RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 ZNF354CQ86Y25 554 aa21.06■□□□□ 0.96
SDC1-205ENST00000447124 GALNT15Q8N3T1 639 aa21.06■□□□□ 0.96
SDC1-205ENST00000447124 LRRC19Q9H756 370 aa21.06■□□□□ 0.96
SDC1-205ENST00000447124 CATSPERBQ9H7T0 1116 aa21.06■□□□□ 0.96
SDC1-205ENST00000447124 UCKL1Q9NWZ5 548 aa21.06■□□□□ 0.96
SDC1-205ENST00000447124 PCSK1NQ9UHG2 260 aa21.06■□□□□ 0.96
SDC1-205ENST00000447124 ITM2BQ9Y287 266 aa21.06■□□□□ 0.96
SDC1-205ENST00000447124 TRABD2BA6NFA1 517 aa21.05■□□□□ 0.96
SDC1-205ENST00000447124 INSIG1O15503 277 aa21.05■□□□□ 0.96
SDC1-205ENST00000447124 GIMD1P0DJR0 217 aa21.05■□□□□ 0.96
SDC1-205ENST00000447124 DGKAP23743 735 aa21.05■□□□□ 0.96
SDC1-205ENST00000447124 PPP1R2P3Q6NXS1 205 aa21.05■□□□□ 0.96
SDC1-205ENST00000447124 GDPD4Q6W3E5 623 aa21.05■□□□□ 0.96
SDC1-205ENST00000447124 KDM7AQ6ZMT4 941 aa21.05■□□□□ 0.96
SDC1-205ENST00000447124 CYP4V2Q6ZWL3 525 aaPredicted RBP21.05■□□□□ 0.96
SDC1-205ENST00000447124 PROSER1Q86XN7 944 aa21.05■□□□□ 0.96
SDC1-205ENST00000447124 MDM1Q8TC05 714 aa21.05■□□□□ 0.96
SDC1-205ENST00000447124 RAB7BQ96AH8 199 aa21.05■□□□□ 0.96
SDC1-205ENST00000447124 CALN1Q9BXU9 219 aa21.05■□□□□ 0.96
SDC1-205ENST00000447124 EDEM3Q9BZQ6 932 aa21.05■□□□□ 0.96
SDC1-205ENST00000447124 CBX8Q9HC52 389 aa21.05■□□□□ 0.96
SDC1-205ENST00000447124 GPR27Q9NS67 375 aa21.05■□□□□ 0.96
SDC1-205ENST00000447124 COL5A1P20908 1838 aaPredicted RBP21.05■□□□□ 0.96
SDC1-205ENST00000447124 ANKRD11Q6UB99 2663 aaPredicted RBP21.05■□□□□ 0.96
SDC1-205ENST00000447124 J3KR12 359 aa21.04■□□□□ 0.96
SDC1-205ENST00000447124 AREL1O15033 823 aa21.04■□□□□ 0.96
SDC1-205ENST00000447124 TSPAN6O43657 245 aa21.04■□□□□ 0.96
SDC1-205ENST00000447124 TIMP2P16035 220 aa21.04■□□□□ 0.96
SDC1-205ENST00000447124 KLHL30Q0D2K2 578 aa21.04■□□□□ 0.96
SDC1-205ENST00000447124 PROX2Q3B8N5 592 aa21.04■□□□□ 0.96
SDC1-205ENST00000447124 PARP15Q460N3 678 aa21.04■□□□□ 0.96
SDC1-205ENST00000447124 ZNF542PQ5EBM4 170 aa21.04■□□□□ 0.96
SDC1-205ENST00000447124 ERMARDQ5T6L9 678 aa21.04■□□□□ 0.96
SDC1-205ENST00000447124 CASKIN2Q8WXE0 1202 aa21.04■□□□□ 0.96
SDC1-205ENST00000447124 CELF6Q96J87 481 aaKnown RBP21.04■□□□□ 0.96
SDC1-205ENST00000447124 KCTD15Q96SI1 283 aaPredicted RBP21.04■□□□□ 0.96
SDC1-205ENST00000447124 SLC39A8Q9C0K1 460 aa21.04■□□□□ 0.96
SDC1-205ENST00000447124 DHX35Q9H5Z1 703 aaKnown RBP21.04■□□□□ 0.96
SDC1-205ENST00000447124 CCDC86Q9H6F5 360 aaKnown RBP21.04■□□□□ 0.96
SDC1-205ENST00000447124 PDFQ9HBH1 243 aa21.04■□□□□ 0.96
SDC1-205ENST00000447124 LHX3Q9UBR4 397 aa21.04■□□□□ 0.96
SDC1-205ENST00000447124 CNOT8Q9UFF9 292 aaKnown RBP21.04■□□□□ 0.96
SDC1-205ENST00000447124 AP4E1Q9UPM8 1137 aa21.04■□□□□ 0.96
SDC1-205ENST00000447124 MFHAS1Q9Y4C4 1052 aa21.04■□□□□ 0.96
SDC1-205ENST00000447124 URB1O60287 2271 aaKnown RBP21.03■□□□□ 0.96
SDC1-205ENST00000447124 SYCE3A1L190 88 aa21.03■□□□□ 0.96
SDC1-205ENST00000447124 FGF10O15520 208 aaPredicted RBP21.03■□□□□ 0.96
SDC1-205ENST00000447124 SIGLEC6O43699 453 aa21.03■□□□□ 0.96
SDC1-205ENST00000447124 RFPL3O75679 317 aa21.03■□□□□ 0.96
SDC1-205ENST00000447124 SERPINC1P01008 464 aa21.03■□□□□ 0.96
SDC1-205ENST00000447124 C1SP09871 688 aa21.03■□□□□ 0.96
SDC1-205ENST00000447124 MIPP30301 263 aa21.03■□□□□ 0.96
SDC1-205ENST00000447124 PBX1P40424 430 aa21.03■□□□□ 0.96
SDC1-205ENST00000447124 TPI1P60174 286 aa21.03■□□□□ 0.96
SDC1-205ENST00000447124 FANCCQ00597 558 aa21.03■□□□□ 0.96
SDC1-205ENST00000447124 LRRC73Q5JTD7 316 aa21.03■□□□□ 0.96
SDC1-205ENST00000447124 TPRG1LQ5T0D9 272 aa21.03■□□□□ 0.96
SDC1-205ENST00000447124 TTC7BQ86TV6 843 aa21.03■□□□□ 0.96
SDC1-205ENST00000447124 LUZP1Q86V48 1076 aa21.03■□□□□ 0.96
SDC1-205ENST00000447124 TMPRSS12Q86WS5 348 aa21.03■□□□□ 0.96
SDC1-205ENST00000447124 ASB12Q8WXK4 309 aa21.03■□□□□ 0.96
SDC1-205ENST00000447124 GDAP1L1Q96MZ0 367 aa21.03■□□□□ 0.96
SDC1-205ENST00000447124 LENG8Q96PV6 779 aaPredicted RBP21.03■□□□□ 0.96
SDC1-205ENST00000447124 SNRNP25Q9BV90 132 aaKnown RBP21.03■□□□□ 0.96
SDC1-205ENST00000447124 OSBPL1AQ9BXW6 950 aa21.03■□□□□ 0.96
SDC1-205ENST00000447124 DSPP15924 2871 aaKnown RBP21.03■□□□□ 0.96
SDC1-205ENST00000447124 ZFYVE26Q68DK2 2539 aa21.02■□□□□ 0.96
SDC1-205ENST00000447124 A6NNZ2 444 aa21.02■□□□□ 0.96
SDC1-205ENST00000447124 PIAS2O75928 621 aa21.02■□□□□ 0.96
SDC1-205ENST00000447124 CKMT2P17540 419 aa21.02■□□□□ 0.96
SDC1-205ENST00000447124 HTR7P34969 479 aa21.02■□□□□ 0.96
SDC1-205ENST00000447124 PAPOLAP51003 745 aaKnown RBP21.02■□□□□ 0.96
SDC1-205ENST00000447124 NDST2P52849 883 aa21.02■□□□□ 0.96
SDC1-205ENST00000447124 RHOAP61586 193 aa21.02■□□□□ 0.96
SDC1-205ENST00000447124 SGCGQ13326 291 aa21.02■□□□□ 0.96
SDC1-205ENST00000447124 ZNF211Q13398 564 aaPredicted RBP21.02■□□□□ 0.96
SDC1-205ENST00000447124 FZD2Q14332 565 aa21.02■□□□□ 0.96
SDC1-205ENST00000447124 FIGNQ5HY92 759 aa21.02■□□□□ 0.96
SDC1-205ENST00000447124 HGSNATQ68CP4 663 aa21.02■□□□□ 0.96
SDC1-205ENST00000447124 KYAT3Q6YP21 454 aaKnown RBP21.02■□□□□ 0.96
SDC1-205ENST00000447124 FAM174AQ8TBP5 190 aa21.02■□□□□ 0.96
SDC1-205ENST00000447124 FNIP1Q8TF40 1166 aa21.02■□□□□ 0.96
SDC1-205ENST00000447124 EXOC2Q96KP1 924 aa21.02■□□□□ 0.96
SDC1-205ENST00000447124 ISCUQ9H1K1 167 aa21.02■□□□□ 0.96
SDC1-205ENST00000447124 EEF2KO00418 725 aaKnown RBP21.01■□□□□ 0.95
SDC1-205ENST00000447124 NEMP1O14524 444 aa21.01■□□□□ 0.95
SDC1-205ENST00000447124 BUB1BO60566 1050 aaPredicted RBP21.01■□□□□ 0.95
SDC1-205ENST00000447124 PRAMEF11O60813 436 aa21.01■□□□□ 0.95
SDC1-205ENST00000447124 MMP20O60882 483 aa21.01■□□□□ 0.95
SDC1-205ENST00000447124 IGSF6O95976 241 aa21.01■□□□□ 0.95
SDC1-205ENST00000447124 ERCC2P18074 760 aa21.01■□□□□ 0.95
SDC1-205ENST00000447124 RAD51Q06609 339 aa21.01■□□□□ 0.95
SDC1-205ENST00000447124 CYP4F3Q08477 520 aa21.01■□□□□ 0.95
SDC1-205ENST00000447124 AFMIDQ63HM1 303 aa21.01■□□□□ 0.95
SDC1-205ENST00000447124 PTAR1Q7Z6K3 402 aaPredicted RBP21.01■□□□□ 0.95
SDC1-205ENST00000447124 DCP2Q8IU60 420 aaKnown RBP21.01■□□□□ 0.95
SDC1-205ENST00000447124 ARHGAP12Q8IWW6 846 aa21.01■□□□□ 0.95
SDC1-205ENST00000447124 CENPTQ96BT3 561 aa21.01■□□□□ 0.95
SDC1-205ENST00000447124 ZNF653Q96CK0 615 aa21.01■□□□□ 0.95
SDC1-205ENST00000447124 IFT43Q96FT9 208 aa21.01■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms