RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	GPATCH4	Q5T3I0	446 aa	Known RBP	4.04	□□□□□ -1.76
PTCD3-209	ENST00000472044	CCDC30	Q5VVM6	783 aa		4.04	□□□□□ -1.76
PTCD3-209	ENST00000472044	HAUS3	Q68CZ6	603 aa		4.04	□□□□□ -1.76
PTCD3-209	ENST00000472044	HMBOX1	Q6NT76	420 aa		4.04	□□□□□ -1.76
PTCD3-209	ENST00000472044	MRPL10	Q7Z7H8	261 aa	Known RBP	4.04	□□□□□ -1.76
PTCD3-209	ENST00000472044	CCDC105	Q8IYK2	499 aa		4.04	□□□□□ -1.76
PTCD3-209	ENST00000472044	MMP21	Q8N119	569 aa		4.04	□□□□□ -1.76
PTCD3-209	ENST00000472044	ADSSL1	Q8N142	457 aa		4.04	□□□□□ -1.76
PTCD3-209	ENST00000472044	NGEF	Q8N5V2	710 aa		4.04	□□□□□ -1.76
PTCD3-209	ENST00000472044	TEX45	Q8NA69	505 aa		4.04	□□□□□ -1.76
PTCD3-209	ENST00000472044	ANKRD52	Q8NB46	1076 aa		4.04	□□□□□ -1.76
PTCD3-209	ENST00000472044	TMEM163	Q8TC26	289 aa		4.04	□□□□□ -1.76
PTCD3-209	ENST00000472044	NEK9	Q8TD19	979 aa		4.04	□□□□□ -1.76
PTCD3-209	ENST00000472044	ATOH1	Q92858	354 aa	Predicted RBP	4.04	□□□□□ -1.76
PTCD3-209	ENST00000472044	SNAPC3	Q92966	411 aa		4.04	□□□□□ -1.76
PTCD3-209	ENST00000472044	WDR77	Q9BQA1	342 aa	Predicted RBP	4.04	□□□□□ -1.76
PTCD3-209	ENST00000472044	H2AFJ	Q9BTM1	129 aa		4.04	□□□□□ -1.76
PTCD3-209	ENST00000472044	HEMGN	Q9BXL5	484 aa		4.04	□□□□□ -1.76
PTCD3-209	ENST00000472044	GLIS2	Q9BZE0	524 aa	Predicted RBP	4.04	□□□□□ -1.76
PTCD3-209	ENST00000472044	MVB12B	Q9H7P6	319 aa		4.04	□□□□□ -1.76
PTCD3-209	ENST00000472044	TBC1D22B	Q9NU19	505 aa		4.04	□□□□□ -1.76
PTCD3-209	ENST00000472044	DECR2	Q9NUI1	292 aa		4.04	□□□□□ -1.76
PTCD3-209	ENST00000472044	BLOC1S4	Q9NUP1	217 aa		4.04	□□□□□ -1.76
PTCD3-209	ENST00000472044	SPATS2L	Q9NUQ6	558 aa	Known RBP	4.04	□□□□□ -1.76
PTCD3-209	ENST00000472044	MAP3K20	Q9NYL2	800 aa	Known RBP	4.04	□□□□□ -1.76
PTCD3-209	ENST00000472044	A4GNT	Q9UNA3	340 aa		4.04	□□□□□ -1.76
PTCD3-209	ENST00000472044	HS3ST3B1	Q9Y662	390 aa		4.04	□□□□□ -1.76
PTCD3-209	ENST00000472044	LY6G6E	A0A0G2JKS1	128 aa		4.03	□□□□□ -1.76
PTCD3-209	ENST00000472044	CCNDBP1	O95273	360 aa		4.03	□□□□□ -1.76
PTCD3-209	ENST00000472044	HOXB5	P09067	269 aa		4.03	□□□□□ -1.76
PTCD3-209	ENST00000472044	IRF1	P10914	325 aa		4.03	□□□□□ -1.76
PTCD3-209	ENST00000472044	CYP19A1	P11511	503 aa	Predicted RBP	4.03	□□□□□ -1.76
PTCD3-209	ENST00000472044	PCNA	P12004	261 aa		4.03	□□□□□ -1.76
PTCD3-209	ENST00000472044	LAMP2	P13473	410 aa		4.03	□□□□□ -1.76
PTCD3-209	ENST00000472044	PRF1	P14222	555 aa		4.03	□□□□□ -1.76
PTCD3-209	ENST00000472044	SRD5A1	P18405	259 aa		4.03	□□□□□ -1.76
PTCD3-209	ENST00000472044	POU1F1	P28069	291 aa		4.03	□□□□□ -1.76
PTCD3-209	ENST00000472044	ICAM3	P32942	547 aa		4.03	□□□□□ -1.76
PTCD3-209	ENST00000472044	AVPR1A	P37288	418 aa		4.03	□□□□□ -1.76
PTCD3-209	ENST00000472044	ME1	P48163	572 aa		4.03	□□□□□ -1.76
PTCD3-209	ENST00000472044	NEXN	Q0ZGT2	675 aa		4.03	□□□□□ -1.76
PTCD3-209	ENST00000472044	DCTN2	Q13561	401 aa	Known RBP	4.03	□□□□□ -1.76
PTCD3-209	ENST00000472044	EIF4A2	Q14240	407 aa	Known RBP	4.03	□□□□□ -1.76
PTCD3-209	ENST00000472044	RNPS1	Q15287	305 aa	Known RBP	4.03	□□□□□ -1.76
PTCD3-209	ENST00000472044	HIST2H2AC	Q16777	129 aa	Predicted RBP	4.03	□□□□□ -1.76
PTCD3-209	ENST00000472044	DUSP6	Q16828	381 aa		4.03	□□□□□ -1.76
PTCD3-209	ENST00000472044	PXDC1	Q5TGL8	231 aa		4.03	□□□□□ -1.76
PTCD3-209	ENST00000472044	CDC73	Q6P1J9	531 aa		4.03	□□□□□ -1.76
PTCD3-209	ENST00000472044	TMEM71	Q6P5X7	295 aa		4.03	□□□□□ -1.76
PTCD3-209	ENST00000472044	TMED8	Q6PL24	325 aa	Predicted RBP	4.03	□□□□□ -1.76
PTCD3-209	ENST00000472044	SHC4	Q6S5L8	630 aa		4.03	□□□□□ -1.76
PTCD3-209	ENST00000472044	CLEC4G	Q6UXB4	293 aa		4.03	□□□□□ -1.76
PTCD3-209	ENST00000472044	SLC46A3	Q7Z3Q1	461 aa		4.03	□□□□□ -1.76
PTCD3-209	ENST00000472044	TBC1D26	Q86UD7	250 aa		4.03	□□□□□ -1.76
PTCD3-209	ENST00000472044	HORMAD2	Q8N7B1	307 aa		4.03	□□□□□ -1.76
PTCD3-209	ENST00000472044	RASSF8	Q8NHQ8	419 aa		4.03	□□□□□ -1.76
PTCD3-209	ENST00000472044	DENND1A	Q8TEH3	1009 aa		4.03	□□□□□ -1.76
PTCD3-209	ENST00000472044	RNF183	Q96D59	192 aa		4.03	□□□□□ -1.76
PTCD3-209	ENST00000472044	MAP7D2	Q96T17	732 aa		4.03	□□□□□ -1.76
PTCD3-209	ENST00000472044	STRA6	Q9BX79	667 aa		4.03	□□□□□ -1.76
PTCD3-209	ENST00000472044	CDT1	Q9H211	546 aa		4.03	□□□□□ -1.76
PTCD3-209	ENST00000472044	PLEKHA4	Q9H4M7	779 aa		4.03	□□□□□ -1.76
PTCD3-209	ENST00000472044	PRKRIP1	Q9H875	184 aa	Predicted RBP	4.03	□□□□□ -1.76
PTCD3-209	ENST00000472044	PCDHB16	Q9NRJ7	776 aa		4.03	□□□□□ -1.76
PTCD3-209	ENST00000472044	COG5	Q9UP83	839 aa		4.03	□□□□□ -1.76
PTCD3-209	ENST00000472044	CARD8	Q9Y2G2	431 aa		4.03	□□□□□ -1.76
PTCD3-209	ENST00000472044	RAI2	Q9Y5P3	530 aa		4.03	□□□□□ -1.76
PTCD3-209	ENST00000472044	PSAT1	Q9Y617	370 aa		4.03	□□□□□ -1.76
PTCD3-209	ENST00000472044	SCIN	Q9Y6U3	715 aa		4.03	□□□□□ -1.76
PTCD3-209	ENST00000472044	CKAP5	Q14008	2032 aa		4.02	□□□□□ -1.77
PTCD3-209	ENST00000472044	TTC36	A6NLP5	189 aa		4.02	□□□□□ -1.77
PTCD3-209	ENST00000472044	STMND1	H3BQB6	276 aa		4.02	□□□□□ -1.77
PTCD3-209	ENST00000472044	SLC25A17	O43808	307 aa		4.02	□□□□□ -1.77
PTCD3-209	ENST00000472044	ZC3H11A	O75152	810 aa	Known RBP eCLIP	4.02	□□□□□ -1.77
PTCD3-209	ENST00000472044	MOSPD3	O75425	235 aa		4.02	□□□□□ -1.77
PTCD3-209	ENST00000472044	NDUFB8	O95169	186 aa		4.02	□□□□□ -1.77
PTCD3-209	ENST00000472044	CLDN7	O95471	211 aa		4.02	□□□□□ -1.77
PTCD3-209	ENST00000472044	TMEM191B	P0C7N4	346 aa		4.02	□□□□□ -1.77
PTCD3-209	ENST00000472044	CHRNB2	P17787	502 aa		4.02	□□□□□ -1.77
PTCD3-209	ENST00000472044	TBXAS1	P24557	533 aa	Predicted RBP	4.02	□□□□□ -1.77
PTCD3-209	ENST00000472044	DCTD	P32321	178 aa		4.02	□□□□□ -1.77
PTCD3-209	ENST00000472044	CTCF	P49711	727 aa	Predicted RBP	4.02	□□□□□ -1.77
PTCD3-209	ENST00000472044	CLDN2	P57739	230 aa		4.02	□□□□□ -1.77
PTCD3-209	ENST00000472044	RPS3A	P61247	264 aa	Known RBP	4.02	□□□□□ -1.77
PTCD3-209	ENST00000472044	SET	Q01105	290 aa	Predicted RBP	4.02	□□□□□ -1.77
PTCD3-209	ENST00000472044	CCNG2	Q16589	344 aa		4.02	□□□□□ -1.77
PTCD3-209	ENST00000472044	EPHA10	Q5JZY3	1008 aa		4.02	□□□□□ -1.77
PTCD3-209	ENST00000472044	MANEA	Q5SRI9	462 aa		4.02	□□□□□ -1.77
PTCD3-209	ENST00000472044	SNX30	Q5VWJ9	437 aa		4.02	□□□□□ -1.77
PTCD3-209	ENST00000472044	HEPHL1	Q6MZM0	1159 aa		4.02	□□□□□ -1.77
PTCD3-209	ENST00000472044	C11orf87	Q6NUJ2	197 aa		4.02	□□□□□ -1.77
PTCD3-209	ENST00000472044	CPLX2	Q6PUV4	134 aa	Known RBP	4.02	□□□□□ -1.77
PTCD3-209	ENST00000472044	PARM1	Q6UWI2	310 aa		4.02	□□□□□ -1.77
PTCD3-209	ENST00000472044	SLC16A12	Q6ZSM3	486 aa		4.02	□□□□□ -1.77
PTCD3-209	ENST00000472044	TRAPPC11	Q7Z392	1133 aa		4.02	□□□□□ -1.77
PTCD3-209	ENST00000472044	PXK	Q7Z7A4	578 aa		4.02	□□□□□ -1.77
PTCD3-209	ENST00000472044	CPLX4	Q7Z7G2	160 aa		4.02	□□□□□ -1.77
PTCD3-209	ENST00000472044	GPAT4	Q86UL3	456 aa		4.02	□□□□□ -1.77
PTCD3-209	ENST00000472044	DENND6A	Q8IWF6	608 aa		4.02	□□□□□ -1.77
PTCD3-209	ENST00000472044	NANOGP1	Q8N7R0	232 aa		4.02	□□□□□ -1.77

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