RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 CCNIQ14094 377 aa19.3■□□□□ 0.68
VIM-203ENST00000469543 LIPMQ5VYY2 423 aa19.3■□□□□ 0.68
VIM-203ENST00000469543 LPCAT4Q643R3 524 aa19.3■□□□□ 0.68
VIM-203ENST00000469543 PPHLN1Q8NEY8 458 aaKnown RBP19.3■□□□□ 0.68
VIM-203ENST00000469543 IGSF8Q969P0 613 aa19.3■□□□□ 0.68
VIM-203ENST00000469543 DRC3Q9H069 523 aa19.3■□□□□ 0.68
VIM-203ENST00000469543 PRKAR2AP13861 404 aaKnown RBP19.3■□□□□ 0.68
VIM-203ENST00000469543 TSPAN8P19075 237 aa19.3■□□□□ 0.68
VIM-203ENST00000469543 BRMS1LQ5PSV4 323 aa19.3■□□□□ 0.68
VIM-203ENST00000469543 IZUMO2Q6UXV1 221 aa19.3■□□□□ 0.68
VIM-203ENST00000469543 TXNDC5Q8NBS9 432 aaKnown RBP19.3■□□□□ 0.68
VIM-203ENST00000469543 STYXQ8WUJ0 223 aa19.3■□□□□ 0.68
VIM-203ENST00000469543 TREX1Q9NSU2 369 aa19.3■□□□□ 0.68
VIM-203ENST00000469543 FBXO5Q9UKT4 447 aa19.3■□□□□ 0.68
VIM-203ENST00000469543 PIRTP0C851 137 aa19.29■□□□□ 0.68
VIM-203ENST00000469543 PSEN1P49768 467 aa19.29■□□□□ 0.68
VIM-203ENST00000469543 TBL3Q12788 808 aaKnown RBP19.29■□□□□ 0.68
VIM-203ENST00000469543 CMTM5Q96DZ9 223 aa19.29■□□□□ 0.68
VIM-203ENST00000469543 CRISPLD1Q9H336 500 aa19.29■□□□□ 0.68
VIM-203ENST00000469543 STN1Q9H668 368 aaKnown RBP19.29■□□□□ 0.68
VIM-203ENST00000469543 DSEQ9UL01 958 aa19.29■□□□□ 0.68
VIM-203ENST00000469543 SUFUQ9UMX1 484 aa19.29■□□□□ 0.68
VIM-203ENST00000469543 POMPQ9Y244 141 aa19.29■□□□□ 0.68
VIM-203ENST00000469543 PTPRDP23468 1912 aa19.29■□□□□ 0.68
VIM-203ENST00000469543 STX16-NPEPL1H3BU86 382 aa19.29■□□□□ 0.68
VIM-203ENST00000469543 GLDCP23378 1020 aa19.29■□□□□ 0.68
VIM-203ENST00000469543 GCKP35557 465 aa19.29■□□□□ 0.68
VIM-203ENST00000469543 GATMP50440 423 aa19.29■□□□□ 0.68
VIM-203ENST00000469543 ARSDP51689 593 aa19.29■□□□□ 0.68
VIM-203ENST00000469543 MS4A13Q5J8X5 152 aa19.29■□□□□ 0.68
VIM-203ENST00000469543 C6orf163Q5TEZ5 329 aa19.29■□□□□ 0.68
VIM-203ENST00000469543 NEPROQ6NW34 567 aa19.29■□□□□ 0.68
VIM-203ENST00000469543 TMEM154Q6P9G4 183 aa19.29■□□□□ 0.68
VIM-203ENST00000469543 SNX32Q86XE0 403 aa19.29■□□□□ 0.68
VIM-203ENST00000469543 BATF3Q9NR55 127 aa19.29■□□□□ 0.68
VIM-203ENST00000469543 ZNF212Q9UDV6 495 aa19.29■□□□□ 0.68
VIM-203ENST00000469543 ADAMTS6Q9UKP5 1117 aa19.29■□□□□ 0.68
VIM-203ENST00000469543 HDAC3O15379 428 aa19.28■□□□□ 0.68
VIM-203ENST00000469543 CAPN15O75808 1086 aa19.28■□□□□ 0.68
VIM-203ENST00000469543 HOXC13P31276 330 aa19.28■□□□□ 0.68
VIM-203ENST00000469543 RAB27AP51159 221 aa19.28■□□□□ 0.68
VIM-203ENST00000469543 FRG1Q14331 258 aaKnown RBP19.28■□□□□ 0.68
VIM-203ENST00000469543 RAP1GAP2Q684P5 730 aa19.28■□□□□ 0.68
VIM-203ENST00000469543 SEL1L3Q68CR1 1132 aa19.28■□□□□ 0.68
VIM-203ENST00000469543 CCSAPQ6IQ19 270 aaPredicted RBP19.28■□□□□ 0.68
VIM-203ENST00000469543 PGM2L1Q6PCE3 622 aa19.28■□□□□ 0.68
VIM-203ENST00000469543 LINC01599Q8WXQ3 324 aa19.28■□□□□ 0.68
VIM-203ENST00000469543 PPP1R12CQ9BZL4 782 aa19.28■□□□□ 0.68
VIM-203ENST00000469543 RAP2CQ9Y3L5 183 aa19.28■□□□□ 0.68
VIM-203ENST00000469543 NT5C1B-RDH14C9J2C7 533 aa19.28■□□□□ 0.68
VIM-203ENST00000469543 FGF10O15520 208 aaPredicted RBP19.28■□□□□ 0.68
VIM-203ENST00000469543 MAP3K7O43318 606 aa19.28■□□□□ 0.68
VIM-203ENST00000469543 LINGO3P0C6S8 592 aa19.28■□□□□ 0.68
VIM-203ENST00000469543 NUDT2P50583 147 aa19.28■□□□□ 0.68
VIM-203ENST00000469543 MAPRE1Q15691 268 aaKnown RBP19.28■□□□□ 0.68
VIM-203ENST00000469543 CAPRIN2Q6IMN6 1127 aaKnown RBP19.28■□□□□ 0.68
VIM-203ENST00000469543 PHC3Q8NDX5 983 aa19.28■□□□□ 0.68
VIM-203ENST00000469543 ANKRD49Q8WVL7 239 aa19.28■□□□□ 0.68
VIM-203ENST00000469543 PHF21BQ96EK2 531 aa19.28■□□□□ 0.68
VIM-203ENST00000469543 ZNF184Q99676 751 aaPredicted RBP19.28■□□□□ 0.68
VIM-203ENST00000469543 DLGAP2Q9P1A6 1054 aa19.28■□□□□ 0.68
VIM-203ENST00000469543 CRYL1Q9Y2S2 319 aa19.28■□□□□ 0.68
VIM-203ENST00000469543 CDH23Q9H251 3354 aa19.28■□□□□ 0.68
VIM-203ENST00000469543 FAM155AB1AL88 458 aaPredicted RBP19.28■□□□□ 0.68
VIM-203ENST00000469543 CFLARO15519 480 aa19.28■□□□□ 0.68
VIM-203ENST00000469543 MT-CO1P00395 513 aa19.28■□□□□ 0.68
VIM-203ENST00000469543 UBTFL6P0CB48 400 aaPredicted RBP19.28■□□□□ 0.68
VIM-203ENST00000469543 KCNC1P48547 511 aa19.28■□□□□ 0.68
VIM-203ENST00000469543 AP2B1P63010 937 aa19.28■□□□□ 0.68
VIM-203ENST00000469543 CFAP52Q8N1V2 620 aa19.28■□□□□ 0.68
VIM-203ENST00000469543 PGBD5Q8N414 524 aa19.28■□□□□ 0.68
VIM-203ENST00000469543 USP13Q92995 863 aaPredicted RBP19.28■□□□□ 0.68
VIM-203ENST00000469543 TSNARE1Q96NA8 513 aa19.28■□□□□ 0.68
VIM-203ENST00000469543 UPF3AQ9H1J1 476 aaKnown RBP19.28■□□□□ 0.68
VIM-203ENST00000469543 ENTPD7Q9NQZ7 604 aa19.28■□□□□ 0.68
VIM-203ENST00000469543 NDE1Q9NXR1 346 aa19.28■□□□□ 0.68
VIM-203ENST00000469543 TMEM88BA6NKF7 163 aa19.27■□□□□ 0.68
VIM-203ENST00000469543 TMEM114B3SHH9 223 aa19.27■□□□□ 0.68
VIM-203ENST00000469543 CABYRO75952 493 aa19.27■□□□□ 0.68
VIM-203ENST00000469543 ZNF135P52742 658 aaPredicted RBP19.27■□□□□ 0.68
VIM-203ENST00000469543 GEMP55040 296 aa19.27■□□□□ 0.68
VIM-203ENST00000469543 PKNOX1P55347 436 aa19.27■□□□□ 0.68
VIM-203ENST00000469543 TBX4P57082 545 aa19.27■□□□□ 0.68
VIM-203ENST00000469543 KLC1Q07866 573 aa19.27■□□□□ 0.68
VIM-203ENST00000469543 AFMIDQ63HM1 303 aa19.27■□□□□ 0.68
VIM-203ENST00000469543 FBXL22Q6P050 247 aa19.27■□□□□ 0.68
VIM-203ENST00000469543 CNTN4Q8IWV2 1026 aa19.27■□□□□ 0.68
VIM-203ENST00000469543 NUP93Q8N1F7 819 aa19.27■□□□□ 0.68
VIM-203ENST00000469543 PPFIBP2Q8ND30 876 aa19.27■□□□□ 0.68
VIM-203ENST00000469543 OR13J1Q8NGT2 312 aa19.27■□□□□ 0.68
VIM-203ENST00000469543 OR6P1Q8NGX9 317 aa19.27■□□□□ 0.68
VIM-203ENST00000469543 ACTRT2Q8TDY3 377 aa19.27■□□□□ 0.68
VIM-203ENST00000469543 S100A14Q9HCY8 104 aa19.27■□□□□ 0.68
VIM-203ENST00000469543 TBC1D13Q9NVG8 400 aa19.27■□□□□ 0.68
VIM-203ENST00000469543 RNF186Q9NXI6 227 aa19.27■□□□□ 0.68
VIM-203ENST00000469543 MARCH4Q9P2E8 410 aaPredicted RBP19.27■□□□□ 0.68
VIM-203ENST00000469543 A6NHS1 94 aa19.27■□□□□ 0.67
VIM-203ENST00000469543 LUC7L3O95232 432 aaKnown RBP19.27■□□□□ 0.67
VIM-203ENST00000469543 MMP2P08253 660 aa19.27■□□□□ 0.67
VIM-203ENST00000469543 CKBP12277 381 aa19.27■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms