RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 CAPNS1P04632 268 aa18.03■□□□□ 0.48
COL7A1-205ENST00000465238 CD48P09326 243 aa18.03■□□□□ 0.48
COL7A1-205ENST00000465238 KDELR1P24390 212 aa18.03■□□□□ 0.48
COL7A1-205ENST00000465238 PSMD8P48556 350 aa18.03■□□□□ 0.48
COL7A1-205ENST00000465238 VASPP50552 380 aaPredicted RBP18.03■□□□□ 0.48
COL7A1-205ENST00000465238 CCR5P51681 352 aa18.03■□□□□ 0.48
COL7A1-205ENST00000465238 ARSEP51690 589 aa18.03■□□□□ 0.48
COL7A1-205ENST00000465238 DPYSL3Q14195 570 aa18.03■□□□□ 0.48
COL7A1-205ENST00000465238 INAVAQ3KP66 663 aa18.03■□□□□ 0.48
COL7A1-205ENST00000465238 TMCO3Q6UWJ1 677 aa18.03■□□□□ 0.48
COL7A1-205ENST00000465238 STK40Q8N2I9 435 aa18.03■□□□□ 0.48
COL7A1-205ENST00000465238 LZTR1Q8N653 840 aa18.03■□□□□ 0.48
COL7A1-205ENST00000465238 ATP11CQ8NB49 1132 aa18.03■□□□□ 0.48
COL7A1-205ENST00000465238 TSC1Q92574 1164 aa18.03■□□□□ 0.48
COL7A1-205ENST00000465238 PDLIM2Q96JY6 352 aa18.03■□□□□ 0.48
COL7A1-205ENST00000465238 NOL6Q9H6R4 1146 aaKnown RBP18.03■□□□□ 0.48
COL7A1-205ENST00000465238 TOR4AQ9NXH8 423 aa18.03■□□□□ 0.48
COL7A1-205ENST00000465238 TRIM10Q9UDY6 481 aa18.03■□□□□ 0.48
COL7A1-205ENST00000465238 BTBD3Q9Y2F9 522 aa18.03■□□□□ 0.48
COL7A1-205ENST00000465238 SBDSQ9Y3A5 250 aaKnown RBP eCLIP18.03■□□□□ 0.48
COL7A1-205ENST00000465238 ACACAQ13085 2346 aa18.03■□□□□ 0.48
COL7A1-205ENST00000465238 A0A0U1RQJ8 604 aa18.02■□□□□ 0.48
COL7A1-205ENST00000465238 ARHGAP42A6NI28 874 aa18.02■□□□□ 0.48
COL7A1-205ENST00000465238 C10orf142B7Z368 130 aa18.02■□□□□ 0.48
COL7A1-205ENST00000465238 KCNK3O14649 394 aa18.02■□□□□ 0.48
COL7A1-205ENST00000465238 PSTPIP1O43586 416 aa18.02■□□□□ 0.48
COL7A1-205ENST00000465238 KDELR3O43731 214 aa18.02■□□□□ 0.48
COL7A1-205ENST00000465238 ZMPSTE24O75844 475 aa18.02■□□□□ 0.48
COL7A1-205ENST00000465238 DKK1O94907 266 aa18.02■□□□□ 0.48
COL7A1-205ENST00000465238 KRT1P04264 644 aa18.02■□□□□ 0.48
COL7A1-205ENST00000465238 ATXN1LP0C7T5 689 aaKnown RBP18.02■□□□□ 0.48
COL7A1-205ENST00000465238 GLDCP23378 1020 aa18.02■□□□□ 0.48
COL7A1-205ENST00000465238 IL4RP24394 825 aa18.02■□□□□ 0.48
COL7A1-205ENST00000465238 GEMIN4P57678 1058 aaKnown RBP18.02■□□□□ 0.48
COL7A1-205ENST00000465238 MMRN1Q13201 1228 aa18.02■□□□□ 0.48
COL7A1-205ENST00000465238 LINGO4Q6UY18 593 aa18.02■□□□□ 0.48
COL7A1-205ENST00000465238 PROSER1Q86XN7 944 aa18.02■□□□□ 0.48
COL7A1-205ENST00000465238 SH2D3CQ8N5H7 860 aa18.02■□□□□ 0.48
COL7A1-205ENST00000465238 RNF10Q8N5U6 811 aaKnown RBP18.02■□□□□ 0.48
COL7A1-205ENST00000465238 AADATQ8N5Z0 425 aa18.02■□□□□ 0.48
COL7A1-205ENST00000465238 RAPGEF5Q92565 580 aa18.02■□□□□ 0.48
COL7A1-205ENST00000465238 CELF6Q96J87 481 aaKnown RBP18.02■□□□□ 0.48
COL7A1-205ENST00000465238 SLC6A18Q96N87 628 aa18.02■□□□□ 0.48
COL7A1-205ENST00000465238 ZNF670Q9BS34 389 aa18.02■□□□□ 0.48
COL7A1-205ENST00000465238 RALYQ9UKM9 306 aaKnown RBP18.02■□□□□ 0.48
COL7A1-205ENST00000465238 HS3ST2Q9Y278 367 aa18.02■□□□□ 0.48
COL7A1-205ENST00000465238 GOLGA4Q13439 2230 aaKnown RBP18.02■□□□□ 0.47
COL7A1-205ENST00000465238 CACNA1GO43497 2377 aa18.01■□□□□ 0.47
COL7A1-205ENST00000465238 ITPR1Q14643 2758 aa18.01■□□□□ 0.47
COL7A1-205ENST00000465238 CXorf51AA0A1B0GTR3 108 aa18.01■□□□□ 0.47
COL7A1-205ENST00000465238 ZSCAN5CA6NGD5 496 aaPredicted RBP18.01■□□□□ 0.47
COL7A1-205ENST00000465238 TNFSF14O43557 240 aa18.01■□□□□ 0.47
COL7A1-205ENST00000465238 ATP9BO43861 1147 aa18.01■□□□□ 0.47
COL7A1-205ENST00000465238 MT-CO1P00395 513 aa18.01■□□□□ 0.47
COL7A1-205ENST00000465238 IL1BP01584 269 aa18.01■□□□□ 0.47
COL7A1-205ENST00000465238 SERPINB6P35237 376 aa18.01■□□□□ 0.47
COL7A1-205ENST00000465238 CLCN6P51797 869 aa18.01■□□□□ 0.47
COL7A1-205ENST00000465238 ADPRHP54922 357 aa18.01■□□□□ 0.47
COL7A1-205ENST00000465238 SERINC3Q13530 473 aa18.01■□□□□ 0.47
COL7A1-205ENST00000465238 DLG2Q15700 870 aa18.01■□□□□ 0.47
COL7A1-205ENST00000465238 ANKRD20A8PQ5CZ79 823 aa18.01■□□□□ 0.47
COL7A1-205ENST00000465238 TMPRSS7Q7RTY8 843 aa18.01■□□□□ 0.47
COL7A1-205ENST00000465238 DSG4Q86SJ6 1040 aa18.01■□□□□ 0.47
COL7A1-205ENST00000465238 SYCE1Q8N0S2 351 aa18.01■□□□□ 0.47
COL7A1-205ENST00000465238 OR14C36Q8NHC7 312 aa18.01■□□□□ 0.47
COL7A1-205ENST00000465238 RNF25Q96BH1 459 aaPredicted RBP18.01■□□□□ 0.47
COL7A1-205ENST00000465238 HMCESQ96FZ2 354 aa18.01■□□□□ 0.47
COL7A1-205ENST00000465238 MAK16Q9BXY0 300 aaKnown RBP18.01■□□□□ 0.47
COL7A1-205ENST00000465238 SLC39A8Q9C0K1 460 aa18.01■□□□□ 0.47
COL7A1-205ENST00000465238 KLC2Q9H0B6 622 aa18.01■□□□□ 0.47
COL7A1-205ENST00000465238 LRRC19Q9H756 370 aa18.01■□□□□ 0.47
COL7A1-205ENST00000465238 EBF2Q9HAK2 575 aa18.01■□□□□ 0.47
COL7A1-205ENST00000465238 ETNK2Q9NVF9 386 aa18.01■□□□□ 0.47
COL7A1-205ENST00000465238 GUCA1BQ9UMX6 200 aa18.01■□□□□ 0.47
COL7A1-205ENST00000465238 NBEAQ8NFP9 2946 aa18.01■□□□□ 0.47
COL7A1-205ENST00000465238 A0A1B0GTQ1 180 aa18■□□□□ 0.47
COL7A1-205ENST00000465238 GRID2IPA4D2P6 1211 aa18■□□□□ 0.47
COL7A1-205ENST00000465238 TAF4O00268 1085 aa18■□□□□ 0.47
COL7A1-205ENST00000465238 DFFAO00273 331 aa18■□□□□ 0.47
COL7A1-205ENST00000465238 SRCP12931 536 aa18■□□□□ 0.47
COL7A1-205ENST00000465238 CD38P28907 300 aa18■□□□□ 0.47
COL7A1-205ENST00000465238 PAPOLAP51003 745 aaKnown RBP18■□□□□ 0.47
COL7A1-205ENST00000465238 ARF5P84085 180 aa18■□□□□ 0.47
COL7A1-205ENST00000465238 PCDH19Q8TAB3 1148 aa18■□□□□ 0.47
COL7A1-205ENST00000465238 FRS2Q8WU20 508 aa18■□□□□ 0.47
COL7A1-205ENST00000465238 ELF4Q99607 663 aaPredicted RBP18■□□□□ 0.47
COL7A1-205ENST00000465238 CCDC86Q9H6F5 360 aaKnown RBP18■□□□□ 0.47
COL7A1-205ENST00000465238 AASDHPPTQ9NRN7 309 aa18■□□□□ 0.47
COL7A1-205ENST00000465238 APC2O95996 2303 aa18■□□□□ 0.47
COL7A1-205ENST00000465238 K7ERQ8 282 aa17.99■□□□□ 0.47
COL7A1-205ENST00000465238 PALMO75781 387 aa17.99■□□□□ 0.47
COL7A1-205ENST00000465238 VAV1P15498 845 aa17.99■□□□□ 0.47
COL7A1-205ENST00000465238 DRD3P35462 400 aa17.99■□□□□ 0.47
COL7A1-205ENST00000465238 SERPINH1P50454 418 aaKnown RBP17.99■□□□□ 0.47
COL7A1-205ENST00000465238 SLC45A4Q5BKX6 768 aa17.99■□□□□ 0.47
COL7A1-205ENST00000465238 FAM46CQ5VWP2 391 aa17.99■□□□□ 0.47
COL7A1-205ENST00000465238 AFMIDQ63HM1 303 aa17.99■□□□□ 0.47
COL7A1-205ENST00000465238 LEKR1Q6ZMV7 388 aa17.99■□□□□ 0.47
COL7A1-205ENST00000465238 PEX26Q7Z412 305 aa17.99■□□□□ 0.47
COL7A1-205ENST00000465238 VSIG1Q86XK7 387 aa17.99■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms