RNA–Protein interactions for RNA: ENST00000493582.5

HDAC4-210, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,188 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-210ENST00000493582 RGS7P49802 495 aa11.82□□□□□ -0.52
HDAC4-210ENST00000493582 HLCSP50747 726 aa11.82□□□□□ -0.52
HDAC4-210ENST00000493582 YBX1P67809 324 aaKnown RBP11.82□□□□□ -0.52
HDAC4-210ENST00000493582 IFITM2Q01629 132 aa11.82□□□□□ -0.52
HDAC4-210ENST00000493582 CLCQ05315 142 aa11.82□□□□□ -0.52
HDAC4-210ENST00000493582 PRPSAP1Q14558 356 aa11.82□□□□□ -0.52
HDAC4-210ENST00000493582 MAPK11Q15759 364 aa11.82□□□□□ -0.52
HDAC4-210ENST00000493582 SAMD4BQ5PRF9 694 aaKnown RBP11.82□□□□□ -0.52
HDAC4-210ENST00000493582 TRAPPC3LQ5T215 181 aa11.82□□□□□ -0.52
HDAC4-210ENST00000493582 AGAP7PQ5VUJ5 663 aa11.82□□□□□ -0.52
HDAC4-210ENST00000493582 FAM183BPQ6ZVS7 135 aa11.82□□□□□ -0.52
HDAC4-210ENST00000493582 WDR49Q8IV35 697 aa11.82□□□□□ -0.52
HDAC4-210ENST00000493582 SPNS2Q8IVW8 549 aa11.82□□□□□ -0.52
HDAC4-210ENST00000493582 CLIP4Q8N3C7 705 aa11.82□□□□□ -0.52
HDAC4-210ENST00000493582 PACRGLQ8N7B6 248 aa11.82□□□□□ -0.52
HDAC4-210ENST00000493582 HTR3CQ8WXA8 447 aa11.82□□□□□ -0.52
HDAC4-210ENST00000493582 CPB2Q96IY4 423 aa11.82□□□□□ -0.52
HDAC4-210ENST00000493582 RMDN3Q96TC7 470 aa11.82□□□□□ -0.52
HDAC4-210ENST00000493582 BEGAINQ9BUH8 593 aa11.82□□□□□ -0.52
HDAC4-210ENST00000493582 TRIM8Q9BZR9 551 aa11.82□□□□□ -0.52
HDAC4-210ENST00000493582 SEPT10Q9P0V9 454 aa11.82□□□□□ -0.52
HDAC4-210ENST00000493582 RUVBL2Q9Y230 463 aaKnown RBP11.82□□□□□ -0.52
HDAC4-210ENST00000493582 TIMM22Q9Y584 194 aa11.82□□□□□ -0.52
HDAC4-210ENST00000493582 CCDC78A2IDD5 438 aa11.81□□□□□ -0.52
HDAC4-210ENST00000493582 ANKRD34BA5PLL1 514 aa11.81□□□□□ -0.52
HDAC4-210ENST00000493582 SEC14L2O76054 403 aa11.81□□□□□ -0.52
HDAC4-210ENST00000493582 MPOP05164 745 aa11.81□□□□□ -0.52
HDAC4-210ENST00000493582 HSPA8P11142 646 aaKnown RBP11.81□□□□□ -0.52
HDAC4-210ENST00000493582 MBL2P11226 248 aaPredicted RBP11.81□□□□□ -0.52
HDAC4-210ENST00000493582 MLNP12872 115 aa11.81□□□□□ -0.52
HDAC4-210ENST00000493582 FASP25445 335 aa11.81□□□□□ -0.52
HDAC4-210ENST00000493582 LRPAP1P30533 357 aa11.81□□□□□ -0.52
HDAC4-210ENST00000493582 NR4A2P43354 598 aa11.81□□□□□ -0.52
HDAC4-210ENST00000493582 PRKAA2P54646 552 aa11.81□□□□□ -0.52
HDAC4-210ENST00000493582 ZNF846Q147U1 533 aa11.81□□□□□ -0.52
HDAC4-210ENST00000493582 EMC2Q15006 297 aa11.81□□□□□ -0.52
HDAC4-210ENST00000493582 ZIK1Q3SY52 487 aaPredicted RBP11.81□□□□□ -0.52
HDAC4-210ENST00000493582 IQSEC1Q6DN90 963 aa11.81□□□□□ -0.52
HDAC4-210ENST00000493582 C4orf22Q6V702 233 aa11.81□□□□□ -0.52
HDAC4-210ENST00000493582 BRSK2Q8IWQ3 736 aa11.81□□□□□ -0.52
HDAC4-210ENST00000493582 DDIASQ8IXT1 998 aa11.81□□□□□ -0.52
HDAC4-210ENST00000493582 SLC7A14Q8TBB6 771 aa11.81□□□□□ -0.52
HDAC4-210ENST00000493582 ZFP90Q8TF47 636 aa11.81□□□□□ -0.52
HDAC4-210ENST00000493582 RAB2BQ8WUD1 216 aa11.81□□□□□ -0.52
HDAC4-210ENST00000493582 KCTD4Q8WVF5 259 aa11.81□□□□□ -0.52
HDAC4-210ENST00000493582 TUBA1CQ9BQE3 449 aa11.81□□□□□ -0.52
HDAC4-210ENST00000493582 SEZ6LQ9BYH1 1024 aa11.81□□□□□ -0.52
HDAC4-210ENST00000493582 GTSE1Q9NYZ3 720 aa11.81□□□□□ -0.52
HDAC4-210ENST00000493582 ANKMY1Q9P2S6 941 aa11.81□□□□□ -0.52
HDAC4-210ENST00000493582 H0YCG3 227 aa11.81□□□□□ -0.52
HDAC4-210ENST00000493582 POLRMTO00411 1230 aaKnown RBP11.81□□□□□ -0.52
HDAC4-210ENST00000493582 DLX3O60479 287 aa11.81□□□□□ -0.52
HDAC4-210ENST00000493582 XYLBO75191 536 aa11.81□□□□□ -0.52
HDAC4-210ENST00000493582 RSL1D1O76021 490 aaKnown RBP11.81□□□□□ -0.52
HDAC4-210ENST00000493582 CPNE6O95741 557 aa11.81□□□□□ -0.52
HDAC4-210ENST00000493582 TGM1P22735 817 aa11.81□□□□□ -0.52
HDAC4-210ENST00000493582 PSMB4P28070 264 aa11.81□□□□□ -0.52
HDAC4-210ENST00000493582 CAPGP40121 348 aa11.81□□□□□ -0.52
HDAC4-210ENST00000493582 PLA2G16P53816 162 aa11.81□□□□□ -0.52
HDAC4-210ENST00000493582 MPP1Q00013 466 aa11.81□□□□□ -0.52
HDAC4-210ENST00000493582 OCA2Q04671 838 aa11.81□□□□□ -0.52
HDAC4-210ENST00000493582 NAB1Q13506 487 aa11.81□□□□□ -0.52
HDAC4-210ENST00000493582 XAF1Q6GPH4 301 aa11.81□□□□□ -0.52
HDAC4-210ENST00000493582 RNF19BQ6ZMZ0 732 aa11.81□□□□□ -0.52
HDAC4-210ENST00000493582 RPS27LQ71UM5 84 aaKnown RBP11.81□□□□□ -0.52
HDAC4-210ENST00000493582 FSTL5Q8N475 847 aaPredicted RBP11.81□□□□□ -0.52
HDAC4-210ENST00000493582 OR52K1Q8NGK4 314 aa11.81□□□□□ -0.52
HDAC4-210ENST00000493582 CERKQ8TCT0 537 aa11.81□□□□□ -0.52
HDAC4-210ENST00000493582 HDAC10Q969S8 669 aa11.81□□□□□ -0.52
HDAC4-210ENST00000493582 MFSD3Q96ES6 412 aa11.81□□□□□ -0.52
HDAC4-210ENST00000493582 C9orf16Q9BUW7 83 aa11.81□□□□□ -0.52
HDAC4-210ENST00000493582 GPN2Q9H9Y4 310 aaPredicted RBP11.81□□□□□ -0.52
HDAC4-210ENST00000493582 RAVER2Q9HCJ3 691 aaKnown RBP11.81□□□□□ -0.52
HDAC4-210ENST00000493582 DTLQ9NZJ0 730 aa11.81□□□□□ -0.52
HDAC4-210ENST00000493582 SLCO1B7G3V0H7 640 aa11.81□□□□□ -0.52
HDAC4-210ENST00000493582 BCAS1O75363 584 aaPredicted RBP11.81□□□□□ -0.52
HDAC4-210ENST00000493582 ICAM1P05362 532 aa11.81□□□□□ -0.52
HDAC4-210ENST00000493582 SNRPB2P08579 225 aaKnown RBP11.81□□□□□ -0.52
HDAC4-210ENST00000493582 CCT8P50990 548 aa11.81□□□□□ -0.52
HDAC4-210ENST00000493582 ARPC4P59998 168 aa11.81□□□□□ -0.52
HDAC4-210ENST00000493582 PTPN11Q06124 597 aaPredicted RBP11.81□□□□□ -0.52
HDAC4-210ENST00000493582 ATP6AP1Q15904 470 aa11.81□□□□□ -0.52
HDAC4-210ENST00000493582 GTF2IRD2BQ6EKJ0 949 aa11.81□□□□□ -0.52
HDAC4-210ENST00000493582 GTF2IRD2Q86UP8 949 aa11.81□□□□□ -0.52
HDAC4-210ENST00000493582 FAM35AQ86V20 835 aa11.81□□□□□ -0.52
HDAC4-210ENST00000493582 ANKRD13BQ86YJ7 626 aa11.81□□□□□ -0.52
HDAC4-210ENST00000493582 COLGALT2Q8IYK4 626 aa11.81□□□□□ -0.52
HDAC4-210ENST00000493582 ANKRD13AQ8IZ07 590 aa11.81□□□□□ -0.52
HDAC4-210ENST00000493582 PELI3Q8N2H9 469 aa11.81□□□□□ -0.52
HDAC4-210ENST00000493582 SPPL2BQ8TCT7 592 aa11.81□□□□□ -0.52
HDAC4-210ENST00000493582 ISL2Q96A47 359 aa11.81□□□□□ -0.52
HDAC4-210ENST00000493582 MUS81Q96NY9 551 aa11.81□□□□□ -0.52
HDAC4-210ENST00000493582 IL12RB2Q99665 862 aa11.81□□□□□ -0.52
HDAC4-210ENST00000493582 HMG20AQ9NP66 347 aa11.81□□□□□ -0.52
HDAC4-210ENST00000493582 CD320Q9NPF0 282 aa11.81□□□□□ -0.52
HDAC4-210ENST00000493582 SCUBE2Q9NQ36 999 aa11.81□□□□□ -0.52
HDAC4-210ENST00000493582 SMPD3Q9NY59 655 aaPredicted RBP11.81□□□□□ -0.52
HDAC4-210ENST00000493582 CCNL1Q9UK58 526 aaPredicted RBP11.81□□□□□ -0.52
HDAC4-210ENST00000493582 IFT52Q9Y366 437 aa11.81□□□□□ -0.52
HDAC4-210ENST00000493582 SNX9Q9Y5X1 595 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms