RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 RSPH9Q9H1X1 276 aaPredicted RBP8.17□□□□□ -1.1
USP40-216ENST00000485943 ATP13A3Q9H7F0 1226 aa8.17□□□□□ -1.1
USP40-216ENST00000485943 PCDH18Q9HCL0 1135 aa8.17□□□□□ -1.1
USP40-216ENST00000485943 ITM2CQ9NQX7 267 aa8.17□□□□□ -1.1
USP40-216ENST00000485943 SEMA4GQ9NTN9 838 aa8.17□□□□□ -1.1
USP40-216ENST00000485943 PGPEP1Q9NXJ5 209 aa8.17□□□□□ -1.1
USP40-216ENST00000485943 CWC15Q9P013 229 aaKnown RBP8.17□□□□□ -1.1
USP40-216ENST00000485943 IPO11Q9UI26 975 aaKnown RBP8.17□□□□□ -1.1
USP40-216ENST00000485943 AMFRQ9UKV5 643 aa8.17□□□□□ -1.1
USP40-216ENST00000485943 FZD4Q9ULV1 537 aa8.17□□□□□ -1.1
USP40-216ENST00000485943 HS3ST2Q9Y278 367 aa8.17□□□□□ -1.1
USP40-216ENST00000485943 A0A0A6YYK5 440 aaPredicted RBP8.16□□□□□ -1.1
USP40-216ENST00000485943 LOC105378220A0A1B0GUY1 285 aaPredicted RBP8.16□□□□□ -1.1
USP40-216ENST00000485943 WASH4PA8MWX3 477 aa8.16□□□□□ -1.1
USP40-216ENST00000485943 K7ERQ8 282 aa8.16□□□□□ -1.1
USP40-216ENST00000485943 ARHGAP6O43182 974 aa8.16□□□□□ -1.1
USP40-216ENST00000485943 GDF9O60383 454 aa8.16□□□□□ -1.1
USP40-216ENST00000485943 LEFTY1O75610 366 aa8.16□□□□□ -1.1
USP40-216ENST00000485943 STK10O94804 968 aaKnown RBP8.16□□□□□ -1.1
USP40-216ENST00000485943 ZRANB2O95218 330 aaKnown RBP eCLIP8.16□□□□□ -1.1
USP40-216ENST00000485943 GSRP00390 522 aa8.16□□□□□ -1.1
USP40-216ENST00000485943 UGT2B4P06133 528 aa8.16□□□□□ -1.1
USP40-216ENST00000485943 CCDC175P0C221 793 aa8.16□□□□□ -1.1
USP40-216ENST00000485943 VAV1P15498 845 aa8.16□□□□□ -1.1
USP40-216ENST00000485943 COMTP21964 271 aa8.16□□□□□ -1.1
USP40-216ENST00000485943 GLDCP23378 1020 aa8.16□□□□□ -1.1
USP40-216ENST00000485943 HSPA9P38646 679 aaKnown RBP8.16□□□□□ -1.1
USP40-216ENST00000485943 SCNN1BP51168 640 aa8.16□□□□□ -1.1
USP40-216ENST00000485943 COPAP53621 1224 aa8.16□□□□□ -1.1
USP40-216ENST00000485943 POLR2LP62875 67 aaKnown RBP8.16□□□□□ -1.1
USP40-216ENST00000485943 ARHGAP8P85298 464 aa8.16□□□□□ -1.1
USP40-216ENST00000485943 BCL2L1Q07817 233 aa8.16□□□□□ -1.1
USP40-216ENST00000485943 ZNF252P-AS1Q0IIN9 211 aa8.16□□□□□ -1.1
USP40-216ENST00000485943 AP1B1Q10567 949 aa8.16□□□□□ -1.1
USP40-216ENST00000485943 SERINC3Q13530 473 aa8.16□□□□□ -1.1
USP40-216ENST00000485943 ENPP2Q13822 863 aa8.16□□□□□ -1.1
USP40-216ENST00000485943 STAT4Q14765 748 aa8.16□□□□□ -1.1
USP40-216ENST00000485943 CA9Q16790 459 aa8.16□□□□□ -1.1
USP40-216ENST00000485943 SETMARQ53H47 684 aaPredicted RBP8.16□□□□□ -1.1
USP40-216ENST00000485943 INO80DQ53TQ3 878 aaPredicted RBP8.16□□□□□ -1.1
USP40-216ENST00000485943 C9orf64Q5T6V5 341 aa8.16□□□□□ -1.1
USP40-216ENST00000485943 SEL1L2Q5TEA6 688 aa8.16□□□□□ -1.1
USP40-216ENST00000485943 MANEALQ5VSG8 457 aa8.16□□□□□ -1.1
USP40-216ENST00000485943 RNF43Q68DV7 783 aa8.16□□□□□ -1.1
USP40-216ENST00000485943 KIAA0895LQ68EN5 471 aa8.16□□□□□ -1.1
USP40-216ENST00000485943 CCDC70Q6NSX1 233 aa8.16□□□□□ -1.1
USP40-216ENST00000485943 CAPN12Q6ZSI9 719 aa8.16□□□□□ -1.1
USP40-216ENST00000485943 ERN2Q76MJ5 926 aaKnown RBP8.16□□□□□ -1.1
USP40-216ENST00000485943 BNIPLQ7Z465 357 aa8.16□□□□□ -1.1
USP40-216ENST00000485943 TTC7BQ86TV6 843 aa8.16□□□□□ -1.1
USP40-216ENST00000485943 NLRP14Q86W24 1093 aa8.16□□□□□ -1.1
USP40-216ENST00000485943 LRRC49Q8IUZ0 686 aa8.16□□□□□ -1.1
USP40-216ENST00000485943 ABCA7Q8IZY2 2146 aa8.16□□□□□ -1.1
USP40-216ENST00000485943 UMODL1-AS1Q8N2C9 162 aa8.16□□□□□ -1.1
USP40-216ENST00000485943 DCLK2Q8N568 766 aa8.16□□□□□ -1.1
USP40-216ENST00000485943 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP8.16□□□□□ -1.1
USP40-216ENST00000485943 ACRBPQ8NEB7 543 aa8.16□□□□□ -1.1
USP40-216ENST00000485943 CADM4Q8NFZ8 388 aa8.16□□□□□ -1.1
USP40-216ENST00000485943 OR2T34Q8NGX1 318 aa8.16□□□□□ -1.1
USP40-216ENST00000485943 OR6K2Q8NGY2 324 aa8.16□□□□□ -1.1
USP40-216ENST00000485943 SNIP1Q8TAD8 396 aaKnown RBP8.16□□□□□ -1.1
USP40-216ENST00000485943 CXorf40AQ8TE69 158 aa8.16□□□□□ -1.1
USP40-216ENST00000485943 P3H4Q92791 437 aa8.16□□□□□ -1.1
USP40-216ENST00000485943 PTPRN2Q92932 1015 aa8.16□□□□□ -1.1
USP40-216ENST00000485943 ISG20Q96AZ6 181 aaKnown RBP8.16□□□□□ -1.1
USP40-216ENST00000485943 HAUS1Q96CS2 278 aa8.16□□□□□ -1.1
USP40-216ENST00000485943 LRIG1Q96JA1 1093 aa8.16□□□□□ -1.1
USP40-216ENST00000485943 FEM1CQ96JP0 617 aa8.16□□□□□ -1.1
USP40-216ENST00000485943 ZC3H10Q96K80 434 aaKnown RBP8.16□□□□□ -1.1
USP40-216ENST00000485943 EXOC2Q96KP1 924 aa8.16□□□□□ -1.1
USP40-216ENST00000485943 MRGPRX3Q96LB0 322 aa8.16□□□□□ -1.1
USP40-216ENST00000485943 CSPG4P5Q96PW8 444 aa8.16□□□□□ -1.1
USP40-216ENST00000485943 PEBP4Q96S96 227 aa8.16□□□□□ -1.1
USP40-216ENST00000485943 EDEM2Q9BV94 578 aa8.16□□□□□ -1.1
USP40-216ENST00000485943 ACE2Q9BYF1 805 aaPredicted RBP8.16□□□□□ -1.1
USP40-216ENST00000485943 SLC39A8Q9C0K1 460 aa8.16□□□□□ -1.1
USP40-216ENST00000485943 PCED1AQ9H1Q7 454 aa8.16□□□□□ -1.1
USP40-216ENST00000485943 DUSP15Q9H1R2 295 aaPredicted RBP8.16□□□□□ -1.1
USP40-216ENST00000485943 NEUROG2Q9H2A3 272 aa8.16□□□□□ -1.1
USP40-216ENST00000485943 WSB2Q9NYS7 404 aaPredicted RBP8.16□□□□□ -1.1
USP40-216ENST00000485943 USP36Q9P275 1121 aaKnown RBP8.16□□□□□ -1.1
USP40-216ENST00000485943 EVLQ9UI08 416 aaPredicted RBP8.16□□□□□ -1.1
USP40-216ENST00000485943 EML5Q05BV3 1969 aa8.15□□□□□ -1.1
USP40-216ENST00000485943 NYNRINQ9P2P1 1898 aaKnown RBP8.15□□□□□ -1.1
USP40-216ENST00000485943 CXorf51AA0A1B0GTR3 108 aa8.15□□□□□ -1.1
USP40-216ENST00000485943 A0A1B0GTW7 788 aa8.15□□□□□ -1.1
USP40-216ENST00000485943 CCDC66A2RUB6 948 aa8.15□□□□□ -1.1
USP40-216ENST00000485943 GOLGA6CA6NDK9 693 aa8.15□□□□□ -1.1
USP40-216ENST00000485943 GOLGA6BA6NDN3 693 aa8.15□□□□□ -1.1
USP40-216ENST00000485943 BCAT2O15382 392 aaPredicted RBP8.15□□□□□ -1.1
USP40-216ENST00000485943 SLC7A4O43246 635 aa8.15□□□□□ -1.1
USP40-216ENST00000485943 MT-CO1P00395 513 aa8.15□□□□□ -1.1
USP40-216ENST00000485943 IL2RAP01589 272 aa8.15□□□□□ -1.1
USP40-216ENST00000485943 GOLGA6DP0CG33 693 aa8.15□□□□□ -1.1
USP40-216ENST00000485943 TDGF1P13385 188 aa8.15□□□□□ -1.1
USP40-216ENST00000485943 ITPKAP23677 461 aa8.15□□□□□ -1.1
USP40-216ENST00000485943 KDELR1P24390 212 aa8.15□□□□□ -1.1
USP40-216ENST00000485943 IL1R2P27930 398 aa8.15□□□□□ -1.1
USP40-216ENST00000485943 MAT2AP31153 395 aaKnown RBP8.15□□□□□ -1.1
USP40-216ENST00000485943 AKT2P31751 481 aa8.15□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms