RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 ADRA1AP35348 466 aa18.15■□□□□ 0.5
VIM-206ENST00000487938 ART3Q13508 389 aa18.15■□□□□ 0.5
VIM-206ENST00000487938 CEACAM7Q14002 265 aa18.15■□□□□ 0.5
VIM-206ENST00000487938 FLOT2Q14254 428 aa18.15■□□□□ 0.5
VIM-206ENST00000487938 ZNF789Q5FWF6 425 aa18.15■□□□□ 0.5
VIM-206ENST00000487938 PIGGQ5H8A4 983 aa18.15■□□□□ 0.5
VIM-206ENST00000487938 RASIP1Q5U651 963 aa18.15■□□□□ 0.5
VIM-206ENST00000487938 PAXIP1Q6ZW49 1069 aaPredicted RBP18.15■□□□□ 0.5
VIM-206ENST00000487938 KLHDC8BQ8IXV7 354 aa18.15■□□□□ 0.5
VIM-206ENST00000487938 PQLC1Q8N2U9 271 aa18.15■□□□□ 0.5
VIM-206ENST00000487938 C2orf69Q8N8R5 385 aa18.15■□□□□ 0.5
VIM-206ENST00000487938 ICA1LQ8NDH6 482 aa18.15■□□□□ 0.5
VIM-206ENST00000487938 OR10T2Q8NGX3 314 aa18.15■□□□□ 0.5
VIM-206ENST00000487938 CASP10Q92851 521 aa18.15■□□□□ 0.5
VIM-206ENST00000487938 POMKQ9H5K3 350 aa18.15■□□□□ 0.5
VIM-206ENST00000487938 CYP4F12Q9HCS2 524 aa18.15■□□□□ 0.5
VIM-206ENST00000487938 GTSE1Q9NYZ3 720 aa18.15■□□□□ 0.5
VIM-206ENST00000487938 PSMD13Q9UNM6 376 aa18.15■□□□□ 0.5
VIM-206ENST00000487938 DTNAQ9Y4J8 743 aa18.15■□□□□ 0.5
VIM-206ENST00000487938 COPG1Q9Y678 874 aaKnown RBP18.15■□□□□ 0.5
VIM-206ENST00000487938 IRAK2O43187 625 aa18.14■□□□□ 0.49
VIM-206ENST00000487938 CHRNA1P02708 482 aa18.14■□□□□ 0.49
VIM-206ENST00000487938 TCN1P20061 433 aaPredicted RBP18.14■□□□□ 0.49
VIM-206ENST00000487938 GEMP55040 296 aa18.14■□□□□ 0.49
VIM-206ENST00000487938 CSHL1Q14406 222 aa18.14■□□□□ 0.49
VIM-206ENST00000487938 RBM20Q5T481 1227 aaKnown RBP18.14■□□□□ 0.49
VIM-206ENST00000487938 FAM219BQ5XKK7 198 aa18.14■□□□□ 0.49
VIM-206ENST00000487938 BTBD8Q5XKL5 378 aa18.14■□□□□ 0.49
VIM-206ENST00000487938 METTL23Q86XA0 190 aa18.14■□□□□ 0.49
VIM-206ENST00000487938 MRGPRX2Q96LB1 330 aa18.14■□□□□ 0.49
VIM-206ENST00000487938 ACBD6Q9BR61 282 aa18.14■□□□□ 0.49
VIM-206ENST00000487938 WDR41Q9HAD4 459 aa18.14■□□□□ 0.49
VIM-206ENST00000487938 ZBTB26Q9HCK0 441 aa18.14■□□□□ 0.49
VIM-206ENST00000487938 TRPV2Q9Y5S1 764 aa18.14■□□□□ 0.49
VIM-206ENST00000487938 SLCO1B7G3V0H7 640 aa18.14■□□□□ 0.49
VIM-206ENST00000487938 IGLV3-25P01717 112 aa18.14■□□□□ 0.49
VIM-206ENST00000487938 RPL9P32969 192 aaKnown RBP18.14■□□□□ 0.49
VIM-206ENST00000487938 CD151P48509 253 aa18.14■□□□□ 0.49
VIM-206ENST00000487938 SLC12A2P55011 1212 aa18.14■□□□□ 0.49
VIM-206ENST00000487938 XIAPP98170 497 aa18.14■□□□□ 0.49
VIM-206ENST00000487938 ZNF33AQ06730 810 aa18.14■□□□□ 0.49
VIM-206ENST00000487938 PDK3Q15120 406 aa18.14■□□□□ 0.49
VIM-206ENST00000487938 OGFRL1Q5TC84 451 aaPredicted RBP18.14■□□□□ 0.49
VIM-206ENST00000487938 TAF2Q6P1X5 1199 aa18.14■□□□□ 0.49
VIM-206ENST00000487938 POTEHQ6S545 545 aa18.14■□□□□ 0.49
VIM-206ENST00000487938 ISLR2Q6UXK2 745 aa18.14■□□□□ 0.49
VIM-206ENST00000487938 TRIM67Q6ZTA4 783 aa18.14■□□□□ 0.49
VIM-206ENST00000487938 C14orf80Q86SX3 495 aa18.14■□□□□ 0.49
VIM-206ENST00000487938 FAM156AQ8NDB6 213 aa18.14■□□□□ 0.49
VIM-206ENST00000487938 TMA16Q96EY4 203 aaKnown RBP18.14■□□□□ 0.49
VIM-206ENST00000487938 CCDC28BQ9BUN5 200 aa18.14■□□□□ 0.49
VIM-206ENST00000487938 FAM192AQ9GZU8 254 aa18.14■□□□□ 0.49
VIM-206ENST00000487938 MRPL46Q9H2W6 279 aaKnown RBP18.14■□□□□ 0.49
VIM-206ENST00000487938 AGO3Q9H9G7 860 aaKnown RBP18.14■□□□□ 0.49
VIM-206ENST00000487938 FBXO5Q9UKT4 447 aa18.14■□□□□ 0.49
VIM-206ENST00000487938 F8W810 466 aa18.13■□□□□ 0.49
VIM-206ENST00000487938 HOXC8P31273 242 aa18.13■□□□□ 0.49
VIM-206ENST00000487938 HK2P52789 917 aa18.13■□□□□ 0.49
VIM-206ENST00000487938 EIF4EBP2Q13542 120 aaPredicted RBP18.13■□□□□ 0.49
VIM-206ENST00000487938 ST13P4Q8IZP2 240 aaPredicted RBP18.13■□□□□ 0.49
VIM-206ENST00000487938 GALNT15Q8N3T1 639 aa18.13■□□□□ 0.49
VIM-206ENST00000487938 C2CD4AQ8NCU7 369 aaPredicted RBP18.13■□□□□ 0.49
VIM-206ENST00000487938 BHLHE22Q8NFJ8 381 aaPredicted RBP18.13■□□□□ 0.49
VIM-206ENST00000487938 HAPLN3Q96S86 360 aa18.13■□□□□ 0.49
VIM-206ENST00000487938 UBE2OQ9C0C9 1292 aaKnown RBP18.13■□□□□ 0.49
VIM-206ENST00000487938 CATSPERBQ9H7T0 1116 aa18.13■□□□□ 0.49
VIM-206ENST00000487938 COPS7BQ9H9Q2 264 aaPredicted RBP18.13■□□□□ 0.49
VIM-206ENST00000487938 EFCAB1Q9HAE3 211 aa18.13■□□□□ 0.49
VIM-206ENST00000487938 ENTPD7Q9NQZ7 604 aa18.13■□□□□ 0.49
VIM-206ENST00000487938 TREX1Q9NSU2 369 aa18.13■□□□□ 0.49
VIM-206ENST00000487938 MYLKQ15746 1914 aa18.13■□□□□ 0.49
VIM-206ENST00000487938 CELF2O95319 508 aaKnown RBP18.12■□□□□ 0.49
VIM-206ENST00000487938 ARTNQ5T4W7 220 aa18.12■□□□□ 0.49
VIM-206ENST00000487938 GDF6Q6KF10 455 aaPredicted RBP18.12■□□□□ 0.49
VIM-206ENST00000487938 NEPROQ6NW34 567 aa18.12■□□□□ 0.49
VIM-206ENST00000487938 LCA5Q86VQ0 697 aa18.12■□□□□ 0.49
VIM-206ENST00000487938 PGAM4Q8N0Y7 254 aa18.12■□□□□ 0.49
VIM-206ENST00000487938 DCUN1D1Q96GG9 259 aa18.12■□□□□ 0.49
VIM-206ENST00000487938 MRPL57Q9BQC6 102 aaKnown RBP18.12■□□□□ 0.49
VIM-206ENST00000487938 GIT1Q9Y2X7 761 aa18.12■□□□□ 0.49
VIM-206ENST00000487938 TTC3P53804 2025 aa18.12■□□□□ 0.49
VIM-206ENST00000487938 TCAF2A6NFQ2 919 aa18.12■□□□□ 0.49
VIM-206ENST00000487938 SDHDO14521 159 aa18.12■□□□□ 0.49
VIM-206ENST00000487938 PEX1O43933 1283 aa18.12■□□□□ 0.49
VIM-206ENST00000487938 KCNA5P22460 613 aa18.12■□□□□ 0.49
VIM-206ENST00000487938 CCR1P32246 355 aa18.12■□□□□ 0.49
VIM-206ENST00000487938 CYP2C18P33260 490 aa18.12■□□□□ 0.49
VIM-206ENST00000487938 GRIK1P39086 918 aa18.12■□□□□ 0.49
VIM-206ENST00000487938 GRIA2P42262 883 aa18.12■□□□□ 0.49
VIM-206ENST00000487938 PLK1P53350 603 aa18.12■□□□□ 0.49
VIM-206ENST00000487938 LIN52Q52LA3 116 aa18.12■□□□□ 0.49
VIM-206ENST00000487938 MAP3K21Q5TCX8 1036 aa18.12■□□□□ 0.49
VIM-206ENST00000487938 CXCL17Q6UXB2 119 aa18.12■□□□□ 0.49
VIM-206ENST00000487938 RANBP10Q6VN20 620 aa18.12■□□□□ 0.49
VIM-206ENST00000487938 GK5Q6ZS86 529 aa18.12■□□□□ 0.49
VIM-206ENST00000487938 SETD3Q86TU7 594 aaPredicted RBP18.12■□□□□ 0.49
VIM-206ENST00000487938 PDCD6IPQ8WUM4 868 aaKnown RBP18.12■□□□□ 0.49
VIM-206ENST00000487938 LRGUKQ96M69 825 aa18.12■□□□□ 0.49
VIM-206ENST00000487938 OLFM1Q99784 485 aa18.12■□□□□ 0.49
VIM-206ENST00000487938 TNFRSF12AQ9NP84 129 aa18.12■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms