RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 MAP3K21Q5TCX8 1036 aa11.94□□□□□ -0.5
CD44-209ENST00000433892 LRRTM3Q86VH5 581 aa11.94□□□□□ -0.5
CD44-209ENST00000433892 RNF135Q8IUD6 432 aa11.94□□□□□ -0.5
CD44-209ENST00000433892 FCRL2Q96LA5 508 aaPredicted RBP11.94□□□□□ -0.5
CD44-209ENST00000433892 NDNQ99608 321 aa11.94□□□□□ -0.5
CD44-209ENST00000433892 NPAS2Q99743 824 aa11.94□□□□□ -0.5
CD44-209ENST00000433892 KATNAL1Q9BW62 490 aa11.94□□□□□ -0.5
CD44-209ENST00000433892 UBE2OQ9C0C9 1292 aaKnown RBP11.94□□□□□ -0.5
CD44-209ENST00000433892 POMKQ9H5K3 350 aa11.94□□□□□ -0.5
CD44-209ENST00000433892 WDR41Q9HAD4 459 aa11.94□□□□□ -0.5
CD44-209ENST00000433892 DMAP1Q9NPF5 467 aaPredicted RBP11.94□□□□□ -0.5
CD44-209ENST00000433892 RBM22Q9NW64 420 aaKnown RBP eCLIP11.94□□□□□ -0.5
CD44-209ENST00000433892 ARHGEF38Q9NXL2 777 aa11.94□□□□□ -0.5
CD44-209ENST00000433892 C6orf203Q9P0P8 240 aaPredicted RBP11.94□□□□□ -0.5
CD44-209ENST00000433892 M0QZ92 97 aa11.93□□□□□ -0.5
CD44-209ENST00000433892 IRAK2O43187 625 aa11.93□□□□□ -0.5
CD44-209ENST00000433892 MOCS2O96007 188 aaPredicted RBP11.93□□□□□ -0.5
CD44-209ENST00000433892 IGLV3-25P01717 112 aa11.93□□□□□ -0.5
CD44-209ENST00000433892 ODC1P11926 461 aa11.93□□□□□ -0.5
CD44-209ENST00000433892 ARSAP15289 507 aa11.93□□□□□ -0.5
CD44-209ENST00000433892 TCN1P20061 433 aaPredicted RBP11.93□□□□□ -0.5
CD44-209ENST00000433892 ADRA1AP35348 466 aa11.93□□□□□ -0.5
CD44-209ENST00000433892 CD151P48509 253 aa11.93□□□□□ -0.5
CD44-209ENST00000433892 PCSK7Q16549 785 aa11.93□□□□□ -0.5
CD44-209ENST00000433892 CWF19L1Q69YN2 538 aaKnown RBP11.93□□□□□ -0.5
CD44-209ENST00000433892 FAM171BQ6P995 826 aa11.93□□□□□ -0.5
CD44-209ENST00000433892 CNSTQ6PJW8 725 aa11.93□□□□□ -0.5
CD44-209ENST00000433892 POTEHQ6S545 545 aa11.93□□□□□ -0.5
CD44-209ENST00000433892 TRIM67Q6ZTA4 783 aa11.93□□□□□ -0.5
CD44-209ENST00000433892 SETD3Q86TU7 594 aaPredicted RBP11.93□□□□□ -0.5
CD44-209ENST00000433892 BHLHE22Q8NFJ8 381 aaPredicted RBP11.93□□□□□ -0.5
CD44-209ENST00000433892 TMA16Q96EY4 203 aaKnown RBP11.93□□□□□ -0.5
CD44-209ENST00000433892 CCDC28BQ9BUN5 200 aa11.93□□□□□ -0.5
CD44-209ENST00000433892 EFCAB1Q9HAE3 211 aa11.93□□□□□ -0.5
CD44-209ENST00000433892 CYP4F12Q9HCS2 524 aa11.93□□□□□ -0.5
CD44-209ENST00000433892 GTSE1Q9NYZ3 720 aa11.93□□□□□ -0.5
CD44-209ENST00000433892 NCKIPSDQ9NZQ3 722 aa11.93□□□□□ -0.5
CD44-209ENST00000433892 MPP6Q9NZW5 540 aa11.93□□□□□ -0.5
CD44-209ENST00000433892 FBXO5Q9UKT4 447 aa11.93□□□□□ -0.5
CD44-209ENST00000433892 TCAF2A6NFQ2 919 aa11.93□□□□□ -0.5
CD44-209ENST00000433892 SLC22A2O15244 555 aa11.93□□□□□ -0.5
CD44-209ENST00000433892 GSTT1P30711 240 aa11.93□□□□□ -0.5
CD44-209ENST00000433892 HOXC8P31273 242 aa11.93□□□□□ -0.5
CD44-209ENST00000433892 GRIA2P42262 883 aa11.93□□□□□ -0.5
CD44-209ENST00000433892 SLC12A2P55011 1212 aa11.93□□□□□ -0.5
CD44-209ENST00000433892 GEMP55040 296 aa11.93□□□□□ -0.5
CD44-209ENST00000433892 EIF4EBP2Q13542 120 aaPredicted RBP11.93□□□□□ -0.5
CD44-209ENST00000433892 CSHL1Q14406 222 aa11.93□□□□□ -0.5
CD44-209ENST00000433892 TLR1Q15399 786 aa11.93□□□□□ -0.5
CD44-209ENST00000433892 CNPY1Q3B7I2 92 aa11.93□□□□□ -0.5
CD44-209ENST00000433892 ZNF789Q5FWF6 425 aa11.93□□□□□ -0.5
CD44-209ENST00000433892 RBM20Q5T481 1227 aaKnown RBP11.93□□□□□ -0.5
CD44-209ENST00000433892 TAF2Q6P1X5 1199 aa11.93□□□□□ -0.5
CD44-209ENST00000433892 ISLR2Q6UXK2 745 aa11.93□□□□□ -0.5
CD44-209ENST00000433892 RPS27LQ71UM5 84 aaKnown RBP11.93□□□□□ -0.5
CD44-209ENST00000433892 PGAM4Q8N0Y7 254 aa11.93□□□□□ -0.5
CD44-209ENST00000433892 C2CD4AQ8NCU7 369 aaPredicted RBP11.93□□□□□ -0.5
CD44-209ENST00000433892 FAM156AQ8NDB6 213 aa11.93□□□□□ -0.5
CD44-209ENST00000433892 OR10T2Q8NGX3 314 aa11.93□□□□□ -0.5
CD44-209ENST00000433892 CASP10Q92851 521 aa11.93□□□□□ -0.5
CD44-209ENST00000433892 DCUN1D1Q96GG9 259 aa11.93□□□□□ -0.5
CD44-209ENST00000433892 MRGPRX2Q96LB1 330 aa11.93□□□□□ -0.5
CD44-209ENST00000433892 LRGUKQ96M69 825 aa11.93□□□□□ -0.5
CD44-209ENST00000433892 MRPL57Q9BQC6 102 aaKnown RBP11.93□□□□□ -0.5
CD44-209ENST00000433892 ACBD6Q9BR61 282 aa11.93□□□□□ -0.5
CD44-209ENST00000433892 CENPKQ9BS16 269 aa11.93□□□□□ -0.5
CD44-209ENST00000433892 SPATA16Q9BXB7 569 aa11.93□□□□□ -0.5
CD44-209ENST00000433892 TRIM4Q9C037 500 aa11.93□□□□□ -0.5
CD44-209ENST00000433892 COPS7BQ9H9Q2 264 aaPredicted RBP11.93□□□□□ -0.5
CD44-209ENST00000433892 ENTPD7Q9NQZ7 604 aa11.93□□□□□ -0.5
CD44-209ENST00000433892 TREX1Q9NSU2 369 aa11.93□□□□□ -0.5
CD44-209ENST00000433892 MYADML2A6NDP7 307 aa11.92□□□□□ -0.5
CD44-209ENST00000433892 CPB1P15086 417 aa11.92□□□□□ -0.5
CD44-209ENST00000433892 PAMP19021 973 aa11.92□□□□□ -0.5
CD44-209ENST00000433892 KCNA5P22460 613 aa11.92□□□□□ -0.5
CD44-209ENST00000433892 CCR1P32246 355 aa11.92□□□□□ -0.5
CD44-209ENST00000433892 RPL9P32969 192 aaKnown RBP11.92□□□□□ -0.5
CD44-209ENST00000433892 CYP2C18P33260 490 aa11.92□□□□□ -0.5
CD44-209ENST00000433892 CHN2P52757 468 aa11.92□□□□□ -0.5
CD44-209ENST00000433892 GRM2Q14416 872 aa11.92□□□□□ -0.5
CD44-209ENST00000433892 NEPROQ6NW34 567 aa11.92□□□□□ -0.5
CD44-209ENST00000433892 UGT2A3Q6UWM9 527 aa11.92□□□□□ -0.5
CD44-209ENST00000433892 RANBP10Q6VN20 620 aa11.92□□□□□ -0.5
CD44-209ENST00000433892 PIWIL4Q7Z3Z4 852 aaKnown RBP11.92□□□□□ -0.5
CD44-209ENST00000433892 PDCD6IPQ8WUM4 868 aaKnown RBP11.92□□□□□ -0.5
CD44-209ENST00000433892 BTBD9Q96Q07 612 aa11.92□□□□□ -0.5
CD44-209ENST00000433892 HAPLN3Q96S86 360 aa11.92□□□□□ -0.5
CD44-209ENST00000433892 SH3GL3Q99963 347 aa11.92□□□□□ -0.5
CD44-209ENST00000433892 CATSPERBQ9H7T0 1116 aa11.92□□□□□ -0.5
CD44-209ENST00000433892 VPS28Q9UK41 221 aa11.92□□□□□ -0.5
CD44-209ENST00000433892 SDHDO14521 159 aa11.91□□□□□ -0.5
CD44-209ENST00000433892 NPHS1O60500 1241 aa11.91□□□□□ -0.5
CD44-209ENST00000433892 TADA2AO75478 443 aa11.91□□□□□ -0.5
CD44-209ENST00000433892 CHRNA1P02708 482 aa11.91□□□□□ -0.5
CD44-209ENST00000433892 CHRM1P11229 460 aaPredicted RBP11.91□□□□□ -0.5
CD44-209ENST00000433892 ME2P23368 584 aa11.91□□□□□ -0.5
CD44-209ENST00000433892 ATP5F1P24539 256 aaPredicted RBP11.91□□□□□ -0.5
CD44-209ENST00000433892 DNAJB1P25685 340 aa11.91□□□□□ -0.5
CD44-209ENST00000433892 ADSLP30566 484 aaPredicted RBP11.91□□□□□ -0.5
CD44-209ENST00000433892 POLD2P49005 469 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms