RNA–Protein interactions for RNA: ENST00000469207.5

HDAC3-204, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 829 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-204ENST00000469207 DCP2Q8IU60 420 aaKnown RBP12.46□□□□□ -0.41
HDAC3-204ENST00000469207 CCDC185Q8N715 623 aa12.46□□□□□ -0.41
HDAC3-204ENST00000469207 CENPTQ96BT3 561 aa12.46□□□□□ -0.41
HDAC3-204ENST00000469207 PRR11Q96HE9 360 aaPredicted RBP12.46□□□□□ -0.41
HDAC3-204ENST00000469207 VCPIP1Q96JH7 1222 aa12.46□□□□□ -0.41
HDAC3-204ENST00000469207 LENG8Q96PV6 779 aaPredicted RBP12.46□□□□□ -0.41
HDAC3-204ENST00000469207 DUSP23Q9BVJ7 150 aa12.46□□□□□ -0.41
HDAC3-204ENST00000469207 CLPBQ9H078 707 aa12.46□□□□□ -0.41
HDAC3-204ENST00000469207 KLC2Q9H0B6 622 aa12.46□□□□□ -0.41
HDAC3-204ENST00000469207 PPARGC1AQ9UBK2 798 aaKnown RBP12.46□□□□□ -0.41
HDAC3-204ENST00000469207 PAXBP1Q9Y5B6 917 aa12.46□□□□□ -0.41
HDAC3-204ENST00000469207 ENTPD2Q9Y5L3 495 aa12.46□□□□□ -0.41
HDAC3-204ENST00000469207 COL27A1Q8IZC6 1860 aaPredicted RBP12.45□□□□□ -0.42
HDAC3-204ENST00000469207 EME2A4GXA9 379 aaPredicted RBP12.45□□□□□ -0.42
HDAC3-204ENST00000469207 PYCARD-AS1I3L0S3 204 aa12.45□□□□□ -0.42
HDAC3-204ENST00000469207 TSPAN6O43657 245 aa12.45□□□□□ -0.42
HDAC3-204ENST00000469207 GFPT2O94808 682 aa12.45□□□□□ -0.42
HDAC3-204ENST00000469207 LRIG2O94898 1065 aa12.45□□□□□ -0.42
HDAC3-204ENST00000469207 IGFALSP35858 605 aa12.45□□□□□ -0.42
HDAC3-204ENST00000469207 CFHR1Q03591 330 aa12.45□□□□□ -0.42
HDAC3-204ENST00000469207 MYLK3Q32MK0 819 aa12.45□□□□□ -0.42
HDAC3-204ENST00000469207 TAF1BQ53T94 588 aaPredicted RBP12.45□□□□□ -0.42
HDAC3-204ENST00000469207 ZNF805Q5CZA5 627 aa12.45□□□□□ -0.42
HDAC3-204ENST00000469207 PRRT3Q5FWE3 981 aa12.45□□□□□ -0.42
HDAC3-204ENST00000469207 MANEALQ5VSG8 457 aa12.45□□□□□ -0.42
HDAC3-204ENST00000469207 ZCCHC8Q6NZY4 707 aaKnown RBP12.45□□□□□ -0.42
HDAC3-204ENST00000469207 TTC7BQ86TV6 843 aa12.45□□□□□ -0.42
HDAC3-204ENST00000469207 PYROXD2Q8N2H3 581 aa12.45□□□□□ -0.42
HDAC3-204ENST00000469207 OR2AP1Q8NGE2 309 aa12.45□□□□□ -0.42
HDAC3-204ENST00000469207 EPS8L1Q8TE68 723 aa12.45□□□□□ -0.42
HDAC3-204ENST00000469207 KCNE4Q8WWG9 221 aa12.45□□□□□ -0.42
HDAC3-204ENST00000469207 IL12RB2Q99665 862 aa12.45□□□□□ -0.42
HDAC3-204ENST00000469207 STK33Q9BYT3 514 aa12.45□□□□□ -0.42
HDAC3-204ENST00000469207 NEU3Q9UQ49 428 aa12.45□□□□□ -0.42
HDAC3-204ENST00000469207 COQ6Q9Y2Z9 468 aa12.45□□□□□ -0.42
HDAC3-204ENST00000469207 HELZ2Q9BYK8 2649 aaKnown RBP12.45□□□□□ -0.42
HDAC3-204ENST00000469207 RP1P56715 2156 aa12.45□□□□□ -0.42
HDAC3-204ENST00000469207 KIF26BQ2KJY2 2108 aa12.44□□□□□ -0.42
HDAC3-204ENST00000469207 F8VZ95 297 aa12.44□□□□□ -0.42
HDAC3-204ENST00000469207 H3BM21 787 aa12.44□□□□□ -0.42
HDAC3-204ENST00000469207 AGRPO00253 132 aa12.44□□□□□ -0.42
HDAC3-204ENST00000469207 YY2O15391 372 aa12.44□□□□□ -0.42
HDAC3-204ENST00000469207 INSIG1O15503 277 aa12.44□□□□□ -0.42
HDAC3-204ENST00000469207 DXOO77932 396 aaKnown RBP12.44□□□□□ -0.42
HDAC3-204ENST00000469207 POP4O95707 220 aaKnown RBP12.44□□□□□ -0.42
HDAC3-204ENST00000469207 PLEKP08567 350 aaPredicted RBP12.44□□□□□ -0.42
HDAC3-204ENST00000469207 TIMP2P16035 220 aa12.44□□□□□ -0.42
HDAC3-204ENST00000469207 RHOQP17081 205 aa12.44□□□□□ -0.42
HDAC3-204ENST00000469207 ERVPABLB-1P60509 514 aa12.44□□□□□ -0.42
HDAC3-204ENST00000469207 UBE2HP62256 183 aa12.44□□□□□ -0.42
HDAC3-204ENST00000469207 FMO1Q01740 532 aa12.44□□□□□ -0.42
HDAC3-204ENST00000469207 KLHL40Q2TBA0 621 aa12.44□□□□□ -0.42
HDAC3-204ENST00000469207 SLC35F3Q8IY50 421 aa12.44□□□□□ -0.42
HDAC3-204ENST00000469207 LSMEM2Q8N112 164 aa12.44□□□□□ -0.42
HDAC3-204ENST00000469207 LSM14AQ8ND56 463 aaKnown RBP12.44□□□□□ -0.42
HDAC3-204ENST00000469207 FAM174AQ8TBP5 190 aa12.44□□□□□ -0.42
HDAC3-204ENST00000469207 ISG20Q96AZ6 181 aaKnown RBP12.44□□□□□ -0.42
HDAC3-204ENST00000469207 SLC46A1Q96NT5 459 aa12.44□□□□□ -0.42
HDAC3-204ENST00000469207 PCDHB18PQ96TA0 734 aa12.44□□□□□ -0.42
HDAC3-204ENST00000469207 C11orf70Q9BRQ4 267 aa12.44□□□□□ -0.42
HDAC3-204ENST00000469207 WRAP53Q9BUR4 548 aaKnown RBP12.44□□□□□ -0.42
HDAC3-204ENST00000469207 BOCQ9BWV1 1114 aa12.44□□□□□ -0.42
HDAC3-204ENST00000469207 NOL6Q9H6R4 1146 aaKnown RBP12.44□□□□□ -0.42
HDAC3-204ENST00000469207 TMEM248Q9NWD8 314 aa12.44□□□□□ -0.42
HDAC3-204ENST00000469207 TAB2Q9NYJ8 693 aa12.44□□□□□ -0.42
HDAC3-204ENST00000469207 APOBEC3BQ9UH17 382 aaKnown RBP12.44□□□□□ -0.42
HDAC3-204ENST00000469207 SALL4Q9UJQ4 1053 aa12.44□□□□□ -0.42
HDAC3-204ENST00000469207 NOCTQ9UK39 431 aaKnown RBP12.44□□□□□ -0.42
HDAC3-204ENST00000469207 CSNK1G3Q9Y6M4 447 aa12.44□□□□□ -0.42
HDAC3-204ENST00000469207 C2CD4BA6NLJ0 364 aa12.43□□□□□ -0.42
HDAC3-204ENST00000469207 AREL1O15033 823 aa12.43□□□□□ -0.42
HDAC3-204ENST00000469207 EPHB6O15197 1021 aa12.43□□□□□ -0.42
HDAC3-204ENST00000469207 BUB1O43683 1085 aa12.43□□□□□ -0.42
HDAC3-204ENST00000469207 KDELR3O43731 214 aa12.43□□□□□ -0.42
HDAC3-204ENST00000469207 GSRP00390 522 aa12.43□□□□□ -0.42
HDAC3-204ENST00000469207 CYP1A1P04798 512 aaPredicted RBP12.43□□□□□ -0.42
HDAC3-204ENST00000469207 TSHRP16473 764 aa12.43□□□□□ -0.42
HDAC3-204ENST00000469207 MMP8P22894 467 aa12.43□□□□□ -0.42
HDAC3-204ENST00000469207 SDC4P31431 198 aa12.43□□□□□ -0.42
HDAC3-204ENST00000469207 EIF4A3P38919 411 aaKnown RBP12.43□□□□□ -0.42
HDAC3-204ENST00000469207 THOP1P52888 689 aa12.43□□□□□ -0.42
HDAC3-204ENST00000469207 PDX1P52945 283 aa12.43□□□□□ -0.42
HDAC3-204ENST00000469207 HDAC4P56524 1084 aa12.43□□□□□ -0.42
HDAC3-204ENST00000469207 TMPRSS3P57727 454 aa12.43□□□□□ -0.42
HDAC3-204ENST00000469207 SNRPD1P62314 119 aaKnown RBP12.43□□□□□ -0.42
HDAC3-204ENST00000469207 PTP4A2Q12974 167 aa12.43□□□□□ -0.42
HDAC3-204ENST00000469207 POLD3Q15054 466 aaPredicted RBP12.43□□□□□ -0.42
HDAC3-204ENST00000469207 NR0B2Q15466 257 aa12.43□□□□□ -0.42
HDAC3-204ENST00000469207 ACBD5Q5T8D3 534 aaPredicted RBP12.43□□□□□ -0.42
HDAC3-204ENST00000469207 FAXCQ5TGI0 409 aa12.43□□□□□ -0.42
HDAC3-204ENST00000469207 BROXQ5VW32 411 aa12.43□□□□□ -0.42
HDAC3-204ENST00000469207 KIAA1614Q5VZ46 1190 aa12.43□□□□□ -0.42
HDAC3-204ENST00000469207 KCTD16Q68DU8 428 aa12.43□□□□□ -0.42
HDAC3-204ENST00000469207 GDPD4Q6W3E5 623 aa12.43□□□□□ -0.42
HDAC3-204ENST00000469207 ZNF354CQ86Y25 554 aa12.43□□□□□ -0.42
HDAC3-204ENST00000469207 PLPP6Q8IY26 295 aa12.43□□□□□ -0.42
HDAC3-204ENST00000469207 PHACTR4Q8IZ21 702 aa12.43□□□□□ -0.42
HDAC3-204ENST00000469207 TP53I13Q8NBR0 393 aaPredicted RBP12.43□□□□□ -0.42
HDAC3-204ENST00000469207 TSACCQ96A04 125 aaPredicted RBP12.43□□□□□ -0.42
HDAC3-204ENST00000469207 EXOC2Q96KP1 924 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms