RNA–Protein interactions for RNA: ENST00000492859.5

BRCA1-220, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-220ENST00000492859 SH3BP4Q9P0V3 963 aa4.28□□□□□ -1.72
BRCA1-220ENST00000492859 MARCH4Q9P2E8 410 aaPredicted RBP4.28□□□□□ -1.72
BRCA1-220ENST00000492859 CPNE7Q9UBL6 633 aa4.28□□□□□ -1.72
BRCA1-220ENST00000492859 CNOT7Q9UIV1 285 aaKnown RBP4.28□□□□□ -1.72
BRCA1-220ENST00000492859 GGA1Q9UJY5 639 aa4.28□□□□□ -1.72
BRCA1-220ENST00000492859 RNF24Q9Y225 148 aa4.28□□□□□ -1.72
BRCA1-220ENST00000492859 SLC9A8Q9Y2E8 581 aa4.28□□□□□ -1.72
BRCA1-220ENST00000492859 TBC1D30Q9Y2I9 924 aa4.28□□□□□ -1.72
BRCA1-220ENST00000492859 STARD13Q9Y3M8 1113 aa4.28□□□□□ -1.72
BRCA1-220ENST00000492859 PARD3Q8TEW0 1356 aa4.28□□□□□ -1.72
BRCA1-220ENST00000492859 MACROD2A1Z1Q3 448 aa4.27□□□□□ -1.73
BRCA1-220ENST00000492859 TYW5A2RUC4 315 aaKnown RBP4.27□□□□□ -1.73
BRCA1-220ENST00000492859 TRIM49BA6NDI0 452 aa4.27□□□□□ -1.73
BRCA1-220ENST00000492859 BTBD17A6NE02 478 aa4.27□□□□□ -1.73
BRCA1-220ENST00000492859 PSMD11O00231 422 aa4.27□□□□□ -1.73
BRCA1-220ENST00000492859 XPO1O14980 1071 aaKnown RBP4.27□□□□□ -1.73
BRCA1-220ENST00000492859 LRRTM2O43300 516 aa4.27□□□□□ -1.73
BRCA1-220ENST00000492859 HTRA2O43464 458 aaPredicted RBP4.27□□□□□ -1.73
BRCA1-220ENST00000492859 WIPF1O43516 503 aa4.27□□□□□ -1.73
BRCA1-220ENST00000492859 SSX5O60225 188 aa4.27□□□□□ -1.73
BRCA1-220ENST00000492859 DNAJA2O60884 412 aa4.27□□□□□ -1.73
BRCA1-220ENST00000492859 ECI2O75521 394 aa4.27□□□□□ -1.73
BRCA1-220ENST00000492859 RPP40O75818 363 aaKnown RBP4.27□□□□□ -1.73
BRCA1-220ENST00000492859 DDAH2O95865 285 aa4.27□□□□□ -1.73
BRCA1-220ENST00000492859 PCCBP05166 539 aa4.27□□□□□ -1.73
BRCA1-220ENST00000492859 CLTAP09496 248 aa4.27□□□□□ -1.73
BRCA1-220ENST00000492859 CALB2P22676 271 aa4.27□□□□□ -1.73
BRCA1-220ENST00000492859 TUBG1P23258 451 aa4.27□□□□□ -1.73
BRCA1-220ENST00000492859 CD1BP29016 333 aa4.27□□□□□ -1.73
BRCA1-220ENST00000492859 PDHA2P29803 388 aa4.27□□□□□ -1.73
BRCA1-220ENST00000492859 HLA-FP30511 346 aa4.27□□□□□ -1.73
BRCA1-220ENST00000492859 CTNNB1P35222 781 aa4.27□□□□□ -1.73
BRCA1-220ENST00000492859 SREBF1P36956 1147 aa4.27□□□□□ -1.73
BRCA1-220ENST00000492859 SLC26A3P40879 764 aa4.27□□□□□ -1.73
BRCA1-220ENST00000492859 GPR4P46093 362 aa4.27□□□□□ -1.73
BRCA1-220ENST00000492859 MAP2K6P52564 334 aa4.27□□□□□ -1.73
BRCA1-220ENST00000492859 RTP1P59025 263 aa4.27□□□□□ -1.73
BRCA1-220ENST00000492859 KIAA1024LP59773 190 aa4.27□□□□□ -1.73
BRCA1-220ENST00000492859 GUCY1A3Q02108 690 aa4.27□□□□□ -1.73
BRCA1-220ENST00000492859 RASGEF1BQ0VAM2 473 aa4.27□□□□□ -1.73
BRCA1-220ENST00000492859 TEFQ10587 303 aa4.27□□□□□ -1.73
BRCA1-220ENST00000492859 TBL3Q12788 808 aaKnown RBP4.27□□□□□ -1.73
BRCA1-220ENST00000492859 ADAM9Q13443 819 aa4.27□□□□□ -1.73
BRCA1-220ENST00000492859 KCNAB1Q14722 419 aa4.27□□□□□ -1.73
BRCA1-220ENST00000492859 SKIDA1Q1XH10 827 aa4.27□□□□□ -1.73
BRCA1-220ENST00000492859 MTHFSDQ2M296 383 aaKnown RBP4.27□□□□□ -1.73
BRCA1-220ENST00000492859 FAM76BQ5HYJ3 339 aa4.27□□□□□ -1.73
BRCA1-220ENST00000492859 PAGE2BQ5JRK9 111 aa4.27□□□□□ -1.73
BRCA1-220ENST00000492859 PIP5KL1Q5T9C9 394 aa4.27□□□□□ -1.73
BRCA1-220ENST00000492859 ARMC6Q6NXE6 501 aa4.27□□□□□ -1.73
BRCA1-220ENST00000492859 FAM122CQ6P4D5 195 aa4.27□□□□□ -1.73
BRCA1-220ENST00000492859 LAYNQ6UX15 382 aa4.27□□□□□ -1.73
BRCA1-220ENST00000492859 CRELD2Q6UXH1 353 aaPredicted RBP4.27□□□□□ -1.73
BRCA1-220ENST00000492859 MPRIPQ6WCQ1 1025 aa4.27□□□□□ -1.73
BRCA1-220ENST00000492859 SLC30A10Q6XR72 485 aa4.27□□□□□ -1.73
BRCA1-220ENST00000492859 SCARA5Q6ZMJ2 495 aa4.27□□□□□ -1.73
BRCA1-220ENST00000492859 PIK3AP1Q6ZUJ8 805 aa4.27□□□□□ -1.73
BRCA1-220ENST00000492859 CYP4V2Q6ZWL3 525 aaPredicted RBP4.27□□□□□ -1.73
BRCA1-220ENST00000492859 ZSCAN2Q7Z7L9 614 aaPredicted RBP4.27□□□□□ -1.73
BRCA1-220ENST00000492859 USP37Q86T82 979 aa4.27□□□□□ -1.73
BRCA1-220ENST00000492859 RASAL3Q86YV0 1011 aa4.27□□□□□ -1.73
BRCA1-220ENST00000492859 NELFCDQ8IXH7 590 aa4.27□□□□□ -1.73
BRCA1-220ENST00000492859 CCDC36Q8IYA8 594 aa4.27□□□□□ -1.73
BRCA1-220ENST00000492859 KDM8Q8N371 416 aa4.27□□□□□ -1.73
BRCA1-220ENST00000492859 GPR161Q8N6U8 529 aaKnown RBP4.27□□□□□ -1.73
BRCA1-220ENST00000492859 ENDOVQ8N8Q3 282 aaKnown RBP4.27□□□□□ -1.73
BRCA1-220ENST00000492859 SNX31Q8N9S9 440 aa4.27□□□□□ -1.73
BRCA1-220ENST00000492859 CHST14Q8NCH0 376 aa4.27□□□□□ -1.73
BRCA1-220ENST00000492859 FLAD1Q8NFF5 587 aa4.27□□□□□ -1.73
BRCA1-220ENST00000492859 OR8J2Q8NGG1 315 aa4.27□□□□□ -1.73
BRCA1-220ENST00000492859 OR8J1Q8NGP2 316 aa4.27□□□□□ -1.73
BRCA1-220ENST00000492859 OR10Z1Q8NGY1 313 aa4.27□□□□□ -1.73
BRCA1-220ENST00000492859 GADD45GIP1Q8TAE8 222 aaPredicted RBP4.27□□□□□ -1.73
BRCA1-220ENST00000492859 XAGE3Q8WTP9 111 aa4.27□□□□□ -1.73
BRCA1-220ENST00000492859 SSH1Q8WYL5 1049 aa4.27□□□□□ -1.73
BRCA1-220ENST00000492859 MSLNLQ96KJ4 702 aa4.27□□□□□ -1.73
BRCA1-220ENST00000492859 CCDC42Q96M95 316 aa4.27□□□□□ -1.73
BRCA1-220ENST00000492859 HHIPQ96QV1 700 aa4.27□□□□□ -1.73
BRCA1-220ENST00000492859 RIT2Q99578 217 aa4.27□□□□□ -1.73
BRCA1-220ENST00000492859 TPPP3Q9BW30 176 aa4.27□□□□□ -1.73
BRCA1-220ENST00000492859 ADGRE3Q9BY15 652 aa4.27□□□□□ -1.73
BRCA1-220ENST00000492859 KRTAP9-2Q9BYQ4 174 aa4.27□□□□□ -1.73
BRCA1-220ENST00000492859 TRIM31Q9BZY9 425 aa4.27□□□□□ -1.73
BRCA1-220ENST00000492859 FAM192AQ9GZU8 254 aa4.27□□□□□ -1.73
BRCA1-220ENST00000492859 OSGEPL1Q9H4B0 414 aa4.27□□□□□ -1.73
BRCA1-220ENST00000492859 TUBG2Q9NRH3 451 aa4.27□□□□□ -1.73
BRCA1-220ENST00000492859 TM7SF3Q9NS93 570 aa4.27□□□□□ -1.73
BRCA1-220ENST00000492859 HYPKQ9NX55 129 aa4.27□□□□□ -1.73
BRCA1-220ENST00000492859 KLHL28Q9NXS3 571 aa4.27□□□□□ -1.73
BRCA1-220ENST00000492859 DTLQ9NZJ0 730 aa4.27□□□□□ -1.73
BRCA1-220ENST00000492859 CTSFQ9UBX1 484 aa4.27□□□□□ -1.73
BRCA1-220ENST00000492859 CIDEBQ9UHD4 219 aa4.27□□□□□ -1.73
BRCA1-220ENST00000492859 LCMT1Q9UIC8 334 aa4.27□□□□□ -1.73
BRCA1-220ENST00000492859 TUBE1Q9UJT0 475 aa4.27□□□□□ -1.73
BRCA1-220ENST00000492859 TSPAN16Q9UKR8 245 aa4.27□□□□□ -1.73
BRCA1-220ENST00000492859 TMCO1Q9UM00 188 aa4.27□□□□□ -1.73
BRCA1-220ENST00000492859 GABRQQ9UN88 632 aa4.27□□□□□ -1.73
BRCA1-220ENST00000492859 DTX4Q9Y2E6 619 aa4.27□□□□□ -1.73
BRCA1-220ENST00000492859 STRAPQ9Y3F4 350 aaKnown RBP4.27□□□□□ -1.73
BRCA1-220ENST00000492859 NOC2LQ9Y3T9 749 aaKnown RBP4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms