RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 TBC1D7Q9P0N9 293 aa4.89□□□□□ -1.63
USP4-209ENST00000475873 ADAM21Q9UKJ8 722 aa4.89□□□□□ -1.63
USP4-209ENST00000475873 PCDHGB6Q9Y5F9 930 aa4.89□□□□□ -1.63
USP4-209ENST00000475873 CHD5Q8TDI0 1954 aa4.89□□□□□ -1.63
USP4-209ENST00000475873 ZANQ9Y493 2812 aa4.88□□□□□ -1.63
USP4-209ENST00000475873 A6NCN8 305 aa4.88□□□□□ -1.63
USP4-209ENST00000475873 YJEFN3A6XGL0 299 aa4.88□□□□□ -1.63
USP4-209ENST00000475873 B4DGG1 531 aa4.88□□□□□ -1.63
USP4-209ENST00000475873 E7ENQ6 273 aa4.88□□□□□ -1.63
USP4-209ENST00000475873 FPGTO14772 594 aa4.88□□□□□ -1.63
USP4-209ENST00000475873 KCNN4O15554 427 aa4.88□□□□□ -1.63
USP4-209ENST00000475873 SMAD6O43541 496 aaKnown RBP4.88□□□□□ -1.63
USP4-209ENST00000475873 NUDT21O43809 227 aaKnown RBP4.88□□□□□ -1.63
USP4-209ENST00000475873 BNIP3LO60238 219 aa4.88□□□□□ -1.63
USP4-209ENST00000475873 CREG1O75629 220 aa4.88□□□□□ -1.63
USP4-209ENST00000475873 GABBR2O75899 941 aa4.88□□□□□ -1.63
USP4-209ENST00000475873 LDHAP00338 332 aaKnown RBP4.88□□□□□ -1.63
USP4-209ENST00000475873 TRIM49P0CI25 452 aa4.88□□□□□ -1.63
USP4-209ENST00000475873 TRIM49CP0CI26 452 aa4.88□□□□□ -1.63
USP4-209ENST00000475873 DLATP10515 647 aaKnown RBP4.88□□□□□ -1.63
USP4-209ENST00000475873 ADRB3P13945 408 aa4.88□□□□□ -1.63
USP4-209ENST00000475873 FECHP22830 423 aa4.88□□□□□ -1.63
USP4-209ENST00000475873 SSTR2P30874 369 aa4.88□□□□□ -1.63
USP4-209ENST00000475873 CHRNA3P32297 505 aa4.88□□□□□ -1.63
USP4-209ENST00000475873 EIF4A3P38919 411 aaKnown RBP4.88□□□□□ -1.63
USP4-209ENST00000475873 ABL2P42684 1182 aa4.88□□□□□ -1.63
USP4-209ENST00000475873 ASPAP45381 313 aa4.88□□□□□ -1.63
USP4-209ENST00000475873 CASP4P49662 377 aa4.88□□□□□ -1.63
USP4-209ENST00000475873 VASPP50552 380 aaPredicted RBP4.88□□□□□ -1.63
USP4-209ENST00000475873 IRAK1P51617 712 aa4.88□□□□□ -1.63
USP4-209ENST00000475873 CCL11P51671 97 aa4.88□□□□□ -1.63
USP4-209ENST00000475873 RPS21P63220 83 aaKnown RBP4.88□□□□□ -1.63
USP4-209ENST00000475873 MC2RQ01718 297 aa4.88□□□□□ -1.63
USP4-209ENST00000475873 FOXM1Q08050 763 aa4.88□□□□□ -1.63
USP4-209ENST00000475873 IL10RAQ13651 578 aa4.88□□□□□ -1.63
USP4-209ENST00000475873 ELOCQ15369 112 aa4.88□□□□□ -1.63
USP4-209ENST00000475873 ANO6Q4KMQ2 910 aa4.88□□□□□ -1.63
USP4-209ENST00000475873 MS4A13Q5J8X5 152 aa4.88□□□□□ -1.63
USP4-209ENST00000475873 DCAF10Q5QP82 559 aa4.88□□□□□ -1.63
USP4-209ENST00000475873 RNF219Q5W0B1 726 aaPredicted RBP4.88□□□□□ -1.63
USP4-209ENST00000475873 PM20D1Q6GTS8 502 aa4.88□□□□□ -1.63
USP4-209ENST00000475873 KIAA1161Q6NSJ0 714 aa4.88□□□□□ -1.63
USP4-209ENST00000475873 KDELC2Q7Z4H8 507 aa4.88□□□□□ -1.63
USP4-209ENST00000475873 PIGZQ86VD9 579 aa4.88□□□□□ -1.63
USP4-209ENST00000475873 FAM186BQ8IYM0 893 aa4.88□□□□□ -1.63
USP4-209ENST00000475873 NXPE1Q8N323 547 aa4.88□□□□□ -1.63
USP4-209ENST00000475873 FSTL5Q8N475 847 aaPredicted RBP4.88□□□□□ -1.63
USP4-209ENST00000475873 ST6GALNAC3Q8NDV1 305 aa4.88□□□□□ -1.63
USP4-209ENST00000475873 FDCSPQ8NFU4 85 aa4.88□□□□□ -1.63
USP4-209ENST00000475873 OR6C4Q8NGE1 309 aa4.88□□□□□ -1.63
USP4-209ENST00000475873 OR4D9Q8NGE8 314 aa4.88□□□□□ -1.63
USP4-209ENST00000475873 GRIN3AQ8TCU5 1115 aa4.88□□□□□ -1.63
USP4-209ENST00000475873 PATE1Q8WXA2 126 aa4.88□□□□□ -1.63
USP4-209ENST00000475873 KCTD13Q8WZ19 329 aa4.88□□□□□ -1.63
USP4-209ENST00000475873 CYFIP2Q96F07 1278 aa4.88□□□□□ -1.63
USP4-209ENST00000475873 C14orf79Q96F83 325 aa4.88□□□□□ -1.63
USP4-209ENST00000475873 FCRL2Q96LA5 508 aaPredicted RBP4.88□□□□□ -1.63
USP4-209ENST00000475873 RBM15Q96T37 977 aaKnown RBP eCLIP4.88□□□□□ -1.63
USP4-209ENST00000475873 HDAC8Q9BY41 377 aa4.88□□□□□ -1.63
USP4-209ENST00000475873 ULBP1Q9BZM6 244 aa4.88□□□□□ -1.63
USP4-209ENST00000475873 TWSG1Q9GZX9 223 aa4.88□□□□□ -1.63
USP4-209ENST00000475873 AKIRIN1Q9H9L7 192 aaPredicted RBP4.88□□□□□ -1.63
USP4-209ENST00000475873 CBX8Q9HC52 389 aa4.88□□□□□ -1.63
USP4-209ENST00000475873 PDP2Q9P2J9 529 aa4.88□□□□□ -1.63
USP4-209ENST00000475873 DOLKQ9UPQ8 538 aa4.88□□□□□ -1.63
USP4-209ENST00000475873 CEP83Q9Y592 693 aa4.88□□□□□ -1.63
USP4-209ENST00000475873 OR51B4Q9Y5P0 310 aa4.88□□□□□ -1.63
USP4-209ENST00000475873 WASF2Q9Y6W5 498 aa4.88□□□□□ -1.63
USP4-209ENST00000475873 PIKFYVEQ9Y2I7 2098 aa4.88□□□□□ -1.63
USP4-209ENST00000475873 PIPSLA2A3N6 862 aa4.87□□□□□ -1.63
USP4-209ENST00000475873 ARGFXA6NJG6 315 aa4.87□□□□□ -1.63
USP4-209ENST00000475873 ZNF233A6NK53 670 aa4.87□□□□□ -1.63
USP4-209ENST00000475873 IRAK2O43187 625 aa4.87□□□□□ -1.63
USP4-209ENST00000475873 DPM1O60762 260 aa4.87□□□□□ -1.63
USP4-209ENST00000475873 TBCAO75347 108 aaKnown RBP4.87□□□□□ -1.63
USP4-209ENST00000475873 KATNA1O75449 491 aa4.87□□□□□ -1.63
USP4-209ENST00000475873 ZNF821O75541 412 aaPredicted RBP4.87□□□□□ -1.63
USP4-209ENST00000475873 KIF20AO95235 890 aa4.87□□□□□ -1.63
USP4-209ENST00000475873 STSP08842 583 aa4.87□□□□□ -1.63
USP4-209ENST00000475873 ALPIP09923 528 aa4.87□□□□□ -1.63
USP4-209ENST00000475873 SRCP12931 536 aa4.87□□□□□ -1.63
USP4-209ENST00000475873 VARSP26640 1264 aaKnown RBP4.87□□□□□ -1.63
USP4-209ENST00000475873 PSMA5P28066 241 aa4.87□□□□□ -1.63
USP4-209ENST00000475873 ALDH4A1P30038 563 aa4.87□□□□□ -1.63
USP4-209ENST00000475873 CSTF2P33240 577 aaKnown RBP eCLIP4.87□□□□□ -1.63
USP4-209ENST00000475873 PRPHP41219 470 aa4.87□□□□□ -1.63
USP4-209ENST00000475873 PTGIRP43119 386 aa4.87□□□□□ -1.63
USP4-209ENST00000475873 PLK1P53350 603 aa4.87□□□□□ -1.63
USP4-209ENST00000475873 PER3P56645 1201 aa4.87□□□□□ -1.63
USP4-209ENST00000475873 RAB15P59190 212 aa4.87□□□□□ -1.63
USP4-209ENST00000475873 RPS18P62269 152 aaKnown RBP4.87□□□□□ -1.63
USP4-209ENST00000475873 TLE4Q04727 773 aa4.87□□□□□ -1.63
USP4-209ENST00000475873 CYP24A1Q07973 514 aa4.87□□□□□ -1.63
USP4-209ENST00000475873 TRA2AQ13595 282 aaKnown RBP eCLIP4.87□□□□□ -1.63
USP4-209ENST00000475873 ARHGEF7Q14155 803 aa4.87□□□□□ -1.63
USP4-209ENST00000475873 MAP7Q14244 749 aa4.87□□□□□ -1.63
USP4-209ENST00000475873 PSMD6Q15008 389 aa4.87□□□□□ -1.63
USP4-209ENST00000475873 CHRNA6Q15825 494 aa4.87□□□□□ -1.63
USP4-209ENST00000475873 ZNF699Q32M78 642 aa4.87□□□□□ -1.63
USP4-209ENST00000475873 ACCSLQ4AC99 568 aa4.87□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms