RNA–Protein interactions for RNA: ENST00000460333.5

VPS13D-202, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 4,910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-202ENST00000460333 RECQLP46063 649 aaPredicted RBP6.26□□□□□ -1.41
VPS13D-202ENST00000460333 CDK9P50750 372 aaKnown RBP6.26□□□□□ -1.41
VPS13D-202ENST00000460333 ZNF132P52740 706 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 IL5RAQ01344 420 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 SLC6A3Q01959 620 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 CDK18Q07002 472 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 FASTKQ14296 549 aaKnown RBP6.26□□□□□ -1.41
VPS13D-202ENST00000460333 TSC22D1Q15714 1073 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 CCL14Q16627 93 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 NRF1Q16656 503 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 ZFP69Q49AA0 526 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 NAPEPLDQ6IQ20 393 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 UNC45BQ8IWX7 931 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 DIS3LQ8TF46 1054 aaKnown RBP6.26□□□□□ -1.41
VPS13D-202ENST00000460333 TAMM41Q96BW9 452 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 ATXN7L3BQ96GX2 97 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 HAPLN2Q9GZV7 340 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 NEUROG2Q9H2A3 272 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 CACNA2D2Q9NY47 1150 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 UBA2Q9UBT2 640 aaPredicted RBP6.26□□□□□ -1.41
VPS13D-202ENST00000460333 ENOPH1Q9UHY7 261 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 CDH22Q9UJ99 828 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 SLC13A4Q9UKG4 626 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 USP18Q9UMW8 372 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 COL11A1P12107 1806 aaPredicted RBP6.26□□□□□ -1.41
VPS13D-202ENST00000460333 SMIM28A0A1B0GU29 152 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 TRAFD1O14545 582 aaPredicted RBP6.26□□□□□ -1.41
VPS13D-202ENST00000460333 CHADO15335 359 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 CD3EAPO15446 510 aaKnown RBP6.26□□□□□ -1.41
VPS13D-202ENST00000460333 PGK1P00558 417 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 PABPC4LP0CB38 370 aaKnown RBP6.26□□□□□ -1.41
VPS13D-202ENST00000460333 PRKAR2AP13861 404 aaKnown RBP6.26□□□□□ -1.41
VPS13D-202ENST00000460333 CHKAP35790 457 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 LBX1P52954 281 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 ORC1Q13415 861 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 MSLNQ13421 630 aaPredicted RBP6.26□□□□□ -1.41
VPS13D-202ENST00000460333 SQLEQ14534 574 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 METTL21CQ5VZV1 264 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 IKBIPQ70UQ0 350 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 DCP1BQ8IZD4 617 aaKnown RBP6.26□□□□□ -1.41
VPS13D-202ENST00000460333 ANKRD52Q8NB46 1076 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 SLC4A11Q8NBS3 891 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 RXFP2Q8WXD0 754 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 ZNF669Q96BR6 464 aaPredicted RBP6.26□□□□□ -1.41
VPS13D-202ENST00000460333 HHIPL1Q96JK4 782 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 FAM84AQ96KN4 292 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 AGAP3Q96P47 875 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 ASB2Q96Q27 587 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 YTHDF1Q9BYJ9 559 aaKnown RBP6.26□□□□□ -1.41
VPS13D-202ENST00000460333 UBE2OQ9C0C9 1292 aaKnown RBP6.26□□□□□ -1.41
VPS13D-202ENST00000460333 MUC13Q9H3R2 512 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 CHST7Q9NS84 486 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 CNTN3Q9P232 1028 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 TMEM59LQ9UK28 342 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 SLC39A10Q9ULF5 831 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 ST3GAL5Q9UNP4 418 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 NDUFAF1Q9Y375 327 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 PTPRJQ12913 1337 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 MAGEB16A2A368 324 aa6.25□□□□□ -1.41
VPS13D-202ENST00000460333 MBLAC1A4D2B0 266 aaPredicted RBP6.25□□□□□ -1.41
VPS13D-202ENST00000460333 CAPN8A6NHC0 703 aa6.25□□□□□ -1.41
VPS13D-202ENST00000460333 TADA2AO75478 443 aa6.25□□□□□ -1.41
VPS13D-202ENST00000460333 CCNKO75909 580 aa6.25□□□□□ -1.41
VPS13D-202ENST00000460333 DDHD2O94830 711 aa6.25□□□□□ -1.41
VPS13D-202ENST00000460333 PIK3R1P27986 724 aa6.25□□□□□ -1.41
VPS13D-202ENST00000460333 SSTR1P30872 391 aa6.25□□□□□ -1.41
VPS13D-202ENST00000460333 CDH5P33151 784 aaPredicted RBP6.25□□□□□ -1.41
VPS13D-202ENST00000460333 GABRB2P47870 512 aa6.25□□□□□ -1.41
VPS13D-202ENST00000460333 RPL14P50914 215 aaKnown RBP6.25□□□□□ -1.41
VPS13D-202ENST00000460333 ZNF143P52747 638 aaPredicted RBP6.25□□□□□ -1.41
VPS13D-202ENST00000460333 DDR2Q16832 855 aa6.25□□□□□ -1.41
VPS13D-202ENST00000460333 RFX4Q33E94 735 aa6.25□□□□□ -1.41
VPS13D-202ENST00000460333 ZNF829Q3KNS6 432 aaPredicted RBP6.25□□□□□ -1.41
VPS13D-202ENST00000460333 CST9Q5W186 159 aa6.25□□□□□ -1.41
VPS13D-202ENST00000460333 DENND5AQ6IQ26 1287 aa6.25□□□□□ -1.41
VPS13D-202ENST00000460333 FAM45BPQ6NSW5 357 aa6.25□□□□□ -1.41
VPS13D-202ENST00000460333 ZNF544Q6NX49 715 aa6.25□□□□□ -1.41
VPS13D-202ENST00000460333 ATG14Q6ZNE5 492 aa6.25□□□□□ -1.41
VPS13D-202ENST00000460333 RNF139Q8WU17 664 aa6.25□□□□□ -1.41
VPS13D-202ENST00000460333 RAB2BQ8WUD1 216 aa6.25□□□□□ -1.41
VPS13D-202ENST00000460333 GINS4Q9BRT9 223 aa6.25□□□□□ -1.41
VPS13D-202ENST00000460333 TMEM121Q9BTD3 319 aa6.25□□□□□ -1.41
VPS13D-202ENST00000460333 ADAMTS10Q9H324 1103 aa6.25□□□□□ -1.41
VPS13D-202ENST00000460333 NXF3Q9H4D5 531 aaKnown RBP6.25□□□□□ -1.41
VPS13D-202ENST00000460333 TRIM45Q9H8W5 580 aaPredicted RBP6.25□□□□□ -1.41
VPS13D-202ENST00000460333 IL1RL2Q9HB29 575 aa6.25□□□□□ -1.41
VPS13D-202ENST00000460333 TRIM39Q9HCM9 518 aa6.25□□□□□ -1.41
VPS13D-202ENST00000460333 PNPLA8Q9NP80 782 aa6.25□□□□□ -1.41
VPS13D-202ENST00000460333 SPAG4Q9NPE6 437 aa6.25□□□□□ -1.41
VPS13D-202ENST00000460333 DYRK4Q9NR20 520 aa6.25□□□□□ -1.41
VPS13D-202ENST00000460333 FAM105AQ9NUU6 356 aa6.25□□□□□ -1.41
VPS13D-202ENST00000460333 IMPAD1Q9NX62 359 aa6.25□□□□□ -1.41
VPS13D-202ENST00000460333 LMCD1Q9NZU5 365 aa6.25□□□□□ -1.41
VPS13D-202ENST00000460333 NKX1-2Q9UD57 310 aaPredicted RBP6.25□□□□□ -1.41
VPS13D-202ENST00000460333 GTF2IRD1Q9UHL9 959 aa6.25□□□□□ -1.41
VPS13D-202ENST00000460333 FAM32AQ9Y421 112 aaKnown RBP6.25□□□□□ -1.41
VPS13D-202ENST00000460333 CCDC182A6NF36 153 aa6.25□□□□□ -1.41
VPS13D-202ENST00000460333 SNTNA6NMZ2 147 aa6.25□□□□□ -1.41
VPS13D-202ENST00000460333 SLC22A2O15244 555 aa6.25□□□□□ -1.41
VPS13D-202ENST00000460333 NBNO60934 754 aa6.25□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 74 ms