RNA–Protein interactions for RNA: ENST00000441114.5

SHH-204, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 888 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-204ENST00000441114 A0A1B0GTW7 788 aa18.9■□□□□ 0.62
SHH-204ENST00000441114 C16orf96A6NNT2 1141 aa18.9■□□□□ 0.62
SHH-204ENST00000441114 MUSKO15146 869 aa18.9■□□□□ 0.62
SHH-204ENST00000441114 ARHGAP6O43182 974 aa18.9■□□□□ 0.62
SHH-204ENST00000441114 RNGTTO60942 597 aaKnown RBP18.9■□□□□ 0.62
SHH-204ENST00000441114 GJB3O75712 270 aa18.9■□□□□ 0.62
SHH-204ENST00000441114 PCDH8O95206 1070 aa18.9■□□□□ 0.62
SHH-204ENST00000441114 KRT10P13645 584 aa18.9■□□□□ 0.62
SHH-204ENST00000441114 ADRB3P13945 408 aa18.9■□□□□ 0.62
SHH-204ENST00000441114 GARSP41250 739 aaKnown RBP18.9■□□□□ 0.62
SHH-204ENST00000441114 SCNN1BP51168 640 aa18.9■□□□□ 0.62
SHH-204ENST00000441114 GALNT2Q10471 571 aa18.9■□□□□ 0.62
SHH-204ENST00000441114 SLC10A2Q12908 348 aaPredicted RBP18.9■□□□□ 0.62
SHH-204ENST00000441114 SLC23A3Q6PIS1 610 aa18.9■□□□□ 0.62
SHH-204ENST00000441114 NPNTQ6UXI9 565 aa18.9■□□□□ 0.62
SHH-204ENST00000441114 SPOCD1Q6ZMY3 1216 aa18.9■□□□□ 0.62
SHH-204ENST00000441114 CCNYQ8ND76 341 aa18.9■□□□□ 0.62
SHH-204ENST00000441114 KLK6Q92876 244 aa18.9■□□□□ 0.62
SHH-204ENST00000441114 FAM131CQ96AQ9 280 aa18.9■□□□□ 0.62
SHH-204ENST00000441114 SLC6A14Q9UN76 642 aa18.9■□□□□ 0.62
SHH-204ENST00000441114 ADGRG1Q9Y653 693 aa18.9■□□□□ 0.62
SHH-204ENST00000441114 GRID2IPA4D2P6 1211 aa18.89■□□□□ 0.61
SHH-204ENST00000441114 BCAT2O15382 392 aaPredicted RBP18.89■□□□□ 0.61
SHH-204ENST00000441114 FOXD2O60548 495 aaPredicted RBP18.89■□□□□ 0.61
SHH-204ENST00000441114 ZRANB2O95218 330 aaKnown RBP eCLIP18.89■□□□□ 0.61
SHH-204ENST00000441114 PEX11BO96011 259 aa18.89■□□□□ 0.61
SHH-204ENST00000441114 CD27P26842 260 aa18.89■□□□□ 0.61
SHH-204ENST00000441114 HOXD12P35452 270 aa18.89■□□□□ 0.61
SHH-204ENST00000441114 RENBPP51606 427 aa18.89■□□□□ 0.61
SHH-204ENST00000441114 CCR5P51681 352 aa18.89■□□□□ 0.61
SHH-204ENST00000441114 MAXP61244 160 aa18.89■□□□□ 0.61
SHH-204ENST00000441114 IFI16Q16666 785 aaKnown RBP18.89■□□□□ 0.61
SHH-204ENST00000441114 LRRC73Q5JTD7 316 aa18.89■□□□□ 0.61
SHH-204ENST00000441114 MARC1Q5VT66 337 aa18.89■□□□□ 0.61
SHH-204ENST00000441114 RABEPKQ7Z6M1 372 aa18.89■□□□□ 0.61
SHH-204ENST00000441114 KATNAL2Q8IYT4 538 aa18.89■□□□□ 0.61
SHH-204ENST00000441114 RCOR2Q8IZ40 523 aa18.89■□□□□ 0.61
SHH-204ENST00000441114 BBS5Q8N3I7 341 aa18.89■□□□□ 0.61
SHH-204ENST00000441114 PAF1Q8N7H5 531 aa18.89■□□□□ 0.61
SHH-204ENST00000441114 PLD5Q8N7P1 536 aa18.89■□□□□ 0.61
SHH-204ENST00000441114 VOPP1Q96AW1 172 aa18.89■□□□□ 0.61
SHH-204ENST00000441114 ZNF830Q96NB3 372 aaPredicted RBP18.89■□□□□ 0.61
SHH-204ENST00000441114 EDEM2Q9BV94 578 aa18.89■□□□□ 0.61
SHH-204ENST00000441114 GTPBP2Q9BX10 602 aaKnown RBP18.89■□□□□ 0.61
SHH-204ENST00000441114 KDM4CQ9H3R0 1056 aa18.89■□□□□ 0.61
SHH-204ENST00000441114 EBF2Q9HAK2 575 aa18.89■□□□□ 0.61
SHH-204ENST00000441114 DTLQ9NZJ0 730 aa18.89■□□□□ 0.61
SHH-204ENST00000441114 FRYLO94915 3013 aa18.88■□□□□ 0.61
SHH-204ENST00000441114 A0A1W2PPC4 97 aa18.88■□□□□ 0.61
SHH-204ENST00000441114 A0A1W2PQU0 124 aa18.88■□□□□ 0.61
SHH-204ENST00000441114 LNP1A1A4G5 178 aa18.88■□□□□ 0.61
SHH-204ENST00000441114 ZNF487B1APH4 448 aa18.88■□□□□ 0.61
SHH-204ENST00000441114 SERPINF2P08697 491 aa18.88■□□□□ 0.61
SHH-204ENST00000441114 ZFXP17010 805 aaPredicted RBP18.88■□□□□ 0.61
SHH-204ENST00000441114 MX2P20592 715 aa18.88■□□□□ 0.61
SHH-204ENST00000441114 ABL2P42684 1182 aa18.88■□□□□ 0.61
SHH-204ENST00000441114 CDKN2BP42772 138 aa18.88■□□□□ 0.61
SHH-204ENST00000441114 MMP13P45452 471 aa18.88■□□□□ 0.61
SHH-204ENST00000441114 MAPK8P45983 427 aa18.88■□□□□ 0.61
SHH-204ENST00000441114 ITKQ08881 620 aa18.88■□□□□ 0.61
SHH-204ENST00000441114 CFAP58Q5T655 872 aa18.88■□□□□ 0.61
SHH-204ENST00000441114 SLC9A4Q6AI14 798 aa18.88■□□□□ 0.61
SHH-204ENST00000441114 TIGD7Q6NT04 549 aaPredicted RBP18.88■□□□□ 0.61
SHH-204ENST00000441114 TTC7BQ86TV6 843 aa18.88■□□□□ 0.61
SHH-204ENST00000441114 PRPF39Q86UA1 669 aaKnown RBP18.88■□□□□ 0.61
SHH-204ENST00000441114 VSIG1Q86XK7 387 aa18.88■□□□□ 0.61
SHH-204ENST00000441114 CAMK1DQ8IU85 385 aa18.88■□□□□ 0.61
SHH-204ENST00000441114 LRRC49Q8IUZ0 686 aa18.88■□□□□ 0.61
SHH-204ENST00000441114 PGBD5Q8N414 524 aa18.88■□□□□ 0.61
SHH-204ENST00000441114 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP18.88■□□□□ 0.61
SHH-204ENST00000441114 PSKH2Q96QS6 385 aa18.88■□□□□ 0.61
SHH-204ENST00000441114 CPEB1Q9BZB8 566 aaKnown RBP18.88■□□□□ 0.61
SHH-204ENST00000441114 SUV39H2Q9H5I1 410 aa18.88■□□□□ 0.61
SHH-204ENST00000441114 PREBQ9HCU5 417 aa18.88■□□□□ 0.61
SHH-204ENST00000441114 TM9SF3Q9HD45 589 aa18.88■□□□□ 0.61
SHH-204ENST00000441114 NT5MQ9NPB1 228 aa18.88■□□□□ 0.61
SHH-204ENST00000441114 PRR5-ARHGAP8B1AHC4 643 aa18.87■□□□□ 0.61
SHH-204ENST00000441114 NEMP1O14524 444 aa18.87■□□□□ 0.61
SHH-204ENST00000441114 NRDCO43847 1150 aa18.87■□□□□ 0.61
SHH-204ENST00000441114 CST8O60676 142 aa18.87■□□□□ 0.61
SHH-204ENST00000441114 NEBLO76041 1014 aa18.87■□□□□ 0.61
SHH-204ENST00000441114 ENGP17813 658 aa18.87■□□□□ 0.61
SHH-204ENST00000441114 ITIH2P19823 946 aa18.87■□□□□ 0.61
SHH-204ENST00000441114 XPAP23025 273 aaPredicted RBP18.87■□□□□ 0.61
SHH-204ENST00000441114 CCNCP24863 283 aa18.87■□□□□ 0.61
SHH-204ENST00000441114 CTNNA1P35221 906 aaKnown RBP18.87■□□□□ 0.61
SHH-204ENST00000441114 CSNK1DP48730 415 aa18.87■□□□□ 0.61
SHH-204ENST00000441114 CSNK1EP49674 416 aaKnown RBP18.87■□□□□ 0.61
SHH-204ENST00000441114 ARHGAP8P85298 464 aa18.87■□□□□ 0.61
SHH-204ENST00000441114 NSUN2Q08J23 767 aaKnown RBP eCLIP18.87■□□□□ 0.61
SHH-204ENST00000441114 RSPO4Q2I0M5 234 aaPredicted RBP18.87■□□□□ 0.61
SHH-204ENST00000441114 LAYNQ6UX15 382 aa18.87■□□□□ 0.61
SHH-204ENST00000441114 B4GALNT4Q76KP1 1039 aa18.87■□□□□ 0.61
SHH-204ENST00000441114 PEX26Q7Z412 305 aa18.87■□□□□ 0.61
SHH-204ENST00000441114 ADAT2Q7Z6V5 191 aaKnown RBP18.87■□□□□ 0.61
SHH-204ENST00000441114 LRRC57Q8N9N7 239 aa18.87■□□□□ 0.61
SHH-204ENST00000441114 PIEZO1Q92508 2521 aa18.87■□□□□ 0.61
SHH-204ENST00000441114 RBM41Q96IZ5 413 aaKnown RBP18.87■□□□□ 0.61
SHH-204ENST00000441114 SLC6A18Q96N87 628 aa18.87■□□□□ 0.61
SHH-204ENST00000441114 ORAI3Q9BRQ5 295 aa18.87■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms