RNA–Protein interactions for RNA: ENST00000448238.2

NIPBL-202, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 1 (best) BASIC

Gene NIPBL, Length 8,729 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-202ENST00000448238 SYCE2Q6PIF2 218 aa9.01□□□□□ -0.97
NIPBL-202ENST00000448238 GLB1LQ6UWU2 654 aa9.01□□□□□ -0.97
NIPBL-202ENST00000448238 TMEM179Q6ZVK1 233 aa9.01□□□□□ -0.97
NIPBL-202ENST00000448238 ZNF550Q7Z398 422 aa9.01□□□□□ -0.97
NIPBL-202ENST00000448238 GTPBP2Q9BX10 602 aaKnown RBP9.01□□□□□ -0.97
NIPBL-202ENST00000448238 POLR3FQ9H1D9 316 aaPredicted RBP9.01□□□□□ -0.97
NIPBL-202ENST00000448238 RSPH9Q9H1X1 276 aaPredicted RBP9.01□□□□□ -0.97
NIPBL-202ENST00000448238 DCLK1O15075 740 aa9.01□□□□□ -0.97
NIPBL-202ENST00000448238 MAGEB2O15479 319 aa9.01□□□□□ -0.97
NIPBL-202ENST00000448238 OR10H3O60404 316 aa9.01□□□□□ -0.97
NIPBL-202ENST00000448238 CASP1P29466 404 aa9.01□□□□□ -0.97
NIPBL-202ENST00000448238 ZNF792Q3KQV3 632 aa9.01□□□□□ -0.97
NIPBL-202ENST00000448238 ACSM2BQ68CK6 577 aa9.01□□□□□ -0.97
NIPBL-202ENST00000448238 ACAD10Q6JQN1 1059 aa9.01□□□□□ -0.97
NIPBL-202ENST00000448238 XKRXQ6PP77 449 aa9.01□□□□□ -0.97
NIPBL-202ENST00000448238 FRRS1Q6ZNA5 592 aa9.01□□□□□ -0.97
NIPBL-202ENST00000448238 MILR1Q7Z6M3 343 aa9.01□□□□□ -0.97
NIPBL-202ENST00000448238 PHC2Q8IXK0 858 aa9.01□□□□□ -0.97
NIPBL-202ENST00000448238 TCTEX1D2Q8WW35 142 aa9.01□□□□□ -0.97
NIPBL-202ENST00000448238 RGCCQ9H4X1 137 aa9.01□□□□□ -0.97
NIPBL-202ENST00000448238 NARFQ9UHQ1 456 aa9.01□□□□□ -0.97
NIPBL-202ENST00000448238 DOPEY2Q9Y3R5 2298 aa9.01□□□□□ -0.97
NIPBL-202ENST00000448238 NCK2O43639 380 aa9.01□□□□□ -0.97
NIPBL-202ENST00000448238 SLC34A2O95436 690 aa9.01□□□□□ -0.97
NIPBL-202ENST00000448238 NR2F1P10589 423 aa9.01□□□□□ -0.97
NIPBL-202ENST00000448238 CRATP43155 626 aa9.01□□□□□ -0.97
NIPBL-202ENST00000448238 ZNF844Q08AG5 666 aa9.01□□□□□ -0.97
NIPBL-202ENST00000448238 MAPK7Q13164 816 aa9.01□□□□□ -0.97
NIPBL-202ENST00000448238 CDYL2Q8N8U2 506 aa9.01□□□□□ -0.97
NIPBL-202ENST00000448238 VPS45Q9NRW7 570 aa9.01□□□□□ -0.97
NIPBL-202ENST00000448238 NKIRAS2Q9NYR9 191 aa9.01□□□□□ -0.97
NIPBL-202ENST00000448238 ZNF225Q9UK10 706 aa9.01□□□□□ -0.97
NIPBL-202ENST00000448238 FEM1BQ9UK73 627 aa9.01□□□□□ -0.97
NIPBL-202ENST00000448238 NCAPD2Q15021 1401 aa9.01□□□□□ -0.97
NIPBL-202ENST00000448238 A0A075B6Q4 140 aa9.01□□□□□ -0.97
NIPBL-202ENST00000448238 TTLL13PA6NNM8 815 aa9.01□□□□□ -0.97
NIPBL-202ENST00000448238 DDX3YO15523 660 aaKnown RBP9.01□□□□□ -0.97
NIPBL-202ENST00000448238 AVPR1AP37288 418 aa9.01□□□□□ -0.97
NIPBL-202ENST00000448238 SSX6Q7RTT6 188 aa9.01□□□□□ -0.97
NIPBL-202ENST00000448238 SAPCD2Q86UD0 394 aa9.01□□□□□ -0.97
NIPBL-202ENST00000448238 HERC6Q8IVU3 1022 aa9.01□□□□□ -0.97
NIPBL-202ENST00000448238 MCEMP1Q8IX19 187 aa9.01□□□□□ -0.97
NIPBL-202ENST00000448238 GFM1Q96RP9 751 aaKnown RBP9.01□□□□□ -0.97
NIPBL-202ENST00000448238 VANGL2Q9ULK5 521 aa9.01□□□□□ -0.97
NIPBL-202ENST00000448238 CORO1CQ9ULV4 474 aaPredicted RBP9.01□□□□□ -0.97
NIPBL-202ENST00000448238 SH3PXD2BA1X283 911 aa9□□□□□ -0.97
NIPBL-202ENST00000448238 MFSD10Q14728 455 aa9□□□□□ -0.97
NIPBL-202ENST00000448238 GPAT3Q53EU6 434 aa9□□□□□ -0.97
NIPBL-202ENST00000448238 BRMS1LQ5PSV4 323 aa9□□□□□ -0.97
NIPBL-202ENST00000448238 TRMT11Q7Z4G4 463 aaKnown RBP9□□□□□ -0.97
NIPBL-202ENST00000448238 FBXW8Q8N3Y1 598 aa9□□□□□ -0.97
NIPBL-202ENST00000448238 ZNF557Q8N988 423 aaPredicted RBP9□□□□□ -0.97
NIPBL-202ENST00000448238 FAM71DQ8N9W8 422 aa9□□□□□ -0.97
NIPBL-202ENST00000448238 BAP1Q92560 729 aa9□□□□□ -0.97
NIPBL-202ENST00000448238 UPF1Q92900 1129 aaKnown RBP eCLIP9□□□□□ -0.97
NIPBL-202ENST00000448238 CYP4F12Q9HCS2 524 aa9□□□□□ -0.97
NIPBL-202ENST00000448238 SLC39A1Q9NY26 324 aa9□□□□□ -0.97
NIPBL-202ENST00000448238 WASF3Q9UPY6 502 aa9□□□□□ -0.97
NIPBL-202ENST00000448238 ANKRD33BA6NCL7 494 aa9□□□□□ -0.97
NIPBL-202ENST00000448238 ERI2A8K979 691 aaKnown RBP9□□□□□ -0.97
NIPBL-202ENST00000448238 H3BRB1 525 aa9□□□□□ -0.97
NIPBL-202ENST00000448238 MRASO14807 208 aa9□□□□□ -0.97
NIPBL-202ENST00000448238 FSBPO95073 299 aa9□□□□□ -0.97
NIPBL-202ENST00000448238 FGFR1P11362 822 aa9□□□□□ -0.97
NIPBL-202ENST00000448238 TUBG1P23258 451 aa9□□□□□ -0.97
NIPBL-202ENST00000448238 HTR2AP28223 471 aa9□□□□□ -0.97
NIPBL-202ENST00000448238 CD40LGP29965 261 aa9□□□□□ -0.97
NIPBL-202ENST00000448238 PLEKHN1Q494U1 663 aaPredicted RBP9□□□□□ -0.97
NIPBL-202ENST00000448238 ZNF697Q5TEC3 545 aa9□□□□□ -0.97
NIPBL-202ENST00000448238 SYVN1Q86TM6 617 aa9□□□□□ -0.97
NIPBL-202ENST00000448238 ZNF433Q8N7K0 673 aaPredicted RBP9□□□□□ -0.97
NIPBL-202ENST00000448238 RERGQ96A58 199 aaPredicted RBP9□□□□□ -0.97
NIPBL-202ENST00000448238 MALSU1Q96EH3 234 aa9□□□□□ -0.97
NIPBL-202ENST00000448238 TMEM117Q9H0C3 514 aa9□□□□□ -0.97
NIPBL-202ENST00000448238 TUT1Q9H6E5 874 aaKnown RBP9□□□□□ -0.97
NIPBL-202ENST00000448238 POLR3BQ9NW08 1133 aaPredicted RBP9□□□□□ -0.97
NIPBL-202ENST00000448238 NAGPAQ9UK23 515 aa9□□□□□ -0.97
NIPBL-202ENST00000448238 NEDD4P46934 1319 aa9□□□□□ -0.97
NIPBL-202ENST00000448238 ITIH6Q6UXX5 1313 aa9□□□□□ -0.97
NIPBL-202ENST00000448238 GNALP38405 381 aa9□□□□□ -0.97
NIPBL-202ENST00000448238 LUMP51884 338 aaPredicted RBP9□□□□□ -0.97
NIPBL-202ENST00000448238 SPOCK1Q08629 439 aa9□□□□□ -0.97
NIPBL-202ENST00000448238 FAM91A1Q658Y4 838 aa9□□□□□ -0.97
NIPBL-202ENST00000448238 LRRC34Q8IZ02 419 aa9□□□□□ -0.97
NIPBL-202ENST00000448238 Q8N402 240 aa9□□□□□ -0.97
NIPBL-202ENST00000448238 HSPA12BQ96MM6 686 aa9□□□□□ -0.97
NIPBL-202ENST00000448238 HGH1Q9BTY7 390 aa9□□□□□ -0.97
NIPBL-202ENST00000448238 ANKEF1Q9NU02 776 aa9□□□□□ -0.97
NIPBL-202ENST00000448238 OPTCQ9UBM4 332 aa9□□□□□ -0.97
NIPBL-202ENST00000448238 SAMHD1Q9Y3Z3 626 aaKnown RBP9□□□□□ -0.97
NIPBL-202ENST00000448238 ZNF804BA4D1E1 1349 aa9□□□□□ -0.97
NIPBL-202ENST00000448238 TRPM2O94759 1503 aa9□□□□□ -0.97
NIPBL-202ENST00000448238 SLC16A4O15374 487 aa9□□□□□ -0.97
NIPBL-202ENST00000448238 CFL1P23528 166 aaKnown RBP9□□□□□ -0.97
NIPBL-202ENST00000448238 MAPKAPK3Q16644 382 aa9□□□□□ -0.97
NIPBL-202ENST00000448238 TMEM44Q2T9K0 475 aa9□□□□□ -0.97
NIPBL-202ENST00000448238 PTPN20Q4JDL3 420 aa9□□□□□ -0.97
NIPBL-202ENST00000448238 LMBRD2Q68DH5 695 aaPredicted RBP9□□□□□ -0.97
NIPBL-202ENST00000448238 DUS1LQ6P1R4 473 aaKnown RBP9□□□□□ -0.97
NIPBL-202ENST00000448238 JAZF1Q86VZ6 243 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms