RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 OTCP00480 354 aa13.42□□□□□ -0.26
COL6A3-209ENST00000472056 SLC6A2P23975 617 aa13.42□□□□□ -0.26
COL6A3-209ENST00000472056 MYBPC3Q14896 1274 aa13.42□□□□□ -0.26
COL6A3-209ENST00000472056 PLEKHG6Q3KR16 790 aa13.42□□□□□ -0.26
COL6A3-209ENST00000472056 CNSTQ6PJW8 725 aa13.42□□□□□ -0.26
COL6A3-209ENST00000472056 BPIFB6Q8NFQ5 453 aa13.42□□□□□ -0.26
COL6A3-209ENST00000472056 TRMT13Q9NUP7 481 aaKnown RBP13.42□□□□□ -0.26
COL6A3-209ENST00000472056 ARHGAP20Q9P2F6 1191 aa13.42□□□□□ -0.26
COL6A3-209ENST00000472056 CFL2Q9Y281 166 aa13.42□□□□□ -0.26
COL6A3-209ENST00000472056 USP31Q70CQ4 1352 aa13.42□□□□□ -0.26
COL6A3-209ENST00000472056 BIKQ13323 160 aa13.42□□□□□ -0.26
COL6A3-209ENST00000472056 PPP1R15BQ5SWA1 713 aa13.42□□□□□ -0.26
COL6A3-209ENST00000472056 OAFQ86UD1 273 aa13.42□□□□□ -0.26
COL6A3-209ENST00000472056 POMGNT2Q8NAT1 580 aa13.42□□□□□ -0.26
COL6A3-209ENST00000472056 HEXDCQ8WVB3 486 aa13.42□□□□□ -0.26
COL6A3-209ENST00000472056 TRIT1Q9H3H1 467 aaKnown RBP13.42□□□□□ -0.26
COL6A3-209ENST00000472056 SP140LQ9H930 580 aa13.42□□□□□ -0.26
COL6A3-209ENST00000472056 DUSP10Q9Y6W6 482 aa13.42□□□□□ -0.26
COL6A3-209ENST00000472056 LMTK2Q8IWU2 1503 aa13.42□□□□□ -0.26
COL6A3-209ENST00000472056 GATBO75879 557 aaKnown RBP13.42□□□□□ -0.26
COL6A3-209ENST00000472056 ICAM1P05362 532 aa13.42□□□□□ -0.26
COL6A3-209ENST00000472056 TLX1P31314 330 aaPredicted RBP13.42□□□□□ -0.26
COL6A3-209ENST00000472056 ZNHIT3Q15649 155 aaPredicted RBP13.42□□□□□ -0.26
COL6A3-209ENST00000472056 CYP4F12Q9HCS2 524 aa13.42□□□□□ -0.26
COL6A3-209ENST00000472056 PCDHGA3Q9Y5H0 932 aa13.42□□□□□ -0.26
COL6A3-209ENST00000472056 ADAMDEC1O15204 470 aa13.42□□□□□ -0.26
COL6A3-209ENST00000472056 SASH3O75995 380 aa13.42□□□□□ -0.26
COL6A3-209ENST00000472056 FAM153BP0C7A2 387 aa13.42□□□□□ -0.26
COL6A3-209ENST00000472056 HNF4AP41235 474 aa13.42□□□□□ -0.26
COL6A3-209ENST00000472056 HALP42357 657 aa13.42□□□□□ -0.26
COL6A3-209ENST00000472056 OMPP47874 163 aa13.42□□□□□ -0.26
COL6A3-209ENST00000472056 EPC2Q52LR7 807 aa13.42□□□□□ -0.26
COL6A3-209ENST00000472056 RASSF1Q9NS23 344 aa13.42□□□□□ -0.26
COL6A3-209ENST00000472056 CPSF4O95639 269 aaKnown RBP13.42□□□□□ -0.26
COL6A3-209ENST00000472056 ASMTP46597 345 aa13.42□□□□□ -0.26
COL6A3-209ENST00000472056 ZNF621Q6ZSS3 439 aa13.42□□□□□ -0.26
COL6A3-209ENST00000472056 CDYL2Q8N8U2 506 aa13.42□□□□□ -0.26
COL6A3-209ENST00000472056 SMARCD1Q96GM5 515 aa13.42□□□□□ -0.26
COL6A3-209ENST00000472056 TMED5Q9Y3A6 229 aa13.42□□□□□ -0.26
COL6A3-209ENST00000472056 PCDHGA4Q9Y5G9 962 aa13.42□□□□□ -0.26
COL6A3-209ENST00000472056 A0A0G2JPF8 293 aa13.42□□□□□ -0.26
COL6A3-209ENST00000472056 HNRNPCL3B7ZW38 293 aa13.42□□□□□ -0.26
COL6A3-209ENST00000472056 HNRNPCL4P0DMR1 293 aa13.42□□□□□ -0.26
COL6A3-209ENST00000472056 ERVK-9P63128 1117 aa13.42□□□□□ -0.26
COL6A3-209ENST00000472056 IL27RAQ6UWB1 636 aa13.42□□□□□ -0.26
COL6A3-209ENST00000472056 ZC3H10Q96K80 434 aaKnown RBP13.42□□□□□ -0.26
COL6A3-209ENST00000472056 SMPD3Q9NY59 655 aaPredicted RBP13.42□□□□□ -0.26
COL6A3-209ENST00000472056 NINJ2Q9NZG7 142 aa13.42□□□□□ -0.26
COL6A3-209ENST00000472056 MEMO1Q9Y316 297 aa13.42□□□□□ -0.26
COL6A3-209ENST00000472056 CST1P01037 141 aa13.41□□□□□ -0.26
COL6A3-209ENST00000472056 ACSM2AQ08AH3 577 aa13.41□□□□□ -0.26
COL6A3-209ENST00000472056 LIN52Q52LA3 116 aa13.41□□□□□ -0.26
COL6A3-209ENST00000472056 ACSM2BQ68CK6 577 aa13.41□□□□□ -0.26
COL6A3-209ENST00000472056 RIT1Q92963 219 aa13.41□□□□□ -0.26
COL6A3-209ENST00000472056 TMEM143Q96AN5 459 aa13.41□□□□□ -0.26
COL6A3-209ENST00000472056 OXCT2Q9BYC2 517 aaPredicted RBP13.41□□□□□ -0.26
COL6A3-209ENST00000472056 TBCCD1Q9NVR7 557 aa13.41□□□□□ -0.26
COL6A3-209ENST00000472056 TRPS1Q9UHF7 1281 aa13.41□□□□□ -0.26
COL6A3-209ENST00000472056 SLC30A4O14863 429 aa13.41□□□□□ -0.26
COL6A3-209ENST00000472056 C21orf2O43822 256 aa13.41□□□□□ -0.26
COL6A3-209ENST00000472056 FTH1P02794 183 aa13.41□□□□□ -0.26
COL6A3-209ENST00000472056 PRKAR2AP13861 404 aaKnown RBP13.41□□□□□ -0.26
COL6A3-209ENST00000472056 S100A2P29034 98 aa13.41□□□□□ -0.26
COL6A3-209ENST00000472056 ARFIP1P53367 373 aa13.41□□□□□ -0.26
COL6A3-209ENST00000472056 CYP2A13Q16696 494 aa13.41□□□□□ -0.26
COL6A3-209ENST00000472056 SUSD4Q5VX71 490 aa13.41□□□□□ -0.26
COL6A3-209ENST00000472056 ZNF470Q6ECI4 717 aa13.41□□□□□ -0.26
COL6A3-209ENST00000472056 ZPBP2Q6X784 338 aa13.41□□□□□ -0.26
COL6A3-209ENST00000472056 ADGRF2Q8IZF7 708 aa13.41□□□□□ -0.26
COL6A3-209ENST00000472056 ASB7Q9H672 318 aa13.41□□□□□ -0.26
COL6A3-209ENST00000472056 SRP68Q9UHB9 627 aaKnown RBP13.41□□□□□ -0.26
COL6A3-209ENST00000472056 FAM86C2PA6NEL3 165 aa13.41□□□□□ -0.26
COL6A3-209ENST00000472056 TPD52L2O43399 206 aaKnown RBP13.41□□□□□ -0.26
COL6A3-209ENST00000472056 TMEM126BQ8IUX1 230 aa13.41□□□□□ -0.26
COL6A3-209ENST00000472056 ACOX2Q99424 681 aa13.41□□□□□ -0.26
COL6A3-209ENST00000472056 PREX1Q8TCU6 1659 aa13.41□□□□□ -0.26
COL6A3-209ENST00000472056 PTPN1P18031 435 aaKnown RBP13.41□□□□□ -0.26
COL6A3-209ENST00000472056 ARF4P18085 180 aaPredicted RBP13.41□□□□□ -0.26
COL6A3-209ENST00000472056 RAB27AP51159 221 aa13.41□□□□□ -0.26
COL6A3-209ENST00000472056 BMT2Q1RMZ1 405 aa13.41□□□□□ -0.26
COL6A3-209ENST00000472056 FAXCQ5TGI0 409 aa13.41□□□□□ -0.26
COL6A3-209ENST00000472056 ANGEL2Q5VTE6 544 aaKnown RBP13.41□□□□□ -0.26
COL6A3-209ENST00000472056 COMMD2Q86X83 199 aa13.41□□□□□ -0.26
COL6A3-209ENST00000472056 TELO2Q9Y4R8 837 aa13.41□□□□□ -0.26
COL6A3-209ENST00000472056 URADA6NGE7 173 aa13.41□□□□□ -0.26
COL6A3-209ENST00000472056 GPR182O15218 404 aa13.41□□□□□ -0.26
COL6A3-209ENST00000472056 IFNA16P05015 189 aa13.41□□□□□ -0.26
COL6A3-209ENST00000472056 EFCAB12Q6NXP0 572 aa13.41□□□□□ -0.26
COL6A3-209ENST00000472056 CYP20A1Q6UW02 462 aa13.41□□□□□ -0.26
COL6A3-209ENST00000472056 INO80EQ8NBZ0 244 aaPredicted RBP13.41□□□□□ -0.26
COL6A3-209ENST00000472056 ZNF670Q9BS34 389 aa13.41□□□□□ -0.26
COL6A3-209ENST00000472056 COLEC11Q9BWP8 271 aa13.41□□□□□ -0.26
COL6A3-209ENST00000472056 ARMCX1Q9P291 453 aa13.41□□□□□ -0.26
COL6A3-209ENST00000472056 MAGEB3O15480 346 aa13.41□□□□□ -0.26
COL6A3-209ENST00000472056 SUV39H1O43463 412 aa13.41□□□□□ -0.26
COL6A3-209ENST00000472056 RAMP2O60895 175 aa13.41□□□□□ -0.26
COL6A3-209ENST00000472056 METTL18O95568 372 aa13.41□□□□□ -0.26
COL6A3-209ENST00000472056 ABATP80404 500 aa13.41□□□□□ -0.26
COL6A3-209ENST00000472056 PCID2Q5JVF3 399 aa13.41□□□□□ -0.26
COL6A3-209ENST00000472056 OR2T34Q8NGX1 318 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms