa14.22□□□□□ -0.13
TCOF1-207ENST00000504761 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP14.22□□□□□ -0.13
TCOF1-207ENST00000504761 MSRAQ9UJ68 235 aa14.22□□□□□ -0.13
TCOF1-207ENST00000504761 SLC13A4Q9UKG4 626 aa14.22□□□□□ -0.13
TCOF1-207ENST00000504761 FCF1Q9Y324 198 aaKnown RBP14.22□□□□□ -0.13
TCOF1-207ENST00000504761 RAD54BQ9Y620 910 aa14.22□□□□□ -0.13
TCOF1-207ENST00000504761 ATP6AP2A0A1C7CYW4 349 aa14.21□□□□□ -0.13
TCOF1-207ENST00000504761 ZNF623O75123 536 aa14.21□□□□□ -0.13
TCOF1-207ENST00000504761 ATP6AP2O75787 350 aa14.21□□□□□ -0.13
TCOF1-207ENST00000504761 RAB10P61026 200 aa14.21□□□□□ -0.13
TCOF1-207ENST00000504761 NAB1Q13506 487 aa14.21□□□□□ -0.13
TCOF1-207ENST00000504761 PARP15Q460N3 678 aa14.21□□□□□ -0.13
TCOF1-207ENST00000504761 UBXN11Q5T124 520 aa14.21□□□□□ -0.13
TCOF1-207ENST00000504761 C16orf89Q6UX73 402 aa14.21□□□□□ -0.13
TCOF1-207ENST00000504761 RNF19BQ6ZMZ0 732 aa14.21□□□□□ -0.13
TCOF1-207ENST00000504761 SLC22A9Q8IVM8 553 aa14.21□□□□□ -0.13
TCOF1-207ENST00000504761 PQLC3Q8N755 202 aa14.21□□□□□ -0.13
TCOF1-207ENST00000504761 METTL6Q8TCB7 284 aa14.21□□□□□ -0.13
TCOF1-207ENST00000504761 CENPTQ96BT3 561 aa14.21□□□□□ -0.13
TCOF1-207ENST00000504761 MED8Q96G25 268 aa14.21□□□□□ -0.13
TCOF1-207ENST00000504761 NOD2Q9HC29 1040 aa14.21□□□□□ -0.13
TCOF1-207ENST00000504761 VPS45Q9NRW7 570 aa14.21□□□□□ -0.13
TCOF1-207ENST00000504761 DOLKQ9UPQ8 538 aa14.21□□□□□ -0.13
TCOF1-207ENST00000504761 AKAP10O43572 662 aa14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms