RNA–Protein interactions for RNA: ENST00000471309.1

VPS52-216, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 505 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-216ENST00000471309 FSHRP23945 695 aa9.49□□□□□ -0.89
VPS52-216ENST00000471309 ADRA1DP25100 572 aa9.49□□□□□ -0.89
VPS52-216ENST00000471309 CNTFP26441 200 aa9.49□□□□□ -0.89
VPS52-216ENST00000471309 MDH1P40925 334 aaKnown RBP9.49□□□□□ -0.89
VPS52-216ENST00000471309 CHRNA4P43681 627 aa9.49□□□□□ -0.89
VPS52-216ENST00000471309 RGRP47804 291 aa9.49□□□□□ -0.89
VPS52-216ENST00000471309 SERPINB9P50453 376 aa9.49□□□□□ -0.89
VPS52-216ENST00000471309 SERPINH1P50454 418 aaKnown RBP9.49□□□□□ -0.89
VPS52-216ENST00000471309 RHOAP61586 193 aa9.49□□□□□ -0.89
VPS52-216ENST00000471309 AP1S1P61966 158 aa9.49□□□□□ -0.89
VPS52-216ENST00000471309 NSUN2Q08J23 767 aaKnown RBP eCLIP9.49□□□□□ -0.89
VPS52-216ENST00000471309 HYAL1Q12794 435 aa9.49□□□□□ -0.89
VPS52-216ENST00000471309 LMAN2Q12907 356 aa9.49□□□□□ -0.89
VPS52-216ENST00000471309 MSLNQ13421 630 aaPredicted RBP9.49□□□□□ -0.89
VPS52-216ENST00000471309 POU6F1Q14863 301 aa9.49□□□□□ -0.89
VPS52-216ENST00000471309 SLC1A5Q15758 541 aa9.49□□□□□ -0.89
VPS52-216ENST00000471309 PLEKHG6Q3KR16 790 aa9.49□□□□□ -0.89
VPS52-216ENST00000471309 PITRM1Q5JRX3 1037 aa9.49□□□□□ -0.89
VPS52-216ENST00000471309 SIRPB2Q5JXA9 342 aa9.49□□□□□ -0.89
VPS52-216ENST00000471309 LGSNQ5TDP6 509 aa9.49□□□□□ -0.89
VPS52-216ENST00000471309 LINGO4Q6UY18 593 aa9.49□□□□□ -0.89
VPS52-216ENST00000471309 GPR149Q86SP6 731 aa9.49□□□□□ -0.89
VPS52-216ENST00000471309 RASSF3Q86WH2 238 aa9.49□□□□□ -0.89
VPS52-216ENST00000471309 NPAS3Q8IXF0 933 aa9.49□□□□□ -0.89
VPS52-216ENST00000471309 APCDD1Q8J025 514 aa9.49□□□□□ -0.89
VPS52-216ENST00000471309 PLCD3Q8N3E9 789 aa9.49□□□□□ -0.89
VPS52-216ENST00000471309 EFHBQ8N7U6 833 aa9.49□□□□□ -0.89
VPS52-216ENST00000471309 IRF7Q92985 503 aa9.49□□□□□ -0.89
VPS52-216ENST00000471309 BHMTQ93088 406 aa9.49□□□□□ -0.89
VPS52-216ENST00000471309 MTBPQ96DY7 904 aa9.49□□□□□ -0.89
VPS52-216ENST00000471309 MRRFQ96E11 262 aaKnown RBP9.49□□□□□ -0.89
VPS52-216ENST00000471309 IFT43Q96FT9 208 aa9.49□□□□□ -0.89
VPS52-216ENST00000471309 FCRL3Q96P31 734 aaPredicted RBP9.49□□□□□ -0.89
VPS52-216ENST00000471309 TRIB3Q96RU7 358 aa9.49□□□□□ -0.89
VPS52-216ENST00000471309 SELENOSQ9BQE4 189 aa9.49□□□□□ -0.89
VPS52-216ENST00000471309 BBS2Q9BXC9 721 aa9.49□□□□□ -0.89
VPS52-216ENST00000471309 TRABDQ9H4I3 376 aa9.49□□□□□ -0.89
VPS52-216ENST00000471309 NOD2Q9HC29 1040 aa9.49□□□□□ -0.89
VPS52-216ENST00000471309 SCUBE2Q9NQ36 999 aa9.49□□□□□ -0.89
VPS52-216ENST00000471309 CHRAC1Q9NRG0 131 aa9.49□□□□□ -0.89
VPS52-216ENST00000471309 TREX1Q9NSU2 369 aa9.49□□□□□ -0.89
VPS52-216ENST00000471309 PLK2Q9NYY3 685 aa9.49□□□□□ -0.89
VPS52-216ENST00000471309 ZFATQ9P243 1243 aa9.49□□□□□ -0.89
VPS52-216ENST00000471309 SMG5Q9UPR3 1016 aaKnown RBP9.49□□□□□ -0.89
VPS52-216ENST00000471309 ARIH1Q9Y4X5 557 aaPredicted RBP9.49□□□□□ -0.89
VPS52-216ENST00000471309 ACTL7AQ9Y615 435 aa9.49□□□□□ -0.89
VPS52-216ENST00000471309 COL4A3Q01955 1670 aa9.48□□□□□ -0.89
VPS52-216ENST00000471309 TMEM120BA0PK00 339 aa9.48□□□□□ -0.89
VPS52-216ENST00000471309 TTC24A2A3L6 582 aaPredicted RBP9.48□□□□□ -0.89
VPS52-216ENST00000471309 SRRM3A6NNA2 597 aaPredicted RBP9.48□□□□□ -0.89
VPS52-216ENST00000471309 NEDD8-MDP1E9PL57 170 aa9.48□□□□□ -0.89
VPS52-216ENST00000471309 PRPF4O43172 522 aaKnown RBP eCLIP9.48□□□□□ -0.891e-6■■■■■ 32.4
VPS52-216ENST00000471309 PIAS1O75925 651 aa9.48□□□□□ -0.89
VPS52-216ENST00000471309 KRT38O76015 456 aa9.48□□□□□ -0.89
VPS52-216ENST00000471309 PAPSS2O95340 614 aaPredicted RBP9.48□□□□□ -0.89
VPS52-216ENST00000471309 NDST3O95803 873 aa9.48□□□□□ -0.89
VPS52-216ENST00000471309 ALADP13716 330 aa9.48□□□□□ -0.89
VPS52-216ENST00000471309 PAMP19021 973 aa9.48□□□□□ -0.89
VPS52-216ENST00000471309 CA4P22748 312 aa9.48□□□□□ -0.89
VPS52-216ENST00000471309 NMBRP28336 390 aa9.48□□□□□ -0.89
VPS52-216ENST00000471309 HLA-FP30511 346 aa9.48□□□□□ -0.89
VPS52-216ENST00000471309 CD70P32970 193 aa9.48□□□□□ -0.89
VPS52-216ENST00000471309 MAPK8P45983 427 aa9.48□□□□□ -0.89
VPS52-216ENST00000471309 NUMBP49757 651 aa9.48□□□□□ -0.89
VPS52-216ENST00000471309 SLC18A1P54219 525 aa9.48□□□□□ -0.89
VPS52-216ENST00000471309 CDK18Q07002 472 aa9.48□□□□□ -0.89
VPS52-216ENST00000471309 SLC20A2Q08357 652 aa9.48□□□□□ -0.89
VPS52-216ENST00000471309 LAMB3Q13751 1172 aa9.48□□□□□ -0.89
VPS52-216ENST00000471309 DMC1Q14565 340 aa9.48□□□□□ -0.89
VPS52-216ENST00000471309 CBX2Q14781 532 aaPredicted RBP9.48□□□□□ -0.89
VPS52-216ENST00000471309 HABP4Q5JVS0 413 aaKnown RBP9.48□□□□□ -0.89
VPS52-216ENST00000471309 RARS2Q5T160 578 aaKnown RBP9.48□□□□□ -0.89
VPS52-216ENST00000471309 PDPK2PQ6A1A2 396 aa9.48□□□□□ -0.89
VPS52-216ENST00000471309 KIAA0930Q6ICG6 404 aaPredicted RBP9.48□□□□□ -0.89
VPS52-216ENST00000471309 ANKRD54Q6NXT1 300 aa9.48□□□□□ -0.89
VPS52-216ENST00000471309 CES3Q6UWW8 571 aa9.48□□□□□ -0.89
VPS52-216ENST00000471309 NLRP9Q7RTR0 991 aa9.48□□□□□ -0.89
VPS52-216ENST00000471309 KCNMB4Q86W47 210 aa9.48□□□□□ -0.89
VPS52-216ENST00000471309 TMEM25Q86YD3 366 aa9.48□□□□□ -0.89
VPS52-216ENST00000471309 UNC5BQ8IZJ1 945 aa9.48□□□□□ -0.89
VPS52-216ENST00000471309 SLC25A41Q8N5S1 370 aa9.48□□□□□ -0.89
VPS52-216ENST00000471309 DDX51Q8N8A6 666 aaKnown RBP eCLIP9.48□□□□□ -0.89
VPS52-216ENST00000471309 OSCP1Q8WVF1 389 aa9.48□□□□□ -0.89
VPS52-216ENST00000471309 SMARCD2Q92925 531 aa9.48□□□□□ -0.89
VPS52-216ENST00000471309 PEX13Q92968 403 aa9.48□□□□□ -0.89
VPS52-216ENST00000471309 CENPTQ96BT3 561 aa9.48□□□□□ -0.89
VPS52-216ENST00000471309 ALKBH8Q96BT7 664 aaKnown RBP9.48□□□□□ -0.89
VPS52-216ENST00000471309 MFSD3Q96ES6 412 aa9.48□□□□□ -0.89
VPS52-216ENST00000471309 EXOC2Q96KP1 924 aa9.48□□□□□ -0.89
VPS52-216ENST00000471309 SMC6Q96SB8 1091 aa9.48□□□□□ -0.89
VPS52-216ENST00000471309 TDRD1Q9BXT4 1180 aaKnown RBP9.48□□□□□ -0.89
VPS52-216ENST00000471309 SLC2A11Q9BYW1 496 aa9.48□□□□□ -0.89
VPS52-216ENST00000471309 TRPV4Q9HBA0 871 aa9.48□□□□□ -0.89
VPS52-216ENST00000471309 PPANQ9NQ55 473 aaKnown RBP9.48□□□□□ -0.89
VPS52-216ENST00000471309 ABCB8Q9NUT2 735 aa9.48□□□□□ -0.89
VPS52-216ENST00000471309 NSMCE4AQ9NXX6 385 aa9.48□□□□□ -0.89
VPS52-216ENST00000471309 OBP2AQ9NY56 170 aa9.48□□□□□ -0.89
VPS52-216ENST00000471309 GDE1Q9NZC3 331 aa9.48□□□□□ -0.89
VPS52-216ENST00000471309 CLEC4EQ9ULY5 219 aa9.48□□□□□ -0.89
VPS52-216ENST00000471309 WNT6Q9Y6F9 365 aa9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 273 ms