RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 DNAAF3Q8N9W5 541 aa14.39□□□□□ -0.11
CUX1-209ENST00000487284 OR7D4Q8NG98 312 aa14.39□□□□□ -0.11
CUX1-209ENST00000487284 MDM1Q8TC05 714 aa14.39□□□□□ -0.11
CUX1-209ENST00000487284 TTC17Q96AE7 1141 aa14.39□□□□□ -0.11
CUX1-209ENST00000487284 MRRFQ96E11 262 aaKnown RBP14.39□□□□□ -0.11
CUX1-209ENST00000487284 TBL1YQ9BQ87 522 aa14.39□□□□□ -0.11
CUX1-209ENST00000487284 APOL2Q9BQE5 337 aa14.39□□□□□ -0.11
CUX1-209ENST00000487284 FAM83CQ9BQN1 747 aa14.39□□□□□ -0.11
CUX1-209ENST00000487284 PHF7Q9BWX1 381 aaPredicted RBP14.39□□□□□ -0.11
CUX1-209ENST00000487284 IL22Q9GZX6 179 aa14.39□□□□□ -0.11
CUX1-209ENST00000487284 NT5MQ9NPB1 228 aa14.39□□□□□ -0.11
CUX1-209ENST00000487284 SMYD2Q9NRG4 433 aa14.39□□□□□ -0.11
CUX1-209ENST00000487284 SAMD15Q9P1V8 674 aa14.39□□□□□ -0.11
CUX1-209ENST00000487284 ZNF180Q9UJW8 692 aa14.39□□□□□ -0.11
CUX1-209ENST00000487284 NUMBLQ9Y6R0 609 aa14.39□□□□□ -0.11
CUX1-209ENST00000487284 COL4A3Q01955 1670 aa14.38□□□□□ -0.11
CUX1-209ENST00000487284 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP14.38□□□□□ -0.11
CUX1-209ENST00000487284 TMEM120BA0PK00 339 aa14.38□□□□□ -0.11
CUX1-209ENST00000487284 CXorf49A8MYA2 514 aaPredicted RBP14.38□□□□□ -0.11
CUX1-209ENST00000487284 CYBBP04839 570 aa14.38□□□□□ -0.11
CUX1-209ENST00000487284 CYP17A1P05093 508 aa14.38□□□□□ -0.11
CUX1-209ENST00000487284 POLBP06746 335 aa14.38□□□□□ -0.11
CUX1-209ENST00000487284 RHOCP08134 193 aa14.38□□□□□ -0.11
CUX1-209ENST00000487284 INHBAP08476 426 aa14.38□□□□□ -0.11
CUX1-209ENST00000487284 BRAFP15056 766 aa14.38□□□□□ -0.11
CUX1-209ENST00000487284 CHN1P15882 459 aa14.38□□□□□ -0.11
CUX1-209ENST00000487284 KRT15P19012 456 aa14.38□□□□□ -0.11
CUX1-209ENST00000487284 LSP1P33241 339 aa14.38□□□□□ -0.11
CUX1-209ENST00000487284 ZNF177Q13360 481 aaPredicted RBP14.38□□□□□ -0.11
CUX1-209ENST00000487284 FRG1Q14331 258 aaKnown RBP14.38□□□□□ -0.11
CUX1-209ENST00000487284 LBRQ14739 615 aaKnown RBP14.38□□□□□ -0.11
CUX1-209ENST00000487284 ALG1LQ6GMV1 187 aa14.38□□□□□ -0.11
CUX1-209ENST00000487284 DENND5AQ6IQ26 1287 aa14.38□□□□□ -0.11
CUX1-209ENST00000487284 CXorf57Q6NSI4 855 aaKnown RBP14.38□□□□□ -0.11
CUX1-209ENST00000487284 ZNF449Q6P9G9 518 aa14.38□□□□□ -0.11
CUX1-209ENST00000487284 ZNF783Q6ZMS7 281 aa14.38□□□□□ -0.11
CUX1-209ENST00000487284 TMEM135Q86UB9 458 aa14.38□□□□□ -0.11
CUX1-209ENST00000487284 SLC26A11Q86WA9 606 aa14.38□□□□□ -0.11
CUX1-209ENST00000487284 CCDC117Q8IWD4 279 aaPredicted RBP14.38□□□□□ -0.11
CUX1-209ENST00000487284 PGBD5Q8N414 524 aa14.38□□□□□ -0.11
CUX1-209ENST00000487284 CARNMT1Q8N4J0 409 aa14.38□□□□□ -0.11
CUX1-209ENST00000487284 IPMKQ8NFU5 416 aa14.38□□□□□ -0.11
CUX1-209ENST00000487284 WFDC5Q8TCV5 224 aa14.38□□□□□ -0.11
CUX1-209ENST00000487284 TADA1Q96BN2 335 aa14.38□□□□□ -0.11
CUX1-209ENST00000487284 FICDQ9BVA6 458 aa14.38□□□□□ -0.11
CUX1-209ENST00000487284 BBS2Q9BXC9 721 aa14.38□□□□□ -0.11
CUX1-209ENST00000487284 ACE2Q9BYF1 805 aaPredicted RBP14.38□□□□□ -0.11
CUX1-209ENST00000487284 TRABDQ9H4I3 376 aa14.38□□□□□ -0.11
CUX1-209ENST00000487284 EBF3Q9H4W6 596 aa14.38□□□□□ -0.11
CUX1-209ENST00000487284 VPS45Q9NRW7 570 aa14.38□□□□□ -0.11
CUX1-209ENST00000487284 THG1LQ9NWX6 298 aaKnown RBP14.38□□□□□ -0.11
CUX1-209ENST00000487284 CLEC4EQ9ULY5 219 aa14.38□□□□□ -0.11
CUX1-209ENST00000487284 IKBKGQ9Y6K9 419 aa14.38□□□□□ -0.11
CUX1-209ENST00000487284 FAM237BA0A1B0GVD1 139 aa14.37□□□□□ -0.11
CUX1-209ENST00000487284 MAGEB16A2A368 324 aa14.37□□□□□ -0.11
CUX1-209ENST00000487284 ANHXE9PGG2 379 aa14.37□□□□□ -0.11
CUX1-209ENST00000487284 NEDD8-MDP1E9PL57 170 aa14.37□□□□□ -0.11
CUX1-209ENST00000487284 KDELR3O43731 214 aa14.37□□□□□ -0.11
CUX1-209ENST00000487284 USP1O94782 785 aa14.37□□□□□ -0.11
CUX1-209ENST00000487284 LUC7L3O95232 432 aaKnown RBP14.37□□□□□ -0.11
CUX1-209ENST00000487284 PENKP01210 267 aaPredicted RBP14.37□□□□□ -0.11
CUX1-209ENST00000487284 MMP2P08253 660 aa14.37□□□□□ -0.11
CUX1-209ENST00000487284 IL9P15248 144 aa14.37□□□□□ -0.11
CUX1-209ENST00000487284 ETFBP38117 255 aa14.37□□□□□ -0.11
CUX1-209ENST00000487284 NIPAL4Q0D2K0 466 aa14.37□□□□□ -0.11
CUX1-209ENST00000487284 NAB1Q13506 487 aa14.37□□□□□ -0.11
CUX1-209ENST00000487284 DHCR24Q15392 516 aa14.37□□□□□ -0.11
CUX1-209ENST00000487284 MPP7Q5T2T1 576 aa14.37□□□□□ -0.11
CUX1-209ENST00000487284 CERCAMQ5T4B2 595 aa14.37□□□□□ -0.11
CUX1-209ENST00000487284 RNF43Q68DV7 783 aa14.37□□□□□ -0.11
CUX1-209ENST00000487284 RANBP10Q6VN20 620 aa14.37□□□□□ -0.11
CUX1-209ENST00000487284 MARK2Q7KZI7 788 aaKnown RBP14.37□□□□□ -0.11
CUX1-209ENST00000487284 CTAGE3PQ8IX95 158 aa14.37□□□□□ -0.11
CUX1-209ENST00000487284 YAF2Q8IY57 180 aa14.37□□□□□ -0.11
CUX1-209ENST00000487284 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP14.37□□□□□ -0.11
CUX1-209ENST00000487284 PPM1NQ8N819 430 aa14.37□□□□□ -0.11
CUX1-209ENST00000487284 ARRDC2Q8TBH0 407 aa14.37□□□□□ -0.11
CUX1-209ENST00000487284 ATXN2LQ8WWM7 1075 aaKnown RBP14.37□□□□□ -0.11
CUX1-209ENST00000487284 MRGPRX2Q96LB1 330 aa14.37□□□□□ -0.11
CUX1-209ENST00000487284 ARNT2Q9HBZ2 717 aa14.37□□□□□ -0.11
CUX1-209ENST00000487284 SSU72Q9NP77 194 aaKnown RBP14.37□□□□□ -0.11
CUX1-209ENST00000487284 HPS4Q9NQG7 708 aa14.37□□□□□ -0.11
CUX1-209ENST00000487284 MARK1Q9P0L2 795 aa14.37□□□□□ -0.11
CUX1-209ENST00000487284 SOX13Q9UN79 622 aa14.37□□□□□ -0.11
CUX1-209ENST00000487284 RPS6KL1Q9Y6S9 549 aa14.37□□□□□ -0.11
CUX1-209ENST00000487284 IQANK1A0A1B0GTG1 560 aa14.36□□□□□ -0.11
CUX1-209ENST00000487284 OTOL1A6NHN0 477 aaPredicted RBP14.36□□□□□ -0.11
CUX1-209ENST00000487284 H0Y626 953 aa14.36□□□□□ -0.11
CUX1-209ENST00000487284 PMPCBO75439 489 aa14.36□□□□□ -0.11
CUX1-209ENST00000487284 FAM155BO75949 473 aa14.36□□□□□ -0.11
CUX1-209ENST00000487284 NFATC1O95644 943 aa14.36□□□□□ -0.11
CUX1-209ENST00000487284 TYRP14679 529 aa14.36□□□□□ -0.11
CUX1-209ENST00000487284 GDI1P31150 447 aa14.36□□□□□ -0.11
CUX1-209ENST00000487284 NUMBP49757 651 aa14.36□□□□□ -0.11
CUX1-209ENST00000487284 SLC18A1P54219 525 aa14.36□□□□□ -0.11
CUX1-209ENST00000487284 OXCT1P55809 520 aa14.36□□□□□ -0.11
CUX1-209ENST00000487284 WNT3AP56704 352 aa14.36□□□□□ -0.11
CUX1-209ENST00000487284 MAXP61244 160 aa14.36□□□□□ -0.11
CUX1-209ENST00000487284 DSC2Q02487 901 aa14.36□□□□□ -0.11
CUX1-209ENST00000487284 CDH18Q13634 790 aa14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms