RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 SLC9B1Q4ZJI4 515 aa13.88□□□□□ -0.19
CCDC88A-211ENST00000471947 MS4A13Q5J8X5 152 aa13.88□□□□□ -0.19
CCDC88A-211ENST00000471947 SNX32Q86XE0 403 aa13.88□□□□□ -0.19
CCDC88A-211ENST00000471947 BBS5Q8N3I7 341 aa13.88□□□□□ -0.19
CCDC88A-211ENST00000471947 OLFM3Q96PB7 478 aa13.88□□□□□ -0.19
CCDC88A-211ENST00000471947 DDX50Q9BQ39 737 aaKnown RBP13.88□□□□□ -0.19
CCDC88A-211ENST00000471947 RGS18Q9NS28 235 aa13.88□□□□□ -0.19
CCDC88A-211ENST00000471947 EURLQ9NYK6 297 aa13.88□□□□□ -0.19
CCDC88A-211ENST00000471947 BTRCQ9Y297 605 aa13.88□□□□□ -0.19
CCDC88A-211ENST00000471947 FCF1Q9Y324 198 aaKnown RBP13.88□□□□□ -0.19
CCDC88A-211ENST00000471947 PCDHB9Q9Y5E1 797 aa13.88□□□□□ -0.19
CCDC88A-211ENST00000471947 SF3B1O75533 1304 aaKnown RBP eCLIP13.88□□□□□ -0.191e-10■■■■■ 241.2
CCDC88A-211ENST00000471947 IQCF5A8MTL0 148 aa13.88□□□□□ -0.19
CCDC88A-211ENST00000471947 GIPC1O14908 333 aa13.88□□□□□ -0.19
CCDC88A-211ENST00000471947 NDUFS3O75489 264 aa13.88□□□□□ -0.19
CCDC88A-211ENST00000471947 SIX3O95343 332 aaPredicted RBP13.88□□□□□ -0.19
CCDC88A-211ENST00000471947 ALDH1A1P00352 501 aa13.88□□□□□ -0.19
CCDC88A-211ENST00000471947 HADHAP40939 763 aa13.88□□□□□ -0.19
CCDC88A-211ENST00000471947 PIK3CGP48736 1102 aa13.88□□□□□ -0.19
CCDC88A-211ENST00000471947 NEK3P51956 506 aa13.88□□□□□ -0.19
CCDC88A-211ENST00000471947 OXCT1P55809 520 aa13.88□□□□□ -0.19
CCDC88A-211ENST00000471947 ABCE1P61221 599 aaKnown RBP13.88□□□□□ -0.19
CCDC88A-211ENST00000471947 PFKFB4Q16877 469 aa13.88□□□□□ -0.19
CCDC88A-211ENST00000471947 TEDDM1Q5T9Z0 273 aa13.88□□□□□ -0.19
CCDC88A-211ENST00000471947 CEP97Q8IW35 865 aa13.88□□□□□ -0.19
CCDC88A-211ENST00000471947 ZNF366Q8N895 744 aa13.88□□□□□ -0.19
CCDC88A-211ENST00000471947 TNKS2Q9H2K2 1166 aa13.88□□□□□ -0.19
CCDC88A-211ENST00000471947 TRPM5Q9NZQ8 1165 aa13.88□□□□□ -0.19
CCDC88A-211ENST00000471947 KANSL3Q9P2N6 904 aa13.88□□□□□ -0.19
CCDC88A-211ENST00000471947 BRCA1P38398 1863 aaKnown RBP13.88□□□□□ -0.19
CCDC88A-211ENST00000471947 C2orf78A6NCI8 922 aa13.88□□□□□ -0.19
CCDC88A-211ENST00000471947 KATNA1O75449 491 aa13.88□□□□□ -0.19
CCDC88A-211ENST00000471947 CORO1AP31146 461 aaKnown RBP13.88□□□□□ -0.19
CCDC88A-211ENST00000471947 BFSP2Q13515 415 aa13.88□□□□□ -0.19
CCDC88A-211ENST00000471947 PCID2Q5JVF3 399 aa13.88□□□□□ -0.19
CCDC88A-211ENST00000471947 RNF219Q5W0B1 726 aaPredicted RBP13.88□□□□□ -0.19
CCDC88A-211ENST00000471947 LINC01599Q8WXQ3 324 aa13.88□□□□□ -0.19
CCDC88A-211ENST00000471947 RBBP8Q99708 897 aa13.88□□□□□ -0.19
CCDC88A-211ENST00000471947 GPR63Q9BZJ6 419 aa13.88□□□□□ -0.19
CCDC88A-211ENST00000471947 TRIM8Q9BZR9 551 aa13.88□□□□□ -0.19
CCDC88A-211ENST00000471947 ILKAPQ9H0C8 392 aaPredicted RBP13.88□□□□□ -0.19
CCDC88A-211ENST00000471947 ZDHHC4Q9NPG8 344 aa13.88□□□□□ -0.19
CCDC88A-211ENST00000471947 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP13.88□□□□□ -0.19
CCDC88A-211ENST00000471947 TRHDEQ9UKU6 1024 aa13.88□□□□□ -0.19
CCDC88A-211ENST00000471947 PALM2-AKAP2B1ALY0 433 aaPredicted RBP13.87□□□□□ -0.19
CCDC88A-211ENST00000471947 HHLA1C9JL84 531 aa13.87□□□□□ -0.19
CCDC88A-211ENST00000471947 NCAM2O15394 837 aa13.87□□□□□ -0.19
CCDC88A-211ENST00000471947 MTSS1O43312 755 aa13.87□□□□□ -0.19
CCDC88A-211ENST00000471947 CD1EP15812 388 aa13.87□□□□□ -0.19
CCDC88A-211ENST00000471947 TFEBP19484 476 aa13.87□□□□□ -0.19
CCDC88A-211ENST00000471947 PRKCHP24723 683 aa13.87□□□□□ -0.19
CCDC88A-211ENST00000471947 GLUD2P49448 558 aa13.87□□□□□ -0.19
CCDC88A-211ENST00000471947 MLLT6P55198 1093 aaPredicted RBP13.87□□□□□ -0.19
CCDC88A-211ENST00000471947 PAFAH1B3Q15102 231 aaKnown RBP13.87□□□□□ -0.19
CCDC88A-211ENST00000471947 FAM83EQ2M2I3 478 aa13.87□□□□□ -0.19
CCDC88A-211ENST00000471947 GRTP1Q5TC63 336 aa13.87□□□□□ -0.19
CCDC88A-211ENST00000471947 BTBD10Q9BSF8 475 aa13.87□□□□□ -0.19
CCDC88A-211ENST00000471947 SEMA4BQ9NPR2 832 aaPredicted RBP13.87□□□□□ -0.19
CCDC88A-211ENST00000471947 LCTP09848 1927 aa13.87□□□□□ -0.19
CCDC88A-211ENST00000471947 MTMR11A4FU01 709 aa13.87□□□□□ -0.19
CCDC88A-211ENST00000471947 STX16-NPEPL1H3BU86 382 aa13.87□□□□□ -0.19
CCDC88A-211ENST00000471947 TRIM16O95361 564 aa13.87□□□□□ -0.19
CCDC88A-211ENST00000471947 ZCCHC18P0CG32 403 aa13.87□□□□□ -0.19
CCDC88A-211ENST00000471947 T-ENOLP0DO92 83 aa13.87□□□□□ -0.19
CCDC88A-211ENST00000471947 CREB5Q02930 508 aa13.87□□□□□ -0.19
CCDC88A-211ENST00000471947 VEPH1Q14D04 833 aa13.87□□□□□ -0.19
CCDC88A-211ENST00000471947 LACTB2Q53H82 288 aaPredicted RBP13.87□□□□□ -0.19
CCDC88A-211ENST00000471947 PKN3Q6P5Z2 889 aa13.87□□□□□ -0.19
CCDC88A-211ENST00000471947 LINC00523Q86TU6 105 aa13.87□□□□□ -0.19
CCDC88A-211ENST00000471947 SPATA24Q86W54 205 aa13.87□□□□□ -0.19
CCDC88A-211ENST00000471947 RELL1Q8IUW5 271 aa13.87□□□□□ -0.19
CCDC88A-211ENST00000471947 OR4K2Q8NGD2 314 aa13.87□□□□□ -0.19
CCDC88A-211ENST00000471947 PHACTR1Q9C0D0 580 aa13.87□□□□□ -0.19
CCDC88A-211ENST00000471947 TCF7L2Q9NQB0 619 aa13.87□□□□□ -0.19
CCDC88A-211ENST00000471947 USP3Q9Y6I4 520 aa13.87□□□□□ -0.19
CCDC88A-211ENST00000471947 TIMM44O43615 452 aa13.87□□□□□ -0.19
CCDC88A-211ENST00000471947 DLDP09622 509 aaKnown RBP13.87□□□□□ -0.19
CCDC88A-211ENST00000471947 CRHR1P34998 444 aa13.87□□□□□ -0.19
CCDC88A-211ENST00000471947 PITRM1Q5JRX3 1037 aa13.87□□□□□ -0.19
CCDC88A-211ENST00000471947 KLC3Q6P597 504 aa13.87□□□□□ -0.19
CCDC88A-211ENST00000471947 GALNT4Q8N4A0 578 aa13.87□□□□□ -0.19
CCDC88A-211ENST00000471947 PPWD1Q96BP3 646 aaKnown RBP13.87□□□□□ -0.19
CCDC88A-211ENST00000471947 MIPEPQ99797 713 aa13.87□□□□□ -0.19
CCDC88A-211ENST00000471947 NAT9Q9BTE0 207 aa13.87□□□□□ -0.19
CCDC88A-211ENST00000471947 CCDC134Q9H6E4 229 aa13.87□□□□□ -0.19
CCDC88A-211ENST00000471947 MARCH4Q9P2E8 410 aaPredicted RBP13.87□□□□□ -0.19
CCDC88A-211ENST00000471947 SRP72O76094 671 aaKnown RBP13.86□□□□□ -0.19
CCDC88A-211ENST00000471947 SKIP12755 728 aa13.86□□□□□ -0.19
CCDC88A-211ENST00000471947 SLC11A2P49281 568 aa13.86□□□□□ -0.19
CCDC88A-211ENST00000471947 NIPAL4Q0D2K0 466 aa13.86□□□□□ -0.19
CCDC88A-211ENST00000471947 TRIM60Q495X7 471 aa13.86□□□□□ -0.19
CCDC88A-211ENST00000471947 HPS6Q86YV9 775 aa13.86□□□□□ -0.19
CCDC88A-211ENST00000471947 ARHGAP24Q8N264 748 aa13.86□□□□□ -0.19
CCDC88A-211ENST00000471947 RTL3Q8N8U3 475 aaKnown RBP13.86□□□□□ -0.19
CCDC88A-211ENST00000471947 DIS3LQ8TF46 1054 aaKnown RBP13.86□□□□□ -0.19
CCDC88A-211ENST00000471947 HEXDCQ8WVB3 486 aa13.86□□□□□ -0.19
CCDC88A-211ENST00000471947 UTP4Q969X6 686 aaKnown RBP13.86□□□□□ -0.19
CCDC88A-211ENST00000471947 ZNF419Q96HQ0 510 aaPredicted RBP13.86□□□□□ -0.19
CCDC88A-211ENST00000471947 TLE6Q9H808 572 aa13.86□□□□□ -0.19
CCDC88A-211ENST00000471947 PPCSQ9HAB8 311 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms