RNA–Protein interactions for RNA: ENST00000489862.1

DEPDC1-204, Transcript of DEP domain containing 1, humanhuman

TSL 1 (best)

Gene DEPDC1, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC1-204ENST00000489862 SOCS4Q8WXH5 440 aa3.36□□□□□ -1.87
DEPDC1-204ENST00000489862 AK8Q96MA6 479 aa3.36□□□□□ -1.87
DEPDC1-204ENST00000489862 C5orf34Q96MH7 638 aa3.36□□□□□ -1.87
DEPDC1-204ENST00000489862 CLSTN3Q9BQT9 956 aa3.36□□□□□ -1.87
DEPDC1-204ENST00000489862 STRA6Q9BX79 667 aa3.36□□□□□ -1.87
DEPDC1-204ENST00000489862 SLC25A32Q9H2D1 315 aa3.36□□□□□ -1.87
DEPDC1-204ENST00000489862 MROH8Q9H579 483 aa3.36□□□□□ -1.87
DEPDC1-204ENST00000489862 LIN28AQ9H9Z2 209 aaKnown RBP3.36□□□□□ -1.87
DEPDC1-204ENST00000489862 PDGFCQ9NRA1 345 aa3.36□□□□□ -1.87
DEPDC1-204ENST00000489862 TAS2R10Q9NYW0 307 aa3.36□□□□□ -1.87
DEPDC1-204ENST00000489862 SARDHQ9UL12 918 aa3.36□□□□□ -1.87
DEPDC1-204ENST00000489862 TROQ12816 1431 aaPredicted RBP3.36□□□□□ -1.87
DEPDC1-204ENST00000489862 ABCA9Q8IUA7 1624 aa3.36□□□□□ -1.87
DEPDC1-204ENST00000489862 FYCO1Q9BQS8 1478 aa3.35□□□□□ -1.87
DEPDC1-204ENST00000489862 PNMA6EA0A0J9YXQ4 647 aa3.35□□□□□ -1.87
DEPDC1-204ENST00000489862 LOC102723971A0A1B0GUV8 181 aa3.35□□□□□ -1.87
DEPDC1-204ENST00000489862 SMIM35A0A1B0GVV1 85 aa3.35□□□□□ -1.87
DEPDC1-204ENST00000489862 A0A1W2PQF6 199 aa3.35□□□□□ -1.87
DEPDC1-204ENST00000489862 LIPT2A6NK58 231 aa3.35□□□□□ -1.87
DEPDC1-204ENST00000489862 SLC38A8A6NNN8 435 aa3.35□□□□□ -1.87
DEPDC1-204ENST00000489862 SNAP23O00161 211 aa3.35□□□□□ -1.87
DEPDC1-204ENST00000489862 EXOC3O60645 756 aa3.35□□□□□ -1.87
DEPDC1-204ENST00000489862 KINO60870 393 aaKnown RBP3.35□□□□□ -1.87
DEPDC1-204ENST00000489862 CBFA2T3O75081 653 aa3.35□□□□□ -1.87
DEPDC1-204ENST00000489862 SOCS5O75159 536 aa3.35□□□□□ -1.87
DEPDC1-204ENST00000489862 COQ9O75208 318 aa3.35□□□□□ -1.87
DEPDC1-204ENST00000489862 PIAS2O75928 621 aa3.35□□□□□ -1.87
DEPDC1-204ENST00000489862 TSPAN9O75954 239 aa3.35□□□□□ -1.87
DEPDC1-204ENST00000489862 VIPP01282 170 aa3.35□□□□□ -1.87
DEPDC1-204ENST00000489862 TFRCP02786 760 aaKnown RBP3.35□□□□□ -1.87
DEPDC1-204ENST00000489862 URODP06132 367 aa3.35□□□□□ -1.87
DEPDC1-204ENST00000489862 QDPRP09417 244 aa3.35□□□□□ -1.87
DEPDC1-204ENST00000489862 SPARCP09486 303 aa3.35□□□□□ -1.87
DEPDC1-204ENST00000489862 LYL1P12980 280 aa3.35□□□□□ -1.87
DEPDC1-204ENST00000489862 ACP5P13686 325 aa3.35□□□□□ -1.87
DEPDC1-204ENST00000489862 TPH1P17752 444 aa3.35□□□□□ -1.87
DEPDC1-204ENST00000489862 NFKBIAP25963 317 aa3.35□□□□□ -1.87
DEPDC1-204ENST00000489862 ARHGAP25P42331 645 aa3.35□□□□□ -1.87
DEPDC1-204ENST00000489862 DGKEP52429 567 aa3.35□□□□□ -1.87
DEPDC1-204ENST00000489862 TPTEP56180 551 aa3.35□□□□□ -1.87
DEPDC1-204ENST00000489862 MRPS5P82675 430 aaKnown RBP3.35□□□□□ -1.87
DEPDC1-204ENST00000489862 SF3A3Q12874 501 aaKnown RBP eCLIP3.35□□□□□ -1.87
DEPDC1-204ENST00000489862 TMEM115Q12893 351 aaPredicted RBP3.35□□□□□ -1.87
DEPDC1-204ENST00000489862 PRPF4BQ13523 1007 aaKnown RBP3.35□□□□□ -1.87
DEPDC1-204ENST00000489862 ATP1A4Q13733 1029 aa3.35□□□□□ -1.87
DEPDC1-204ENST00000489862 SHROOM1Q2M3G4 852 aaPredicted RBP3.35□□□□□ -1.87
DEPDC1-204ENST00000489862 TBC1D25Q3MII6 688 aa3.35□□□□□ -1.87
DEPDC1-204ENST00000489862 DGAT2L7PQ6IED9 249 aa3.35□□□□□ -1.87
DEPDC1-204ENST00000489862 CYP20A1Q6UW02 462 aa3.35□□□□□ -1.87
DEPDC1-204ENST00000489862 KIRREL2Q6UWL6 708 aa3.35□□□□□ -1.87
DEPDC1-204ENST00000489862 ISLR2Q6UXK2 745 aa3.35□□□□□ -1.87
DEPDC1-204ENST00000489862 DPY19L3Q6ZPD9 716 aa3.35□□□□□ -1.87
DEPDC1-204ENST00000489862 SAMD14Q8IZD0 417 aaPredicted RBP3.35□□□□□ -1.87
DEPDC1-204ENST00000489862 ABRAQ8N0Z2 381 aa3.35□□□□□ -1.87
DEPDC1-204ENST00000489862 SPC24Q8NBT2 197 aa3.35□□□□□ -1.87
DEPDC1-204ENST00000489862 ZNF540Q8NDQ6 660 aa3.35□□□□□ -1.87
DEPDC1-204ENST00000489862 ABHD11Q8NFV4 315 aa3.35□□□□□ -1.87
DEPDC1-204ENST00000489862 ETNPPLQ8TBG4 499 aa3.35□□□□□ -1.87
DEPDC1-204ENST00000489862 SCFD2Q8WU76 684 aa3.35□□□□□ -1.87
DEPDC1-204ENST00000489862 RSC1A1Q92681 617 aa3.35□□□□□ -1.87
DEPDC1-204ENST00000489862 GRAMD1AQ96CP6 724 aa3.35□□□□□ -1.87
DEPDC1-204ENST00000489862 DAZAP1Q96EP5 407 aaKnown RBP3.35□□□□□ -1.87
DEPDC1-204ENST00000489862 RITA1Q96K30 269 aa3.35□□□□□ -1.87
DEPDC1-204ENST00000489862 PPP1R10Q96QC0 940 aaKnown RBP3.35□□□□□ -1.87
DEPDC1-204ENST00000489862 GCNAQ96QF7 691 aa3.35□□□□□ -1.87
DEPDC1-204ENST00000489862 THAP7Q9BT49 309 aaPredicted RBP3.35□□□□□ -1.87
DEPDC1-204ENST00000489862 DPCDQ9BVM2 203 aaPredicted RBP3.35□□□□□ -1.87
DEPDC1-204ENST00000489862 APOL6Q9BWW8 343 aa3.35□□□□□ -1.87
DEPDC1-204ENST00000489862 SPRTNQ9H040 489 aaPredicted RBP3.35□□□□□ -1.87
DEPDC1-204ENST00000489862 POLR1BQ9H9Y6 1135 aa3.35□□□□□ -1.87
DEPDC1-204ENST00000489862 AKAP7Q9P0M2 348 aaPredicted RBP3.35□□□□□ -1.87
DEPDC1-204ENST00000489862 RASAL2Q9UJF2 1139 aa3.35□□□□□ -1.87
DEPDC1-204ENST00000489862 PADI1Q9ULC6 663 aa3.35□□□□□ -1.87
DEPDC1-204ENST00000489862 GABRQQ9UN88 632 aa3.35□□□□□ -1.87
DEPDC1-204ENST00000489862 COG5Q9UP83 839 aa3.35□□□□□ -1.87
DEPDC1-204ENST00000489862 PTRH2Q9Y3E5 179 aaKnown RBP3.35□□□□□ -1.87
DEPDC1-204ENST00000489862 ADAM18Q9Y3Q7 739 aa3.35□□□□□ -1.87
DEPDC1-204ENST00000489862 PCDHB7Q9Y5E2 793 aa3.35□□□□□ -1.87
DEPDC1-204ENST00000489862 SNX14Q9Y5W7 946 aa3.35□□□□□ -1.87
DEPDC1-204ENST00000489862 LYVE1Q9Y5Y7 322 aa3.35□□□□□ -1.87
DEPDC1-204ENST00000489862 PLCH2O75038 1416 aa3.35□□□□□ -1.87
DEPDC1-204ENST00000489862 VPS8Q8N3P4 1428 aa3.35□□□□□ -1.87
DEPDC1-204ENST00000489862 GPATCH8Q9UKJ3 1502 aaKnown RBP3.35□□□□□ -1.87
DEPDC1-204ENST00000489862 ZNF521Q96K83 1311 aa3.34□□□□□ -1.87
DEPDC1-204ENST00000489862 FRMD3A2A2Y4 597 aa3.34□□□□□ -1.87
DEPDC1-204ENST00000489862 AGAP5A6NIR3 686 aa3.34□□□□□ -1.87
DEPDC1-204ENST00000489862 KCNU1A8MYU2 1149 aa3.34□□□□□ -1.87
DEPDC1-204ENST00000489862 TMEM232C9JQI7 657 aa3.34□□□□□ -1.87
DEPDC1-204ENST00000489862 M0QZQ0 153 aa3.34□□□□□ -1.87
DEPDC1-204ENST00000489862 AP4M1O00189 453 aa3.34□□□□□ -1.87
DEPDC1-204ENST00000489862 SCAMP1O15126 338 aa3.34□□□□□ -1.87
DEPDC1-204ENST00000489862 SPRY1O43609 319 aaPredicted RBP3.34□□□□□ -1.87
DEPDC1-204ENST00000489862 KERAO60938 352 aa3.34□□□□□ -1.87
DEPDC1-204ENST00000489862 STAM2O75886 525 aa3.34□□□□□ -1.87
DEPDC1-204ENST00000489862 TJP3O95049 919 aa3.34□□□□□ -1.87
DEPDC1-204ENST00000489862 METTL18O95568 372 aa3.34□□□□□ -1.87
DEPDC1-204ENST00000489862 TPOP07202 933 aa3.34□□□□□ -1.87
DEPDC1-204ENST00000489862 HMOX1P09601 288 aa3.34□□□□□ -1.87
DEPDC1-204ENST00000489862 DLDP09622 509 aaKnown RBP3.34□□□□□ -1.87
DEPDC1-204ENST00000489862 CYP2C9P11712 490 aa3.34□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 94 ms