RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 FIBCD1Q8N539 461 aa17.33■□□□□ 0.36
PTPRF-209ENST00000438120 SIKE1Q9BRV8 207 aa17.33■□□□□ 0.36
PTPRF-209ENST00000438120 SNX6Q9UNH7 406 aa17.33■□□□□ 0.36
PTPRF-209ENST00000438120 SMIM31A0A1B0GVY4 71 aa17.33■□□□□ 0.36
PTPRF-209ENST00000438120 ATP6AP2A0A1C7CYW4 349 aa17.33■□□□□ 0.36
PTPRF-209ENST00000438120 ATP6AP2O75787 350 aa17.33■□□□□ 0.36
PTPRF-209ENST00000438120 ITGB3BPQ13352 177 aaPredicted RBP17.33■□□□□ 0.36
PTPRF-209ENST00000438120 PSMD5Q16401 504 aa17.33■□□□□ 0.36
PTPRF-209ENST00000438120 AFTPHQ6ULP2 937 aa17.33■□□□□ 0.36
PTPRF-209ENST00000438120 TERB1Q8NA31 727 aa17.33■□□□□ 0.36
PTPRF-209ENST00000438120 PIWIL2Q8TC59 973 aaKnown RBP17.33■□□□□ 0.36
PTPRF-209ENST00000438120 BAP1Q92560 729 aa17.33■□□□□ 0.36
PTPRF-209ENST00000438120 SKA1Q96BD8 255 aa17.33■□□□□ 0.36
PTPRF-209ENST00000438120 CXorf40BQ96DE9 158 aa17.33■□□□□ 0.36
PTPRF-209ENST00000438120 MRPS26Q9BYN8 205 aaKnown RBP17.33■□□□□ 0.36
PTPRF-209ENST00000438120 RABGEF1Q9UJ41 708 aa17.33■□□□□ 0.36
PTPRF-209ENST00000438120 H0Y858 1186 aa17.32■□□□□ 0.36
PTPRF-209ENST00000438120 MSI1O43347 362 aaKnown RBP17.32■□□□□ 0.36
PTPRF-209ENST00000438120 FAM151BQ6UXP7 276 aa17.32■□□□□ 0.36
PTPRF-209ENST00000438120 PRELID2Q8N945 189 aa17.32■□□□□ 0.36
PTPRF-209ENST00000438120 ASZ1Q8WWH4 475 aa17.32■□□□□ 0.36
PTPRF-209ENST00000438120 GRIP2Q9C0E4 1043 aa17.32■□□□□ 0.36
PTPRF-209ENST00000438120 PLK2Q9NYY3 685 aa17.32■□□□□ 0.36
PTPRF-209ENST00000438120 MYRFQ9Y2G1 1151 aa17.32■□□□□ 0.36
PTPRF-209ENST00000438120 PEX10O60683 326 aa17.32■□□□□ 0.36
PTPRF-209ENST00000438120 LRATO95237 230 aa17.32■□□□□ 0.36
PTPRF-209ENST00000438120 ZNF135P52742 658 aaPredicted RBP17.32■□□□□ 0.36
PTPRF-209ENST00000438120 SVOPQ8N4V2 548 aa17.32■□□□□ 0.36
PTPRF-209ENST00000438120 NDRG1Q92597 394 aaKnown RBP17.32■□□□□ 0.36
PTPRF-209ENST00000438120 PAIP1Q9H074 479 aaKnown RBP17.32■□□□□ 0.36
PTPRF-209ENST00000438120 ANAPC2Q9UJX6 822 aa17.32■□□□□ 0.36
PTPRF-209ENST00000438120 SPATA2Q9UM82 520 aa17.32■□□□□ 0.36
PTPRF-209ENST00000438120 hCG_1818297A0A087WSY0 165 aa17.32■□□□□ 0.36
PTPRF-209ENST00000438120 WNT7AO00755 349 aa17.32■□□□□ 0.36
PTPRF-209ENST00000438120 ANXA6P08133 673 aa17.32■□□□□ 0.36
PTPRF-209ENST00000438120 MRPS5P82675 430 aaKnown RBP17.32■□□□□ 0.36
PTPRF-209ENST00000438120 PTSQ03393 145 aa17.32■□□□□ 0.36
PTPRF-209ENST00000438120 BIKQ13323 160 aa17.32■□□□□ 0.36
PTPRF-209ENST00000438120 XKR6Q5GH73 641 aa17.32■□□□□ 0.36
PTPRF-209ENST00000438120 ZNF618Q5T7W0 954 aa17.32■□□□□ 0.36
PTPRF-209ENST00000438120 BTBD9Q96Q07 612 aa17.32■□□□□ 0.36
PTPRF-209ENST00000438120 C9orf16Q9BUW7 83 aa17.32■□□□□ 0.36
PTPRF-209ENST00000438120 DNAJC5Q9H3Z4 198 aa17.32■□□□□ 0.36
PTPRF-209ENST00000438120 CAB39LQ9H9S4 337 aa17.32■□□□□ 0.36
PTPRF-209ENST00000438120 AASDHPPTQ9NRN7 309 aa17.32■□□□□ 0.36
PTPRF-209ENST00000438120 CASZ1Q86V15 1759 aa17.32■□□□□ 0.36
PTPRF-209ENST00000438120 H3BMM5 538 aa17.32■□□□□ 0.36
PTPRF-209ENST00000438120 OR4Q2P0C623 313 aa17.32■□□□□ 0.36
PTPRF-209ENST00000438120 LINC00032P0C843 101 aa17.32■□□□□ 0.36
PTPRF-209ENST00000438120 CSH1P0DML2 217 aa17.32■□□□□ 0.36
PTPRF-209ENST00000438120 CSH2P0DML3 217 aa17.32■□□□□ 0.36
PTPRF-209ENST00000438120 LRRC10BA6NIK2 292 aa17.32■□□□□ 0.36
PTPRF-209ENST00000438120 OR6B1O95007 311 aa17.32■□□□□ 0.36
PTPRF-209ENST00000438120 ALOX12P18054 663 aa17.32■□□□□ 0.36
PTPRF-209ENST00000438120 GNA13Q14344 377 aa17.32■□□□□ 0.36
PTPRF-209ENST00000438120 ZNF697Q5TEC3 545 aa17.32■□□□□ 0.36
PTPRF-209ENST00000438120 MAB21L3Q8N8X9 362 aa17.32■□□□□ 0.36
PTPRF-209ENST00000438120 JOSD2Q8TAC2 188 aa17.32■□□□□ 0.36
PTPRF-209ENST00000438120 TPRKBQ9Y3C4 175 aa17.32■□□□□ 0.36
PTPRF-209ENST00000438120 ZMYM2Q9UBW7 1377 aa17.31■□□□□ 0.36
PTPRF-209ENST00000438120 A0A088AWK7 358 aa17.31■□□□□ 0.36
PTPRF-209ENST00000438120 TLR5O60602 858 aa17.31■□□□□ 0.36
PTPRF-209ENST00000438120 ERBB2P04626 1255 aa17.31■□□□□ 0.36
PTPRF-209ENST00000438120 ZNF10P21506 573 aaPredicted RBP17.31■□□□□ 0.36
PTPRF-209ENST00000438120 CYP2C18P33260 490 aa17.31■□□□□ 0.36
PTPRF-209ENST00000438120 CRYBB1P53674 252 aaPredicted RBP17.31■□□□□ 0.36
PTPRF-209ENST00000438120 APTXQ7Z2E3 356 aaKnown RBP17.31■□□□□ 0.36
PTPRF-209ENST00000438120 TEKT5Q96M29 485 aa17.31■□□□□ 0.36
PTPRF-209ENST00000438120 MRPL39Q9NYK5 338 aaKnown RBP17.31■□□□□ 0.36
PTPRF-209ENST00000438120 BCLAF3A2AJT9 711 aaKnown RBP17.31■□□□□ 0.36
PTPRF-209ENST00000438120 GPAT3Q53EU6 434 aa17.31■□□□□ 0.36
PTPRF-209ENST00000438120 DISP2A7MBM2 1401 aa17.31■□□□□ 0.36
PTPRF-209ENST00000438120 LYPLA1O75608 230 aaPredicted RBP17.31■□□□□ 0.36
PTPRF-209ENST00000438120 ARF4P18085 180 aaPredicted RBP17.31■□□□□ 0.36
PTPRF-209ENST00000438120 ZSWIM7Q19AV6 140 aa17.31■□□□□ 0.36
PTPRF-209ENST00000438120 IZUMO1Q8IYV9 350 aa17.31■□□□□ 0.36
PTPRF-209ENST00000438120 ZCCHC7Q8N3Z6 543 aaKnown RBP17.31■□□□□ 0.36
PTPRF-209ENST00000438120 SETD9Q8NE22 299 aa17.31■□□□□ 0.36
PTPRF-209ENST00000438120 SHC3Q92529 594 aa17.31■□□□□ 0.36
PTPRF-209ENST00000438120 SLC9A3R1O14745 358 aaPredicted RBP17.31■□□□□ 0.36
PTPRF-209ENST00000438120 TTPAP49638 278 aa17.31■□□□□ 0.36
PTPRF-209ENST00000438120 RAB10P61026 200 aa17.31■□□□□ 0.36
PTPRF-209ENST00000438120 C16orf72Q14CZ0 275 aa17.31■□□□□ 0.36
PTPRF-209ENST00000438120 CRTC3Q6UUV7 619 aa17.31■□□□□ 0.36
PTPRF-209ENST00000438120 FAM35AQ86V20 835 aa17.31■□□□□ 0.36
PTPRF-209ENST00000438120 PHF13Q86YI8 300 aaPredicted RBP17.31■□□□□ 0.36
PTPRF-209ENST00000438120 CKAP2Q8WWK9 683 aa17.31■□□□□ 0.36
PTPRF-209ENST00000438120 OLFM1Q99784 485 aa17.31■□□□□ 0.36
PTPRF-209ENST00000438120 AGO1Q9UL18 857 aaKnown RBP17.31■□□□□ 0.36
PTPRF-209ENST00000438120 ZNF37AP17032 561 aaPredicted RBP17.31■□□□□ 0.36
PTPRF-209ENST00000438120 ATP5F1P24539 256 aaPredicted RBP17.31■□□□□ 0.36
PTPRF-209ENST00000438120 TAF13Q15543 124 aa17.31■□□□□ 0.36
PTPRF-209ENST00000438120 OR10G6Q8NH81 332 aa17.31■□□□□ 0.36
PTPRF-209ENST00000438120 HDAC10Q969S8 669 aa17.31■□□□□ 0.36
PTPRF-209ENST00000438120 MECRQ9BV79 373 aa17.31■□□□□ 0.36
PTPRF-209ENST00000438120 COPG2Q9UBF2 871 aa17.31■□□□□ 0.36
PTPRF-209ENST00000438120 MORF4L1Q9UBU8 362 aa17.31■□□□□ 0.36
PTPRF-209ENST00000438120 MSRAQ9UJ68 235 aa17.31■□□□□ 0.36
PTPRF-209ENST00000438120 MYBL2P10244 700 aa17.3■□□□□ 0.36
PTPRF-209ENST00000438120 CPSF6Q16630 551 aaKnown RBP eCLIP17.3■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms