RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 C12orf65Q9H3J6 166 aaKnown RBP5.42□□□□□ -1.54
SYNE1-220ENST00000471834 TREX1Q9NSU2 369 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 TMEM216Q9P0N5 145 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 ACTR3BQ9P1U1 418 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 ZC3H7BQ9UGR2 993 aaKnown RBP5.42□□□□□ -1.54
SYNE1-220ENST00000471834 MYRFQ9Y2G1 1151 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 COL1A2P08123 1366 aa5.41□□□□□ -1.54
SYNE1-220ENST00000471834 UMPSP11172 480 aa5.41□□□□□ -1.54
SYNE1-220ENST00000471834 NCF2P19878 526 aaPredicted RBP5.41□□□□□ -1.54
SYNE1-220ENST00000471834 HTR7P34969 479 aa5.41□□□□□ -1.54
SYNE1-220ENST00000471834 FCGRTP55899 365 aa5.41□□□□□ -1.54
SYNE1-220ENST00000471834 YWHAGP61981 247 aaKnown RBP eCLIP5.41□□□□□ -1.54
SYNE1-220ENST00000471834 FADDQ13158 208 aa5.41□□□□□ -1.54
SYNE1-220ENST00000471834 SELPLGQ14242 412 aa5.41□□□□□ -1.54
SYNE1-220ENST00000471834 PLA2G4EQ3MJ16 856 aa5.41□□□□□ -1.54
SYNE1-220ENST00000471834 SH3D19Q5HYK7 790 aa5.41□□□□□ -1.54
SYNE1-220ENST00000471834 RNLSQ5VYX0 342 aa5.41□□□□□ -1.54
SYNE1-220ENST00000471834 FAM160B1Q5W0V3 765 aa5.41□□□□□ -1.54
SYNE1-220ENST00000471834 BTBD8Q5XKL5 378 aa5.41□□□□□ -1.54
SYNE1-220ENST00000471834 ZNF773Q6PK81 442 aa5.41□□□□□ -1.54
SYNE1-220ENST00000471834 CDKL3Q8IVW4 592 aaPredicted RBP5.41□□□□□ -1.54
SYNE1-220ENST00000471834 ZBTB8OSQ8IWT0 167 aa5.41□□□□□ -1.54
SYNE1-220ENST00000471834 HSFY1Q96LI6 401 aa5.41□□□□□ -1.54
SYNE1-220ENST00000471834 SLC2A13Q96QE2 648 aa5.41□□□□□ -1.54
SYNE1-220ENST00000471834 PKP2Q99959 881 aa5.41□□□□□ -1.54
SYNE1-220ENST00000471834 COG4Q9H9E3 785 aa5.41□□□□□ -1.54
SYNE1-220ENST00000471834 CXorf21Q9HAI6 301 aa5.41□□□□□ -1.54
SYNE1-220ENST00000471834 SMOXQ9NWM0 555 aa5.41□□□□□ -1.54
SYNE1-220ENST00000471834 TESMINQ9Y4I5 508 aa5.41□□□□□ -1.54
SYNE1-220ENST00000471834 TRIM17Q9Y577 477 aa5.41□□□□□ -1.54
SYNE1-220ENST00000471834 MBL2P11226 248 aaPredicted RBP5.41□□□□□ -1.54
SYNE1-220ENST00000471834 YWHABP31946 246 aaKnown RBP5.41□□□□□ -1.54
SYNE1-220ENST00000471834 MAGEA11P43364 429 aa5.41□□□□□ -1.54
SYNE1-220ENST00000471834 RPL14P50914 215 aaKnown RBP5.41□□□□□ -1.54
SYNE1-220ENST00000471834 SELENBP1Q13228 472 aa5.41□□□□□ -1.54
SYNE1-220ENST00000471834 C1orf146Q5VVC0 180 aa5.41□□□□□ -1.54
SYNE1-220ENST00000471834 METTL2BQ6P1Q9 378 aaKnown RBP5.41□□□□□ -1.54
SYNE1-220ENST00000471834 OR52B2Q96RD2 323 aa5.41□□□□□ -1.54
SYNE1-220ENST00000471834 PRPF18Q99633 342 aaKnown RBP5.41□□□□□ -1.54
SYNE1-220ENST00000471834 RHOJQ9H4E5 214 aa5.41□□□□□ -1.54
SYNE1-220ENST00000471834 TCF7L2Q9NQB0 619 aa5.41□□□□□ -1.54
SYNE1-220ENST00000471834 A8MVJ9 347 aa5.41□□□□□ -1.54
SYNE1-220ENST00000471834 FAM47E-STBD1D6RA91 191 aa5.41□□□□□ -1.54
SYNE1-220ENST00000471834 ATE1O95260 518 aa5.41□□□□□ -1.54
SYNE1-220ENST00000471834 RASAL1O95294 804 aa5.41□□□□□ -1.54
SYNE1-220ENST00000471834 IGHA2P01877 340 aa5.41□□□□□ -1.54
SYNE1-220ENST00000471834 UBTFL6P0CB48 400 aaPredicted RBP5.41□□□□□ -1.54
SYNE1-220ENST00000471834 ETS1P14921 441 aa5.41□□□□□ -1.54
SYNE1-220ENST00000471834 ISL1P61371 349 aa5.41□□□□□ -1.54
SYNE1-220ENST00000471834 BST2Q10589 180 aaKnown RBP5.41□□□□□ -1.54
SYNE1-220ENST00000471834 KYAT1Q16773 422 aa5.41□□□□□ -1.54
SYNE1-220ENST00000471834 ALG1LQ6GMV1 187 aa5.41□□□□□ -1.54
SYNE1-220ENST00000471834 SDE2Q6IQ49 451 aa5.41□□□□□ -1.54
SYNE1-220ENST00000471834 TMEM53Q6P2H8 277 aa5.41□□□□□ -1.54
SYNE1-220ENST00000471834 C16orf89Q6UX73 402 aa5.41□□□□□ -1.54
SYNE1-220ENST00000471834 SLC51AQ86UW1 340 aa5.41□□□□□ -1.54
SYNE1-220ENST00000471834 NUDCD3Q8IVD9 361 aa5.41□□□□□ -1.54
SYNE1-220ENST00000471834 CEP70Q8NHQ1 597 aa5.41□□□□□ -1.54
SYNE1-220ENST00000471834 RHOXF1Q8NHV9 184 aa5.41□□□□□ -1.54
SYNE1-220ENST00000471834 CENPNQ96H22 339 aaPredicted RBP5.41□□□□□ -1.54
SYNE1-220ENST00000471834 POPDC3Q9HBV1 291 aa5.41□□□□□ -1.54
SYNE1-220ENST00000471834 DTLQ9NZJ0 730 aa5.41□□□□□ -1.54
SYNE1-220ENST00000471834 COQ6Q9Y2Z9 468 aa5.41□□□□□ -1.54
SYNE1-220ENST00000471834 AP4S1Q9Y587 144 aa5.41□□□□□ -1.54
SYNE1-220ENST00000471834 CORINQ9Y5Q5 1042 aa5.41□□□□□ -1.54
SYNE1-220ENST00000471834 ZNFX1Q9P2E3 1918 aaKnown RBP5.41□□□□□ -1.54
SYNE1-220ENST00000471834 LRRC37A2A6NM11 1700 aa5.41□□□□□ -1.54
SYNE1-220ENST00000471834 HNRNPRO43390 633 aaKnown RBP5.41□□□□□ -1.54
SYNE1-220ENST00000471834 PGK1P00558 417 aa5.41□□□□□ -1.54
SYNE1-220ENST00000471834 ACADMP11310 421 aa5.41□□□□□ -1.54
SYNE1-220ENST00000471834 HMOX2P30519 316 aa5.41□□□□□ -1.54
SYNE1-220ENST00000471834 EIF2DP41214 584 aaKnown RBP5.41□□□□□ -1.54
SYNE1-220ENST00000471834 STAT2P52630 851 aa5.41□□□□□ -1.54
SYNE1-220ENST00000471834 RBBP7Q16576 425 aa5.41□□□□□ -1.54
SYNE1-220ENST00000471834 KIAA0930Q6ICG6 404 aaPredicted RBP5.41□□□□□ -1.54
SYNE1-220ENST00000471834 RHPN2Q8IUC4 686 aa5.41□□□□□ -1.54
SYNE1-220ENST00000471834 DYNC2LI1Q8TCX1 351 aa5.41□□□□□ -1.54
SYNE1-220ENST00000471834 TBRG4Q969Z0 631 aaKnown RBP eCLIP5.41□□□□□ -1.54
SYNE1-220ENST00000471834 ZNF512Q96ME7 567 aaPredicted RBP5.41□□□□□ -1.54
SYNE1-220ENST00000471834 PCYT2Q99447 389 aa5.41□□□□□ -1.54
SYNE1-220ENST00000471834 GGA3Q9NZ52 723 aa5.41□□□□□ -1.54
SYNE1-220ENST00000471834 PPARGC1AQ9UBK2 798 aaKnown RBP5.41□□□□□ -1.54
SYNE1-220ENST00000471834 DERAQ9Y315 318 aa5.41□□□□□ -1.54
SYNE1-220ENST00000471834 HEMK1Q9Y5R4 338 aaPredicted RBP5.41□□□□□ -1.54
SYNE1-220ENST00000471834 I6L893 689 aaPredicted RBP5.41□□□□□ -1.54
SYNE1-220ENST00000471834 LSM1O15116 133 aaKnown RBP5.41□□□□□ -1.54
SYNE1-220ENST00000471834 MSI1O43347 362 aaKnown RBP5.41□□□□□ -1.54
SYNE1-220ENST00000471834 EFNA1P20827 205 aaPredicted RBP5.41□□□□□ -1.54
SYNE1-220ENST00000471834 PDAP1Q13442 181 aaKnown RBP5.41□□□□□ -1.54
SYNE1-220ENST00000471834 MANEALQ5VSG8 457 aa5.41□□□□□ -1.54
SYNE1-220ENST00000471834 ZYG11AQ6WRX3 759 aa5.41□□□□□ -1.54
SYNE1-220ENST00000471834 MMAAQ8IVH4 418 aaKnown RBP5.41□□□□□ -1.54
SYNE1-220ENST00000471834 TMIGD2Q96BF3 282 aa5.41□□□□□ -1.54
SYNE1-220ENST00000471834 GJD4Q96KN9 370 aaPredicted RBP5.41□□□□□ -1.54
SYNE1-220ENST00000471834 CSF3RQ99062 836 aa5.41□□□□□ -1.54
SYNE1-220ENST00000471834 SNX25Q9H3E2 840 aa5.41□□□□□ -1.54
SYNE1-220ENST00000471834 SP140LQ9H930 580 aa5.41□□□□□ -1.54
SYNE1-220ENST00000471834 EFCAB1Q9HAE3 211 aa5.41□□□□□ -1.54
SYNE1-220ENST00000471834 CISHQ9NSE2 258 aa5.41□□□□□ -1.54
SYNE1-220ENST00000471834 GPC6Q9Y625 555 aaPredicted RBP5.41□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms