RNA–Protein interactions for RNA: ENST00000490689.3

SHOX2-205, Transcript of short stature homeobox 2, humanhuman

TSL 5

Gene SHOX2, Length 4,184 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-205ENST00000490689 ULBP1Q9BZM6 244 aa12.96□□□□□ -0.34
SHOX2-205ENST00000490689 KANSL1LA0AUZ9 987 aa12.95□□□□□ -0.34
SHOX2-205ENST00000490689 GPR25O00155 361 aa12.95□□□□□ -0.34
SHOX2-205ENST00000490689 LSM1O15116 133 aaKnown RBP12.95□□□□□ -0.34
SHOX2-205ENST00000490689 SYNCRIPO60506 623 aaKnown RBP12.95□□□□□ -0.34
SHOX2-205ENST00000490689 GCATO75600 419 aa12.95□□□□□ -0.34
SHOX2-205ENST00000490689 RNASEH2AO75792 299 aaKnown RBP12.95□□□□□ -0.34
SHOX2-205ENST00000490689 NMBRP28336 390 aa12.95□□□□□ -0.34
SHOX2-205ENST00000490689 TTKP33981 857 aa12.95□□□□□ -0.34
SHOX2-205ENST00000490689 GRIK1P39086 918 aa12.95□□□□□ -0.34
SHOX2-205ENST00000490689 RABGGTBP53611 331 aa12.95□□□□□ -0.34
SHOX2-205ENST00000490689 DPYSQ14117 519 aa12.95□□□□□ -0.34
SHOX2-205ENST00000490689 NR6A1Q15406 480 aa12.95□□□□□ -0.34
SHOX2-205ENST00000490689 KYAT1Q16773 422 aa12.95□□□□□ -0.34
SHOX2-205ENST00000490689 PAGE2BQ5JRK9 111 aa12.95□□□□□ -0.34
SHOX2-205ENST00000490689 LRRC8DQ7L1W4 858 aa12.95□□□□□ -0.34
SHOX2-205ENST00000490689 SPATA22Q8NHS9 363 aa12.95□□□□□ -0.34
SHOX2-205ENST00000490689 ITFG1Q8TB96 612 aa12.95□□□□□ -0.34
SHOX2-205ENST00000490689 DCPSQ96C86 337 aaKnown RBP12.95□□□□□ -0.34
SHOX2-205ENST00000490689 TKTL2Q9H0I9 626 aa12.95□□□□□ -0.34
SHOX2-205ENST00000490689 FANCEQ9HB96 536 aa12.95□□□□□ -0.34
SHOX2-205ENST00000490689 GIMAP4Q9NUV9 329 aa12.95□□□□□ -0.34
SHOX2-205ENST00000490689 TRAF6Q9Y4K3 522 aa12.95□□□□□ -0.34
SHOX2-205ENST00000490689 COPG1Q9Y678 874 aaKnown RBP12.95□□□□□ -0.34
SHOX2-205ENST00000490689 CCDC88AQ3V6T2 1871 aa12.95□□□□□ -0.34
SHOX2-205ENST00000490689 A0A0J9YYE9 177 aa12.95□□□□□ -0.34
SHOX2-205ENST00000490689 CCDC154A6NI56 674 aa12.95□□□□□ -0.34
SHOX2-205ENST00000490689 C19orf81C9J6K1 198 aa12.95□□□□□ -0.34
SHOX2-205ENST00000490689 GAS2O43903 313 aaKnown RBP12.95□□□□□ -0.34
SHOX2-205ENST00000490689 MAFO75444 373 aaPredicted RBP12.95□□□□□ -0.34
SHOX2-205ENST00000490689 CPB1P15086 417 aa12.95□□□□□ -0.34
SHOX2-205ENST00000490689 SEMA5AQ13591 1074 aa12.95□□□□□ -0.34
SHOX2-205ENST00000490689 CEACAM7Q14002 265 aa12.95□□□□□ -0.34
SHOX2-205ENST00000490689 TMEM132BQ14DG7 1078 aa12.95□□□□□ -0.34
SHOX2-205ENST00000490689 HSDL1Q3SXM5 330 aa12.95□□□□□ -0.34
SHOX2-205ENST00000490689 TIGD2Q4W5G0 525 aa12.95□□□□□ -0.34
SHOX2-205ENST00000490689 KCTD8Q6ZWB6 473 aa12.95□□□□□ -0.34
SHOX2-205ENST00000490689 TAS1R3Q7RTX0 852 aa12.95□□□□□ -0.34
SHOX2-205ENST00000490689 OR7A2PQ8NGA2 310 aa12.95□□□□□ -0.34
SHOX2-205ENST00000490689 OR2T34Q8NGX1 318 aa12.95□□□□□ -0.34
SHOX2-205ENST00000490689 OR2T3Q8NH03 318 aa12.95□□□□□ -0.34
SHOX2-205ENST00000490689 HTRA1Q92743 480 aa12.95□□□□□ -0.34
SHOX2-205ENST00000490689 C12orf43Q96C57 262 aaKnown RBP12.95□□□□□ -0.34
SHOX2-205ENST00000490689 UNC93B1Q9H1C4 597 aa12.95□□□□□ -0.34
SHOX2-205ENST00000490689 RIC8BQ9NVN3 520 aa12.95□□□□□ -0.34
SHOX2-205ENST00000490689 OR12D3Q9UGF7 316 aa12.95□□□□□ -0.34
SHOX2-205ENST00000490689 CIDEBQ9UHD4 219 aa12.95□□□□□ -0.34
SHOX2-205ENST00000490689 PPME1Q9Y570 386 aa12.95□□□□□ -0.34
SHOX2-205ENST00000490689 TP73O15350 636 aa12.95□□□□□ -0.34
SHOX2-205ENST00000490689 CD4P01730 458 aa12.95□□□□□ -0.34
SHOX2-205ENST00000490689 PIRTP0C851 137 aa12.95□□□□□ -0.34
SHOX2-205ENST00000490689 ALOX12P18054 663 aa12.95□□□□□ -0.34
SHOX2-205ENST00000490689 FAM98BQ52LJ0 330 aaKnown RBP12.95□□□□□ -0.34
SHOX2-205ENST00000490689 MFSD4BQ5TF39 518 aa12.95□□□□□ -0.34
SHOX2-205ENST00000490689 BROXQ5VW32 411 aa12.95□□□□□ -0.34
SHOX2-205ENST00000490689 RNF19BQ6ZMZ0 732 aa12.95□□□□□ -0.34
SHOX2-205ENST00000490689 RALGPS2Q86X27 583 aaPredicted RBP12.95□□□□□ -0.34
SHOX2-205ENST00000490689 RHOJQ9H4E5 214 aa12.95□□□□□ -0.34
SHOX2-205ENST00000490689 ELP3Q9H9T3 547 aa12.95□□□□□ -0.34
SHOX2-205ENST00000490689 ARHGEF4Q9NR80 690 aa12.95□□□□□ -0.34
SHOX2-205ENST00000490689 CYTH4Q9UIA0 394 aa12.95□□□□□ -0.34
SHOX2-205ENST00000490689 PNMA8BQ9ULN7 279 aaPredicted RBP12.95□□□□□ -0.34
SHOX2-205ENST00000490689 UBQLN1Q9UMX0 589 aaKnown RBP12.95□□□□□ -0.34
SHOX2-205ENST00000490689 SPATA31C2B4DYI2 1134 aa12.95□□□□□ -0.34
SHOX2-205ENST00000490689 H3BNX3 289 aa12.95□□□□□ -0.34
SHOX2-205ENST00000490689 DHRS4L1P0CG22 281 aa12.95□□□□□ -0.34
SHOX2-205ENST00000490689 NOVP48745 357 aa12.95□□□□□ -0.34
SHOX2-205ENST00000490689 PRKAA2P54646 552 aa12.95□□□□□ -0.34
SHOX2-205ENST00000490689 REP15Q6BDI9 236 aa12.95□□□□□ -0.34
SHOX2-205ENST00000490689 TMEM214Q6NUQ4 689 aaKnown RBP12.95□□□□□ -0.34
SHOX2-205ENST00000490689 C8orf59Q8N0T1 100 aaPredicted RBP12.95□□□□□ -0.34
SHOX2-205ENST00000490689 ZNF276Q8N554 614 aa12.95□□□□□ -0.34
SHOX2-205ENST00000490689 CHST13Q8NET6 341 aa12.95□□□□□ -0.34
SHOX2-205ENST00000490689 REXO4Q9GZR2 422 aaKnown RBP12.95□□□□□ -0.34
SHOX2-205ENST00000490689 SOX17Q9H6I2 414 aaPredicted RBP12.95□□□□□ -0.34
SHOX2-205ENST00000490689 CASS4Q9NQ75 786 aa12.95□□□□□ -0.34
SHOX2-205ENST00000490689 LATS2Q9NRM7 1088 aa12.95□□□□□ -0.34
SHOX2-205ENST00000490689 PHF24Q9UPV7 400 aa12.95□□□□□ -0.34
SHOX2-205ENST00000490689 SQORQ9Y6N5 450 aa12.95□□□□□ -0.34
SHOX2-205ENST00000490689 TMEM247A6NEH6 219 aa12.94□□□□□ -0.34
SHOX2-205ENST00000490689 CAPN14A8MX76 684 aa12.94□□□□□ -0.34
SHOX2-205ENST00000490689 CTSHP09668 335 aa12.94□□□□□ -0.34
SHOX2-205ENST00000490689 CCDC159P0C7I6 412 aa12.94□□□□□ -0.34
SHOX2-205ENST00000490689 MILR1Q7Z6M3 343 aa12.94□□□□□ -0.34
SHOX2-205ENST00000490689 NT5DC4Q86YG4 428 aa12.94□□□□□ -0.34
SHOX2-205ENST00000490689 SLC22A9Q8IVM8 553 aa12.94□□□□□ -0.34
SHOX2-205ENST00000490689 QKIQ96PU8 341 aaKnown RBP eCLIP12.94□□□□□ -0.34
SHOX2-205ENST00000490689 TBL1YQ9BQ87 522 aa12.94□□□□□ -0.34
SHOX2-205ENST00000490689 STRA6Q9BX79 667 aa12.94□□□□□ -0.34
SHOX2-205ENST00000490689 RIBC2Q9H4K1 309 aa12.94□□□□□ -0.34
SHOX2-205ENST00000490689 USP29Q9HBJ7 922 aa12.94□□□□□ -0.34
SHOX2-205ENST00000490689 NUMBLQ9Y6R0 609 aa12.94□□□□□ -0.34
SHOX2-205ENST00000490689 TAF1P21675 1872 aa12.94□□□□□ -0.34
SHOX2-205ENST00000490689 EI24O14681 340 aa12.94□□□□□ -0.34
SHOX2-205ENST00000490689 NADKO95544 446 aaPredicted RBP12.94□□□□□ -0.34
SHOX2-205ENST00000490689 SPATA31D3P0C874 917 aa12.94□□□□□ -0.34
SHOX2-205ENST00000490689 PTPN1P18031 435 aaKnown RBP12.94□□□□□ -0.34
SHOX2-205ENST00000490689 SEPHS1P49903 392 aa12.94□□□□□ -0.34
SHOX2-205ENST00000490689 PPP1R8Q12972 351 aaKnown RBP12.94□□□□□ -0.34
SHOX2-205ENST00000490689 STYK1Q6J9G0 422 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms