RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 PLEKP08567 350 aaPredicted RBP16.34■□□□□ 0.21
COL7A1-204ENST00000462475 JUNDP17535 347 aa16.34■□□□□ 0.21
COL7A1-204ENST00000462475 SOX5P35711 763 aa16.34■□□□□ 0.21
COL7A1-204ENST00000462475 DUSP3P51452 185 aaPredicted RBP16.34■□□□□ 0.21
COL7A1-204ENST00000462475 GEMIN4P57678 1058 aaKnown RBP16.34■□□□□ 0.21
COL7A1-204ENST00000462475 PFN3P60673 137 aa16.34■□□□□ 0.21
COL7A1-204ENST00000462475 SNRPD1P62314 119 aaKnown RBP16.34■□□□□ 0.21
COL7A1-204ENST00000462475 POLD3Q15054 466 aaPredicted RBP16.34■□□□□ 0.21
COL7A1-204ENST00000462475 CDKN3Q16667 212 aa16.34■□□□□ 0.21
COL7A1-204ENST00000462475 DEFB133Q30KQ1 61 aa16.34■□□□□ 0.21
COL7A1-204ENST00000462475 GUSBP11Q6P575 273 aa16.34■□□□□ 0.21
COL7A1-204ENST00000462475 STRADAQ7RTN6 431 aa16.34■□□□□ 0.21
COL7A1-204ENST00000462475 RBFAQ8N0V3 343 aa16.34■□□□□ 0.21
COL7A1-204ENST00000462475 NETO2Q8NC67 525 aa16.34■□□□□ 0.21
COL7A1-204ENST00000462475 MAPK15Q8TD08 544 aa16.34■□□□□ 0.21
COL7A1-204ENST00000462475 LMX1AQ8TE12 382 aa16.34■□□□□ 0.21
COL7A1-204ENST00000462475 FAM172AQ8WUF8 416 aa16.34■□□□□ 0.21
COL7A1-204ENST00000462475 SLC39A7Q92504 469 aa16.34■□□□□ 0.21
COL7A1-204ENST00000462475 CENPIQ92674 756 aaPredicted RBP16.34■□□□□ 0.21
COL7A1-204ENST00000462475 NAF1Q96HR8 494 aaKnown RBP16.34■□□□□ 0.21
COL7A1-204ENST00000462475 KLHL32Q96NJ5 620 aa16.34■□□□□ 0.21
COL7A1-204ENST00000462475 PCDHB18PQ96TA0 734 aa16.34■□□□□ 0.21
COL7A1-204ENST00000462475 LGMNQ99538 433 aa16.34■□□□□ 0.21
COL7A1-204ENST00000462475 TCEAL2Q9H3H9 227 aaPredicted RBP16.34■□□□□ 0.21
COL7A1-204ENST00000462475 NLRC4Q9NPP4 1024 aa16.34■□□□□ 0.21
COL7A1-204ENST00000462475 CHMP5Q9NZZ3 219 aa16.34■□□□□ 0.21
COL7A1-204ENST00000462475 PNMA8BQ9ULN7 279 aaPredicted RBP16.34■□□□□ 0.21
COL7A1-204ENST00000462475 CSNK1G3Q9Y6M4 447 aa16.34■□□□□ 0.21
COL7A1-204ENST00000462475 TDRD6O60522 2096 aaKnown RBP16.34■□□□□ 0.21
COL7A1-204ENST00000462475 AREL1O15033 823 aa16.33■□□□□ 0.2
COL7A1-204ENST00000462475 TMCC1O94876 653 aa16.33■□□□□ 0.2
COL7A1-204ENST00000462475 UNGP13051 313 aaPredicted RBP16.33■□□□□ 0.2
COL7A1-204ENST00000462475 TGM2P21980 687 aa16.33■□□□□ 0.2
COL7A1-204ENST00000462475 IGFALSP35858 605 aa16.33■□□□□ 0.2
COL7A1-204ENST00000462475 PCBP4P57723 403 aaKnown RBP16.33■□□□□ 0.2
COL7A1-204ENST00000462475 KRT31Q15323 416 aa16.33■□□□□ 0.2
COL7A1-204ENST00000462475 MYLK3Q32MK0 819 aa16.33■□□□□ 0.2
COL7A1-204ENST00000462475 CDKAL1Q5VV42 579 aa16.33■□□□□ 0.2
COL7A1-204ENST00000462475 EFL1Q7Z2Z2 1120 aaKnown RBP16.33■□□□□ 0.2
COL7A1-204ENST00000462475 GPR155Q7Z3F1 870 aa16.33■□□□□ 0.2
COL7A1-204ENST00000462475 VPS36Q86VN1 386 aa16.33■□□□□ 0.2
COL7A1-204ENST00000462475 ASB12Q8WXK4 309 aa16.33■□□□□ 0.2
COL7A1-204ENST00000462475 NTAN1Q96AB6 310 aa16.33■□□□□ 0.2
COL7A1-204ENST00000462475 HIC2Q96JB3 615 aa16.33■□□□□ 0.2
COL7A1-204ENST00000462475 OSBPL1AQ9BXW6 950 aa16.33■□□□□ 0.2
COL7A1-204ENST00000462475 KLC2Q9H0B6 622 aa16.33■□□□□ 0.2
COL7A1-204ENST00000462475 ABCG4Q9H172 646 aa16.33■□□□□ 0.2
COL7A1-204ENST00000462475 RETREG1Q9H6L5 497 aa16.33■□□□□ 0.2
COL7A1-204ENST00000462475 NOL6Q9H6R4 1146 aaKnown RBP16.33■□□□□ 0.2
COL7A1-204ENST00000462475 EVA1BQ9NVM1 165 aa16.33■□□□□ 0.2
COL7A1-204ENST00000462475 HPCAL4Q9UM19 191 aa16.33■□□□□ 0.2
COL7A1-204ENST00000462475 CFAP46Q8IYW2 2715 aa16.33■□□□□ 0.2
COL7A1-204ENST00000462475 HELZ2Q9BYK8 2649 aaKnown RBP16.32■□□□□ 0.2
COL7A1-204ENST00000462475 CPED1A4D0V7 1026 aa16.32■□□□□ 0.2
COL7A1-204ENST00000462475 BUB1O43683 1085 aa16.32■□□□□ 0.2
COL7A1-204ENST00000462475 KDELR3O43731 214 aa16.32■□□□□ 0.2
COL7A1-204ENST00000462475 DXOO77932 396 aaKnown RBP16.32■□□□□ 0.2
COL7A1-204ENST00000462475 POP4O95707 220 aaKnown RBP16.32■□□□□ 0.2
COL7A1-204ENST00000462475 KRT3P12035 628 aa16.32■□□□□ 0.2
COL7A1-204ENST00000462475 ITIH2P19823 946 aa16.32■□□□□ 0.2
COL7A1-204ENST00000462475 RFC1P35251 1148 aaPredicted RBP16.32■□□□□ 0.2
COL7A1-204ENST00000462475 CXADRP78310 365 aa16.32■□□□□ 0.2
COL7A1-204ENST00000462475 ATMQ13315 3056 aa16.32■□□□□ 0.2
COL7A1-204ENST00000462475 ISXQ2M1V0 245 aa16.32■□□□□ 0.2
COL7A1-204ENST00000462475 CRTC1Q6UUV9 634 aa16.32■□□□□ 0.2
COL7A1-204ENST00000462475 GDPD4Q6W3E5 623 aa16.32■□□□□ 0.2
COL7A1-204ENST00000462475 TRIM72Q6ZMU5 477 aa16.32■□□□□ 0.2
COL7A1-204ENST00000462475 ZNF354CQ86Y25 554 aa16.32■□□□□ 0.2
COL7A1-204ENST00000462475 PYROXD2Q8N2H3 581 aa16.32■□□□□ 0.2
COL7A1-204ENST00000462475 ZNF248Q8NDW4 579 aa16.32■□□□□ 0.2
COL7A1-204ENST00000462475 ENOX1Q8TC92 643 aaKnown RBP16.32■□□□□ 0.2
COL7A1-204ENST00000462475 CENPTQ96BT3 561 aa16.32■□□□□ 0.2
COL7A1-204ENST00000462475 GDAP1L1Q96MZ0 367 aa16.32■□□□□ 0.2
COL7A1-204ENST00000462475 ZNF578Q96N58 590 aaPredicted RBP16.32■□□□□ 0.2
COL7A1-204ENST00000462475 POLR1BQ9H9Y6 1135 aa16.32■□□□□ 0.2
COL7A1-204ENST00000462475 APOBEC3BQ9UH17 382 aaKnown RBP16.32■□□□□ 0.2
COL7A1-204ENST00000462475 CHD5Q8TDI0 1954 aa16.31■□□□□ 0.2
COL7A1-204ENST00000462475 A0A1W2PNU3 283 aaPredicted RBP16.31■□□□□ 0.2
COL7A1-204ENST00000462475 EME2A4GXA9 379 aaPredicted RBP16.31■□□□□ 0.2
COL7A1-204ENST00000462475 TK2O00142 265 aa16.31■□□□□ 0.2
COL7A1-204ENST00000462475 CASC3O15234 703 aaKnown RBP16.31■□□□□ 0.2
COL7A1-204ENST00000462475 LZTS3O60299 673 aaPredicted RBP16.31■□□□□ 0.2
COL7A1-204ENST00000462475 MMP20O60882 483 aa16.31■□□□□ 0.2
COL7A1-204ENST00000462475 GCATO75600 419 aa16.31■□□□□ 0.2
COL7A1-204ENST00000462475 GPD1P21695 349 aa16.31■□□□□ 0.2
COL7A1-204ENST00000462475 NSFP46459 744 aaKnown RBP16.31■□□□□ 0.2
COL7A1-204ENST00000462475 LSSP48449 732 aa16.31■□□□□ 0.2
COL7A1-204ENST00000462475 THOP1P52888 689 aa16.31■□□□□ 0.2
COL7A1-204ENST00000462475 GSCP56915 257 aaPredicted RBP16.31■□□□□ 0.2
COL7A1-204ENST00000462475 C1orf61Q13536 156 aa16.31■□□□□ 0.2
COL7A1-204ENST00000462475 CLEC16AQ2KHT3 1053 aa16.31■□□□□ 0.2
COL7A1-204ENST00000462475 CT47A1Q5JQC4 288 aaPredicted RBP16.31■□□□□ 0.2
COL7A1-204ENST00000462475 WDR59Q6PJI9 974 aa16.31■□□□□ 0.2
COL7A1-204ENST00000462475 TTC7BQ86TV6 843 aa16.31■□□□□ 0.2
COL7A1-204ENST00000462475 PHACTR4Q8IZ21 702 aa16.31■□□□□ 0.2
COL7A1-204ENST00000462475 RTL3Q8N8U3 475 aaKnown RBP16.31■□□□□ 0.2
COL7A1-204ENST00000462475 ARHGEF26Q96DR7 871 aa16.31■□□□□ 0.2
COL7A1-204ENST00000462475 IL12RB2Q99665 862 aa16.31■□□□□ 0.2
COL7A1-204ENST00000462475 LRRC61Q9BV99 259 aa16.31■□□□□ 0.2
COL7A1-204ENST00000462475 SELENOOQ9BVL4 669 aa16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms