RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 NCEH1Q6PIU2 408 aa14.97□□□□□ -0.01
COL9A3-209ENST00000469852 KIAA1324Q6UXG2 1013 aaKnown RBP14.97□□□□□ -0.01
COL9A3-209ENST00000469852 CAMK1DQ8IU85 385 aa14.97□□□□□ -0.01
COL9A3-209ENST00000469852 BBS5Q8N3I7 341 aa14.97□□□□□ -0.01
COL9A3-209ENST00000469852 AADATQ8N5Z0 425 aa14.97□□□□□ -0.01
COL9A3-209ENST00000469852 C12orf50Q8NA57 414 aaPredicted RBP14.97□□□□□ -0.01
COL9A3-209ENST00000469852 CCDC110Q8TBZ0 833 aa14.97□□□□□ -0.01
COL9A3-209ENST00000469852 ARRDC3Q96B67 414 aa14.97□□□□□ -0.01
COL9A3-209ENST00000469852 CCDC114Q96M63 670 aa14.97□□□□□ -0.01
COL9A3-209ENST00000469852 NAP1L3Q99457 506 aaPredicted RBP14.97□□□□□ -0.01
COL9A3-209ENST00000469852 POLR1EQ9GZS1 481 aaKnown RBP14.97□□□□□ -0.01
COL9A3-209ENST00000469852 GLOD4Q9HC38 313 aa14.97□□□□□ -0.01
COL9A3-209ENST00000469852 KLHL8Q9P2G9 620 aaPredicted RBP14.97□□□□□ -0.01
COL9A3-209ENST00000469852 ZNF148Q9UQR1 794 aa14.97□□□□□ -0.01
COL9A3-209ENST00000469852 KIF2AO00139 706 aaPredicted RBP14.96□□□□□ -0.01
COL9A3-209ENST00000469852 MTSS1O43312 755 aa14.96□□□□□ -0.01
COL9A3-209ENST00000469852 NEBLO76041 1014 aa14.96□□□□□ -0.01
COL9A3-209ENST00000469852 URI1O94763 535 aaPredicted RBP14.96□□□□□ -0.01
COL9A3-209ENST00000469852 POP4O95707 220 aaKnown RBP14.96□□□□□ -0.01
COL9A3-209ENST00000469852 UGT2B4P06133 528 aa14.96□□□□□ -0.01
COL9A3-209ENST00000469852 ITGAVP06756 1048 aa14.96□□□□□ -0.01
COL9A3-209ENST00000469852 DRD3P35462 400 aa14.96□□□□□ -0.01
COL9A3-209ENST00000469852 COILP38432 576 aaPredicted RBP14.96□□□□□ -0.01
COL9A3-209ENST00000469852 SKOR1P84550 965 aa14.96□□□□□ -0.01
COL9A3-209ENST00000469852 TRAF2Q12933 501 aa14.96□□□□□ -0.01
COL9A3-209ENST00000469852 ANKRD20A2Q5SQ80 823 aa14.96□□□□□ -0.01
COL9A3-209ENST00000469852 ANKRD20A1Q5TYW2 823 aa14.96□□□□□ -0.01
COL9A3-209ENST00000469852 ANKRD20A3Q5VUR7 823 aa14.96□□□□□ -0.01
COL9A3-209ENST00000469852 PID1Q7Z2X4 250 aa14.96□□□□□ -0.01
COL9A3-209ENST00000469852 PRPF39Q86UA1 669 aaKnown RBP14.96□□□□□ -0.01
COL9A3-209ENST00000469852 ZSWIM9Q86XI8 627 aa14.96□□□□□ -0.01
COL9A3-209ENST00000469852 PGBD3Q8N328 593 aa14.96□□□□□ -0.01
COL9A3-209ENST00000469852 CAMKK1Q8N5S9 505 aa14.96□□□□□ -0.01
COL9A3-209ENST00000469852 FRMD1Q8N878 549 aa14.96□□□□□ -0.01
COL9A3-209ENST00000469852 TMIEQ8NEW7 156 aa14.96□□□□□ -0.01
COL9A3-209ENST00000469852 SPATA22Q8NHS9 363 aa14.96□□□□□ -0.01
COL9A3-209ENST00000469852 MAGOHBQ96A72 148 aaKnown RBP14.96□□□□□ -0.01
COL9A3-209ENST00000469852 RTP4Q96DX8 246 aa14.96□□□□□ -0.01
COL9A3-209ENST00000469852 SIPA1Q96FS4 1042 aa14.96□□□□□ -0.01
COL9A3-209ENST00000469852 SPATA13Q96N96 652 aa14.96□□□□□ -0.01
COL9A3-209ENST00000469852 KLHL32Q96NJ5 620 aa14.96□□□□□ -0.01
COL9A3-209ENST00000469852 RBM15Q96T37 977 aaKnown RBP eCLIP14.96□□□□□ -0.01
COL9A3-209ENST00000469852 FBRSQ9HAH7 460 aa14.96□□□□□ -0.01
COL9A3-209ENST00000469852 SCUBE2Q9NQ36 999 aa14.96□□□□□ -0.01
COL9A3-209ENST00000469852 BCCIPQ9P287 314 aaKnown RBP eCLIP14.96□□□□□ -0.01
COL9A3-209ENST00000469852 AMACRQ9UHK6 382 aa14.96□□□□□ -0.01
COL9A3-209ENST00000469852 DRG1Q9Y295 367 aaKnown RBP14.96□□□□□ -0.01
COL9A3-209ENST00000469852 PCDHGC4Q9Y5F7 938 aa14.96□□□□□ -0.01
COL9A3-209ENST00000469852 NUMA1Q14980 2115 aa14.95□□□□□ -0.02
COL9A3-209ENST00000469852 C5orf60A6NFR6 353 aa14.95□□□□□ -0.02
COL9A3-209ENST00000469852 KPNA3O00505 521 aaPredicted RBP14.95□□□□□ -0.02
COL9A3-209ENST00000469852 TRAFD1O14545 582 aaPredicted RBP14.95□□□□□ -0.02
COL9A3-209ENST00000469852 ZNF500O60304 480 aaPredicted RBP14.95□□□□□ -0.02
COL9A3-209ENST00000469852 PHF2O75151 1096 aa14.95□□□□□ -0.02
COL9A3-209ENST00000469852 MT-CYBP00156 380 aaPredicted RBP14.95□□□□□ -0.02
COL9A3-209ENST00000469852 TUBB4AP04350 444 aa14.95□□□□□ -0.02
COL9A3-209ENST00000469852 ZSCAN5DPP0CG00 497 aa14.95□□□□□ -0.02
COL9A3-209ENST00000469852 SLC8A1P32418 973 aa14.95□□□□□ -0.02
COL9A3-209ENST00000469852 CD86P42081 329 aa14.95□□□□□ -0.02
COL9A3-209ENST00000469852 FNTBP49356 437 aa14.95□□□□□ -0.02
COL9A3-209ENST00000469852 AP1S1P61966 158 aa14.95□□□□□ -0.02
COL9A3-209ENST00000469852 ANGPT1Q15389 498 aa14.95□□□□□ -0.02
COL9A3-209ENST00000469852 GDPD4Q6W3E5 623 aa14.95□□□□□ -0.02
COL9A3-209ENST00000469852 TAB3Q8N5C8 712 aaPredicted RBP14.95□□□□□ -0.02
COL9A3-209ENST00000469852 RLN3Q8WXF3 142 aa14.95□□□□□ -0.02
COL9A3-209ENST00000469852 PRCCQ92733 491 aaPredicted RBP14.95□□□□□ -0.02
COL9A3-209ENST00000469852 IMP4Q96G21 291 aaKnown RBP14.95□□□□□ -0.02
COL9A3-209ENST00000469852 OXNAD1Q96HP4 312 aaPredicted RBP14.95□□□□□ -0.02
COL9A3-209ENST00000469852 VAT1Q99536 393 aa14.95□□□□□ -0.02
COL9A3-209ENST00000469852 CPEB1Q9BZB8 566 aaKnown RBP14.95□□□□□ -0.02
COL9A3-209ENST00000469852 DDX47Q9H0S4 455 aaKnown RBP14.95□□□□□ -0.02
COL9A3-209ENST00000469852 PABPC3Q9H361 631 aaKnown RBP14.95□□□□□ -0.02
COL9A3-209ENST00000469852 FAM86C1Q9NVL1 165 aa14.95□□□□□ -0.02
COL9A3-209ENST00000469852 UBP1Q9NZI7 540 aa14.95□□□□□ -0.02
COL9A3-209ENST00000469852 CDC23Q9UJX2 597 aa14.95□□□□□ -0.02
COL9A3-209ENST00000469852 INVSQ9Y283 1065 aa14.95□□□□□ -0.02
COL9A3-209ENST00000469852 FARP1Q9Y4F1 1045 aaPredicted RBP14.95□□□□□ -0.02
COL9A3-209ENST00000469852 CACNA1HO95180 2353 aa14.95□□□□□ -0.02
COL9A3-209ENST00000469852 PLXND1Q9Y4D7 1925 aa14.94□□□□□ -0.02
COL9A3-209ENST00000469852 A0A1W2PP55 124 aa14.94□□□□□ -0.02
COL9A3-209ENST00000469852 CFAP69A5D8W1 941 aa14.94□□□□□ -0.02
COL9A3-209ENST00000469852 GALR2O43603 387 aaPredicted RBP14.94□□□□□ -0.02
COL9A3-209ENST00000469852 RNASEH1O60930 286 aaKnown RBP14.94□□□□□ -0.02
COL9A3-209ENST00000469852 GCATO75600 419 aa14.94□□□□□ -0.02
COL9A3-209ENST00000469852 ALDH1A2O94788 518 aa14.94□□□□□ -0.02
COL9A3-209ENST00000469852 METTL18O95568 372 aa14.94□□□□□ -0.02
COL9A3-209ENST00000469852 IFNB1P01574 187 aa14.94□□□□□ -0.02
COL9A3-209ENST00000469852 PRNPP04156 253 aa14.94□□□□□ -0.02
COL9A3-209ENST00000469852 PSMB4P28070 264 aa14.94□□□□□ -0.02
COL9A3-209ENST00000469852 PAFAH1B1P43034 410 aa14.94□□□□□ -0.02
COL9A3-209ENST00000469852 CNTN1Q12860 1018 aa14.94□□□□□ -0.02
COL9A3-209ENST00000469852 LRRC73Q5JTD7 316 aa14.94□□□□□ -0.02
COL9A3-209ENST00000469852 FAXCQ5TGI0 409 aa14.94□□□□□ -0.02
COL9A3-209ENST00000469852 CCDC137Q6PK04 289 aaKnown RBP14.94□□□□□ -0.02
COL9A3-209ENST00000469852 PARS2Q7L3T8 475 aaKnown RBP14.94□□□□□ -0.02
COL9A3-209ENST00000469852 DSG4Q86SJ6 1040 aa14.94□□□□□ -0.02
COL9A3-209ENST00000469852 FAM160A2Q8N612 972 aaPredicted RBP14.94□□□□□ -0.02
COL9A3-209ENST00000469852 KIF18AQ8NI77 898 aa14.94□□□□□ -0.02
COL9A3-209ENST00000469852 TADA1Q96BN2 335 aa14.94□□□□□ -0.02
COL9A3-209ENST00000469852 TUBGCP5Q96RT8 1024 aa14.94□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms