RNA–Protein interactions for RNA: ENST00000467819.5

COL9A3-207, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL9A3, Length 993 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-207ENST00000467819 KLF15Q9UIH9 416 aa21.39■■□□□ 1.01
COL9A3-207ENST00000467819 RAI2Q9Y5P3 530 aa21.39■■□□□ 1.01
COL9A3-207ENST00000467819 U3KQA8 63 aa21.39■■□□□ 1.01
COL9A3-207ENST00000467819 CXorf51AA0A1B0GTR3 108 aa21.38■■□□□ 1.01
COL9A3-207ENST00000467819 SPINT1O43278 529 aa21.38■■□□□ 1.01
COL9A3-207ENST00000467819 UNGP13051 313 aaPredicted RBP21.38■■□□□ 1.01
COL9A3-207ENST00000467819 NME1P15531 152 aaKnown RBP21.38■■□□□ 1.01
COL9A3-207ENST00000467819 GPD1P21695 349 aa21.38■■□□□ 1.01
COL9A3-207ENST00000467819 RFC1P35251 1148 aaPredicted RBP21.38■■□□□ 1.01
COL9A3-207ENST00000467819 DUSP3P51452 185 aaPredicted RBP21.38■■□□□ 1.01
COL9A3-207ENST00000467819 CCDC173Q0VFZ6 552 aa21.38■■□□□ 1.01
COL9A3-207ENST00000467819 MYLK3Q32MK0 819 aa21.38■■□□□ 1.01
COL9A3-207ENST00000467819 TBC1D25Q3MII6 688 aa21.38■■□□□ 1.01
COL9A3-207ENST00000467819 PYROXD2Q8N2H3 581 aa21.38■■□□□ 1.01
COL9A3-207ENST00000467819 FAM181AQ8N9Y4 354 aa21.38■■□□□ 1.01
COL9A3-207ENST00000467819 NETO2Q8NC67 525 aa21.38■■□□□ 1.01
COL9A3-207ENST00000467819 IFI44Q8TCB0 444 aa21.38■■□□□ 1.01
COL9A3-207ENST00000467819 SEPT11Q9NVA2 429 aaKnown RBP21.38■■□□□ 1.01
COL9A3-207ENST00000467819 EVA1BQ9NVM1 165 aa21.38■■□□□ 1.01
COL9A3-207ENST00000467819 SIK3Q9Y2K2 1263 aa21.38■■□□□ 1.01
COL9A3-207ENST00000467819 COL27A1Q8IZC6 1860 aaPredicted RBP21.38■■□□□ 1.01
COL9A3-207ENST00000467819 ANKRD36A6QL64 1941 aa21.37■■□□□ 1.01
COL9A3-207ENST00000467819 AQP9O43315 295 aa21.37■■□□□ 1.01
COL9A3-207ENST00000467819 BUB1O43683 1085 aa21.37■■□□□ 1.01
COL9A3-207ENST00000467819 KDELR3O43731 214 aa21.37■■□□□ 1.01
COL9A3-207ENST00000467819 TMCC1O94876 653 aa21.37■■□□□ 1.01
COL9A3-207ENST00000467819 POP4O95707 220 aaKnown RBP21.37■■□□□ 1.01
COL9A3-207ENST00000467819 JUNDP17535 347 aa21.37■■□□□ 1.01
COL9A3-207ENST00000467819 SYCP1Q15431 976 aa21.37■■□□□ 1.01
COL9A3-207ENST00000467819 CLEC16AQ2KHT3 1053 aa21.37■■□□□ 1.01
COL9A3-207ENST00000467819 DEFB133Q30KQ1 61 aa21.37■■□□□ 1.01
COL9A3-207ENST00000467819 CDCP2Q5VXM1 449 aa21.37■■□□□ 1.01
COL9A3-207ENST00000467819 WDR59Q6PJI9 974 aa21.37■■□□□ 1.01
COL9A3-207ENST00000467819 DENND6BQ8NEG7 585 aa21.37■■□□□ 1.01
COL9A3-207ENST00000467819 MAPK15Q8TD08 544 aa21.37■■□□□ 1.01
COL9A3-207ENST00000467819 LMX1AQ8TE12 382 aa21.37■■□□□ 1.01
COL9A3-207ENST00000467819 NTAN1Q96AB6 310 aa21.37■■□□□ 1.01
COL9A3-207ENST00000467819 VOPP1Q96AW1 172 aa21.37■■□□□ 1.01
COL9A3-207ENST00000467819 DEPDC7Q96QD5 511 aa21.37■■□□□ 1.01
COL9A3-207ENST00000467819 UBL7Q96S82 380 aaPredicted RBP21.37■■□□□ 1.01
COL9A3-207ENST00000467819 OSBPL1AQ9BXW6 950 aa21.37■■□□□ 1.01
COL9A3-207ENST00000467819 ABCG4Q9H172 646 aa21.37■■□□□ 1.01
COL9A3-207ENST00000467819 PRORYQ9H606 182 aa21.37■■□□□ 1.01
COL9A3-207ENST00000467819 FANCLQ9NW38 375 aa21.37■■□□□ 1.01
COL9A3-207ENST00000467819 KIF26BQ2KJY2 2108 aa21.37■■□□□ 1.01
COL9A3-207ENST00000467819 CSO75390 466 aaKnown RBP21.36■■□□□ 1.01
COL9A3-207ENST00000467819 MPOP05164 745 aa21.36■■□□□ 1.01
COL9A3-207ENST00000467819 CALB1P05937 261 aa21.36■■□□□ 1.01
COL9A3-207ENST00000467819 GP1BAP07359 652 aa21.36■■□□□ 1.01
COL9A3-207ENST00000467819 COPB1P53618 953 aaKnown RBP21.36■■□□□ 1.01
COL9A3-207ENST00000467819 GSCP56915 257 aaPredicted RBP21.36■■□□□ 1.01
COL9A3-207ENST00000467819 PFN3P60673 137 aa21.36■■□□□ 1.01
COL9A3-207ENST00000467819 CDKN3Q16667 212 aa21.36■■□□□ 1.01
COL9A3-207ENST00000467819 ZCCHC8Q6NZY4 707 aaKnown RBP21.36■■□□□ 1.01
COL9A3-207ENST00000467819 SCYL2Q6P3W7 929 aa21.36■■□□□ 1.01
COL9A3-207ENST00000467819 GDPD4Q6W3E5 623 aa21.36■■□□□ 1.01
COL9A3-207ENST00000467819 SLFN11Q7Z7L1 901 aa21.36■■□□□ 1.01
COL9A3-207ENST00000467819 TTC7BQ86TV6 843 aa21.36■■□□□ 1.01
COL9A3-207ENST00000467819 VPS36Q86VN1 386 aa21.36■■□□□ 1.01
COL9A3-207ENST00000467819 NEK11Q8NG66 645 aa21.36■■□□□ 1.01
COL9A3-207ENST00000467819 ASB12Q8WXK4 309 aa21.36■■□□□ 1.01
COL9A3-207ENST00000467819 ARHGEF26Q96DR7 871 aa21.36■■□□□ 1.01
COL9A3-207ENST00000467819 GDAP1L1Q96MZ0 367 aa21.36■■□□□ 1.01
COL9A3-207ENST00000467819 FCRL3Q96P31 734 aaPredicted RBP21.36■■□□□ 1.01
COL9A3-207ENST00000467819 KLC2Q9H0B6 622 aa21.36■■□□□ 1.01
COL9A3-207ENST00000467819 NOL6Q9H6R4 1146 aaKnown RBP21.36■■□□□ 1.01
COL9A3-207ENST00000467819 USP29Q9HBJ7 922 aa21.36■■□□□ 1.01
COL9A3-207ENST00000467819 DAAM1Q9Y4D1 1078 aa21.36■■□□□ 1.01
COL9A3-207ENST00000467819 CPED1A4D0V7 1026 aa21.35■■□□□ 1.01
COL9A3-207ENST00000467819 ZSCAN5CA6NGD5 496 aaPredicted RBP21.35■■□□□ 1.01
COL9A3-207ENST00000467819 CCP110O43303 1012 aa21.35■■□□□ 1.01
COL9A3-207ENST00000467819 USP12O75317 370 aa21.35■■□□□ 1.01
COL9A3-207ENST00000467819 IGSF6O95976 241 aa21.35■■□□□ 1.01
COL9A3-207ENST00000467819 EPHB2P29323 1055 aa21.35■■□□□ 1.01
COL9A3-207ENST00000467819 IGFALSP35858 605 aa21.35■■□□□ 1.01
COL9A3-207ENST00000467819 RHOAP61586 193 aa21.35■■□□□ 1.01
COL9A3-207ENST00000467819 EIF2B5Q13144 721 aaKnown RBP21.35■■□□□ 1.01
COL9A3-207ENST00000467819 EFHC2Q5JST6 749 aa21.35■■□□□ 1.01
COL9A3-207ENST00000467819 PHF13Q86YI8 300 aaPredicted RBP21.35■■□□□ 1.01
COL9A3-207ENST00000467819 RBFAQ8N0V3 343 aa21.35■■□□□ 1.01
COL9A3-207ENST00000467819 RTL3Q8N8U3 475 aaKnown RBP21.35■■□□□ 1.01
COL9A3-207ENST00000467819 C3orf20Q8ND61 904 aa21.35■■□□□ 1.01
COL9A3-207ENST00000467819 TCEAL2Q9H3H9 227 aaPredicted RBP21.35■■□□□ 1.01
COL9A3-207ENST00000467819 LMBRD1Q9NUN5 540 aa21.35■■□□□ 1.01
COL9A3-207ENST00000467819 CSNK1G3Q9Y6M4 447 aa21.35■■□□□ 1.01
COL9A3-207ENST00000467819 AREL1O15033 823 aa21.34■■□□□ 1.01
COL9A3-207ENST00000467819 CREB3O43889 395 aa21.34■■□□□ 1.01
COL9A3-207ENST00000467819 MMP20O60882 483 aa21.34■■□□□ 1.01
COL9A3-207ENST00000467819 ITIH2P19823 946 aa21.34■■□□□ 1.01
COL9A3-207ENST00000467819 THOP1P52888 689 aa21.34■■□□□ 1.01
COL9A3-207ENST00000467819 GABREP78334 506 aa21.34■■□□□ 1.01
COL9A3-207ENST00000467819 RAD51Q06609 339 aa21.34■■□□□ 1.01
COL9A3-207ENST00000467819 DNAJC24Q6P3W2 148 aa21.34■■□□□ 1.01
COL9A3-207ENST00000467819 GUSBP11Q6P575 273 aa21.34■■□□□ 1.01
COL9A3-207ENST00000467819 MON1BQ7L1V2 547 aa21.34■■□□□ 1.01
COL9A3-207ENST00000467819 EFL1Q7Z2Z2 1120 aaKnown RBP21.34■■□□□ 1.01
COL9A3-207ENST00000467819 CXorf40AQ8TE69 158 aa21.34■■□□□ 1.01
COL9A3-207ENST00000467819 HMCESQ96FZ2 354 aa21.34■■□□□ 1.01
COL9A3-207ENST00000467819 NAF1Q96HR8 494 aaKnown RBP21.34■■□□□ 1.01
COL9A3-207ENST00000467819 LGMNQ99538 433 aa21.34■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms