RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 TRAFD1O14545 582 aaPredicted RBP12.58□□□□□ -0.4
USP40-205ENST00000430158 PPP1R12AO14974 1030 aaPredicted RBP12.58□□□□□ -0.4
USP40-205ENST00000430158 SPINT1O43278 529 aa12.58□□□□□ -0.4
USP40-205ENST00000430158 BNIP3LO60238 219 aa12.58□□□□□ -0.4
USP40-205ENST00000430158 ZNF217O75362 1048 aa12.58□□□□□ -0.4
USP40-205ENST00000430158 ADH1BP00325 375 aa12.58□□□□□ -0.4
USP40-205ENST00000430158 JCHAINP01591 159 aa12.58□□□□□ -0.4
USP40-205ENST00000430158 PRNPP04156 253 aa12.58□□□□□ -0.4
USP40-205ENST00000430158 HLA-DQB2P05538 268 aa12.58□□□□□ -0.4
USP40-205ENST00000430158 MMP2P08253 660 aa12.58□□□□□ -0.4
USP40-205ENST00000430158 PTPN3P26045 913 aa12.58□□□□□ -0.4
USP40-205ENST00000430158 CXCR5P32302 372 aa12.58□□□□□ -0.4
USP40-205ENST00000430158 CNR2P34972 360 aa12.58□□□□□ -0.4
USP40-205ENST00000430158 HSPA9P38646 679 aaKnown RBP12.58□□□□□ -0.4
USP40-205ENST00000430158 CETN2P41208 172 aa12.58□□□□□ -0.4
USP40-205ENST00000430158 NBL1P41271 181 aa12.58□□□□□ -0.4
USP40-205ENST00000430158 MMP13P45452 471 aa12.58□□□□□ -0.4
USP40-205ENST00000430158 PSMD8P48556 350 aa12.58□□□□□ -0.4
USP40-205ENST00000430158 TAS2R38P59533 333 aa12.58□□□□□ -0.4
USP40-205ENST00000430158 SLC45A4Q5BKX6 768 aa12.58□□□□□ -0.4
USP40-205ENST00000430158 PIP5KL1Q5T9C9 394 aa12.58□□□□□ -0.4
USP40-205ENST00000430158 PAPD7Q5XG87 772 aaKnown RBP12.58□□□□□ -0.4
USP40-205ENST00000430158 KIAA1324Q6UXG2 1013 aaKnown RBP12.58□□□□□ -0.4
USP40-205ENST00000430158 DSG4Q86SJ6 1040 aa12.58□□□□□ -0.4
USP40-205ENST00000430158 CACUL1Q86Y37 369 aa12.58□□□□□ -0.4
USP40-205ENST00000430158 CCNYQ8ND76 341 aa12.58□□□□□ -0.4
USP40-205ENST00000430158 COG1Q8WTW3 980 aa12.58□□□□□ -0.4
USP40-205ENST00000430158 TFB1MQ8WVM0 346 aaKnown RBP12.58□□□□□ -0.4
USP40-205ENST00000430158 TADA1Q96BN2 335 aa12.58□□□□□ -0.4
USP40-205ENST00000430158 NUDCD1Q96RS6 583 aa12.58□□□□□ -0.4
USP40-205ENST00000430158 FAM118BQ9BPY3 351 aa12.58□□□□□ -0.4
USP40-205ENST00000430158 CINPQ9BW66 212 aaPredicted RBP12.58□□□□□ -0.4
USP40-205ENST00000430158 HDAC8Q9BY41 377 aa12.58□□□□□ -0.4
USP40-205ENST00000430158 NOD2Q9HC29 1040 aa12.58□□□□□ -0.4
USP40-205ENST00000430158 RBM22Q9NW64 420 aaKnown RBP eCLIP12.58□□□□□ -0.4
USP40-205ENST00000430158 BCCIPQ9P287 314 aaKnown RBP eCLIP12.58□□□□□ -0.4
USP40-205ENST00000430158 TTC7AQ9ULT0 858 aaPredicted RBP12.58□□□□□ -0.4
USP40-205ENST00000430158 INVSQ9Y283 1065 aa12.58□□□□□ -0.4
USP40-205ENST00000430158 R4GN57 208 aa12.58□□□□□ -0.4
USP40-205ENST00000430158 FRYLO94915 3013 aa12.58□□□□□ -0.4
USP40-205ENST00000430158 RALGAPA1Q6GYQ0 2036 aa12.57□□□□□ -0.4
USP40-205ENST00000430158 A0A1W2PP55 124 aa12.57□□□□□ -0.4
USP40-205ENST00000430158 BCLAF3A2AJT9 711 aaKnown RBP12.57□□□□□ -0.4
USP40-205ENST00000430158 KRIT1O00522 736 aa12.57□□□□□ -0.4
USP40-205ENST00000430158 HTRA2O43464 458 aaPredicted RBP12.57□□□□□ -0.4
USP40-205ENST00000430158 RNASEH1O60930 286 aaKnown RBP12.57□□□□□ -0.4
USP40-205ENST00000430158 RPP40O75818 363 aaKnown RBP12.57□□□□□ -0.4
USP40-205ENST00000430158 IGSF6O95976 241 aa12.57□□□□□ -0.4
USP40-205ENST00000430158 IL1BP01584 269 aa12.57□□□□□ -0.4
USP40-205ENST00000430158 ITGB7P26010 798 aa12.57□□□□□ -0.4
USP40-205ENST00000430158 ACSL1P33121 698 aa12.57□□□□□ -0.4
USP40-205ENST00000430158 CD68P34810 354 aaPredicted RBP12.57□□□□□ -0.4
USP40-205ENST00000430158 RECQLP46063 649 aaPredicted RBP12.57□□□□□ -0.4
USP40-205ENST00000430158 MAXP61244 160 aa12.57□□□□□ -0.4
USP40-205ENST00000430158 AP1B1Q10567 949 aa12.57□□□□□ -0.4
USP40-205ENST00000430158 CNTN1Q12860 1018 aa12.57□□□□□ -0.4
USP40-205ENST00000430158 USP39Q53GS9 565 aaKnown RBP12.57□□□□□ -0.4
USP40-205ENST00000430158 TEX44Q53QW1 395 aa12.57□□□□□ -0.4
USP40-205ENST00000430158 RALGPS1Q5JS13 557 aa12.57□□□□□ -0.4
USP40-205ENST00000430158 SEL1L2Q5TEA6 688 aa12.57□□□□□ -0.4
USP40-205ENST00000430158 AGBL4Q5VU57 503 aa12.57□□□□□ -0.4
USP40-205ENST00000430158 FAM46CQ5VWP2 391 aa12.57□□□□□ -0.4
USP40-205ENST00000430158 NYAP1Q6ZVC0 841 aa12.57□□□□□ -0.4
USP40-205ENST00000430158 ZC3H18Q86VM9 953 aaKnown RBP12.57□□□□□ -0.4
USP40-205ENST00000430158 ZSWIM9Q86XI8 627 aa12.57□□□□□ -0.4
USP40-205ENST00000430158 PGBD3Q8N328 593 aa12.57□□□□□ -0.4
USP40-205ENST00000430158 SUMF1Q8NBK3 374 aa12.57□□□□□ -0.4
USP40-205ENST00000430158 GRIN3AQ8TCU5 1115 aa12.57□□□□□ -0.4
USP40-205ENST00000430158 ECHDC3Q96DC8 303 aa12.57□□□□□ -0.4
USP40-205ENST00000430158 ZC3H10Q96K80 434 aaKnown RBP12.57□□□□□ -0.4
USP40-205ENST00000430158 PBKQ96KB5 322 aa12.57□□□□□ -0.4
USP40-205ENST00000430158 TEKT5Q96M29 485 aa12.57□□□□□ -0.4
USP40-205ENST00000430158 CCDC114Q96M63 670 aa12.57□□□□□ -0.4
USP40-205ENST00000430158 DUSP15Q9H1R2 295 aaPredicted RBP12.57□□□□□ -0.4
USP40-205ENST00000430158 NEUROG2Q9H2A3 272 aa12.57□□□□□ -0.4
USP40-205ENST00000430158 EPC1Q9H2F5 836 aa12.57□□□□□ -0.4
USP40-205ENST00000430158 NT5MQ9NPB1 228 aa12.57□□□□□ -0.4
USP40-205ENST00000430158 FBXL12Q9NXK8 326 aa12.57□□□□□ -0.4
USP40-205ENST00000430158 DKK3Q9UBP4 350 aa12.57□□□□□ -0.4
USP40-205ENST00000430158 FZD4Q9ULV1 537 aa12.57□□□□□ -0.4
USP40-205ENST00000430158 SNX12Q9UMY4 172 aa12.57□□□□□ -0.4
USP40-205ENST00000430158 CYP8B1Q9UNU6 501 aa12.57□□□□□ -0.4
USP40-205ENST00000430158 USP34Q70CQ2 3546 aa12.57□□□□□ -0.4
USP40-205ENST00000430158 PROB1E7EW31 1015 aa12.56□□□□□ -0.4
USP40-205ENST00000430158 CES2O00748 559 aa12.56□□□□□ -0.4
USP40-205ENST00000430158 PIGNO95427 931 aa12.56□□□□□ -0.4
USP40-205ENST00000430158 DNTTP04053 509 aa12.56□□□□□ -0.4
USP40-205ENST00000430158 UGT2B4P06133 528 aa12.56□□□□□ -0.4
USP40-205ENST00000430158 RBP3P10745 1247 aa12.56□□□□□ -0.4
USP40-205ENST00000430158 TIMP2P16035 220 aa12.56□□□□□ -0.4
USP40-205ENST00000430158 PRLRP16471 622 aa12.56□□□□□ -0.4
USP40-205ENST00000430158 RBL1P28749 1068 aa12.56□□□□□ -0.4
USP40-205ENST00000430158 CD6P30203 668 aa12.56□□□□□ -0.4
USP40-205ENST00000430158 SCNN1BP51168 640 aa12.56□□□□□ -0.4
USP40-205ENST00000430158 EIF3EP60228 445 aaKnown RBP12.56□□□□□ -0.4
USP40-205ENST00000430158 GNG11P61952 73 aa12.56□□□□□ -0.4
USP40-205ENST00000430158 AP1S1P61966 158 aa12.56□□□□□ -0.4
USP40-205ENST00000430158 DSC2Q02487 901 aa12.56□□□□□ -0.4
USP40-205ENST00000430158 ZNF235Q14590 738 aa12.56□□□□□ -0.4
USP40-205ENST00000430158 OASLQ15646 514 aaKnown RBP12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms