RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 GDAP2Q9NXN4 497 aa9.92□□□□□ -0.82
USP54-205ENST00000424265 FGF19O95750 216 aa9.92□□□□□ -0.82
USP54-205ENST00000424265 LCP1P13796 627 aa9.92□□□□□ -0.82
USP54-205ENST00000424265 PDGFRAP16234 1089 aa9.92□□□□□ -0.82
USP54-205ENST00000424265 CDH2P19022 906 aaPredicted RBP9.92□□□□□ -0.82
USP54-205ENST00000424265 GRM2Q14416 872 aa9.92□□□□□ -0.82
USP54-205ENST00000424265 CARTPTQ16568 116 aa9.92□□□□□ -0.82
USP54-205ENST00000424265 MEI1Q5TIA1 1274 aa9.92□□□□□ -0.82
USP54-205ENST00000424265 TTC27Q6P3X3 843 aa9.92□□□□□ -0.82
USP54-205ENST00000424265 BORAQ6PGQ7 559 aa9.92□□□□□ -0.82
USP54-205ENST00000424265 WDR59Q6PJI9 974 aa9.92□□□□□ -0.82
USP54-205ENST00000424265 IRF2BP1Q8IU81 584 aa9.92□□□□□ -0.82
USP54-205ENST00000424265 ACTRT1Q8TDG2 376 aa9.92□□□□□ -0.82
USP54-205ENST00000424265 FAM172AQ8WUF8 416 aa9.92□□□□□ -0.82
USP54-205ENST00000424265 ZNF606Q8WXB4 792 aa9.92□□□□□ -0.82
USP54-205ENST00000424265 SLC7A6OSQ96CW6 309 aaPredicted RBP9.92□□□□□ -0.82
USP54-205ENST00000424265 DACH2Q96NX9 599 aa9.92□□□□□ -0.82
USP54-205ENST00000424265 PPP1R2P1Q96PQ5 205 aa9.92□□□□□ -0.82
USP54-205ENST00000424265 HEMGNQ9BXL5 484 aa9.92□□□□□ -0.82
USP54-205ENST00000424265 B3GNT4Q9C0J1 378 aa9.92□□□□□ -0.82
USP54-205ENST00000424265 ARL8BQ9NVJ2 186 aa9.92□□□□□ -0.82
USP54-205ENST00000424265 MTPAPQ9NVV4 582 aaKnown RBP eCLIP9.92□□□□□ -0.82
USP54-205ENST00000424265 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP9.92□□□□□ -0.82
USP54-205ENST00000424265 CCNKO75909 580 aa9.91□□□□□ -0.82
USP54-205ENST00000424265 PLEKP08567 350 aaPredicted RBP9.91□□□□□ -0.82
USP54-205ENST00000424265 PEX2P28328 305 aa9.91□□□□□ -0.82
USP54-205ENST00000424265 PCSK6P29122 969 aa9.91□□□□□ -0.82
USP54-205ENST00000424265 ETV1P50549 477 aa9.91□□□□□ -0.82
USP54-205ENST00000424265 PFKPQ01813 784 aa9.91□□□□□ -0.82
USP54-205ENST00000424265 TRIM25Q14258 630 aaKnown RBP9.91□□□□□ -0.82
USP54-205ENST00000424265 IDO2Q6ZQW0 420 aa9.91□□□□□ -0.82
USP54-205ENST00000424265 CLNKQ7Z7G1 428 aa9.91□□□□□ -0.82
USP54-205ENST00000424265 ZBTB46Q86UZ6 589 aa9.91□□□□□ -0.82
USP54-205ENST00000424265 ARHGEF19Q8IW93 802 aa9.91□□□□□ -0.82
USP54-205ENST00000424265 FGFBP2Q9BYJ0 223 aa9.91□□□□□ -0.82
USP54-205ENST00000424265 ABI2Q9NYB9 513 aaPredicted RBP9.91□□□□□ -0.82
USP54-205ENST00000424265 PKD2L2Q9NZM6 624 aa9.91□□□□□ -0.82
USP54-205ENST00000424265 PCDHB8Q9UN66 801 aa9.91□□□□□ -0.82
USP54-205ENST00000424265 TRAFD1O14545 582 aaPredicted RBP9.91□□□□□ -0.82
USP54-205ENST00000424265 SERPINH1P50454 418 aaKnown RBP9.91□□□□□ -0.82
USP54-205ENST00000424265 P2RX3P56373 397 aa9.91□□□□□ -0.82
USP54-205ENST00000424265 ANO4Q32M45 955 aa9.91□□□□□ -0.82
USP54-205ENST00000424265 GJB7Q6PEY0 223 aa9.91□□□□□ -0.82
USP54-205ENST00000424265 TTC16Q8NEE8 873 aa9.91□□□□□ -0.82
USP54-205ENST00000424265 DBF4BQ8NFT6 615 aa9.91□□□□□ -0.82
USP54-205ENST00000424265 PAWRQ96IZ0 340 aaKnown RBP9.91□□□□□ -0.82
USP54-205ENST00000424265 RIPK2O43353 540 aa9.91□□□□□ -0.82
USP54-205ENST00000424265 MAGEC1O60732 1142 aa9.91□□□□□ -0.82
USP54-205ENST00000424265 NOS1APO75052 506 aaPredicted RBP9.91□□□□□ -0.82
USP54-205ENST00000424265 XYLBO75191 536 aa9.91□□□□□ -0.82
USP54-205ENST00000424265 RHOBTB1O94844 696 aa9.91□□□□□ -0.82
USP54-205ENST00000424265 APOA1P02647 267 aa9.91□□□□□ -0.82
USP54-205ENST00000424265 HSMCR30P0CW71 290 aa9.91□□□□□ -0.82
USP54-205ENST00000424265 ALFQ53S48 1182 aa9.91□□□□□ -0.82
USP54-205ENST00000424265 SAMD11Q96NU1 681 aa9.91□□□□□ -0.82
USP54-205ENST00000424265 SEMA4AQ9H3S1 761 aa9.91□□□□□ -0.82
USP54-205ENST00000424265 ERVK-5Q9HDB9 667 aa9.91□□□□□ -0.82
USP54-205ENST00000424265 STON1Q9Y6Q2 735 aa9.91□□□□□ -0.82
USP54-205ENST00000424265 CCDC85CA6NKD9 419 aa9.91□□□□□ -0.82
USP54-205ENST00000424265 PSTPIP1O43586 416 aa9.91□□□□□ -0.82
USP54-205ENST00000424265 EDIL3O43854 480 aa9.91□□□□□ -0.82
USP54-205ENST00000424265 PTPN1P18031 435 aaKnown RBP9.91□□□□□ -0.82
USP54-205ENST00000424265 ADSSP30520 456 aa9.91□□□□□ -0.82
USP54-205ENST00000424265 NR4A2P43354 598 aa9.91□□□□□ -0.82
USP54-205ENST00000424265 SULT1E1P49888 294 aa9.91□□□□□ -0.82
USP54-205ENST00000424265 CENPCQ03188 943 aa9.91□□□□□ -0.82
USP54-205ENST00000424265 PGS1Q32NB8 556 aa9.91□□□□□ -0.82
USP54-205ENST00000424265 CYP4A22Q5TCH4 519 aa9.91□□□□□ -0.82
USP54-205ENST00000424265 PXDC1Q5TGL8 231 aa9.91□□□□□ -0.82
USP54-205ENST00000424265 PLEKHM3Q6ZWE6 761 aa9.91□□□□□ -0.82
USP54-205ENST00000424265 C12orf50Q8NA57 414 aaPredicted RBP9.91□□□□□ -0.82
USP54-205ENST00000424265 OR5B17Q8NGF7 314 aa9.91□□□□□ -0.82
USP54-205ENST00000424265 SLC35G2Q8TBE7 412 aa9.91□□□□□ -0.82
USP54-205ENST00000424265 SPPL2BQ8TCT7 592 aa9.91□□□□□ -0.82
USP54-205ENST00000424265 CPA5Q8WXQ8 436 aa9.91□□□□□ -0.82
USP54-205ENST00000424265 FIG4Q92562 907 aa9.91□□□□□ -0.82
USP54-205ENST00000424265 DCUN1D1Q96GG9 259 aa9.91□□□□□ -0.82
USP54-205ENST00000424265 STRA6Q9BX79 667 aa9.91□□□□□ -0.82
USP54-205ENST00000424265 WDR12Q9GZL7 423 aaKnown RBP9.91□□□□□ -0.82
USP54-205ENST00000424265 MKRN2Q9H000 416 aaKnown RBP9.91□□□□□ -0.82
USP54-205ENST00000424265 TRPM5Q9NZQ8 1165 aa9.91□□□□□ -0.82
USP54-205ENST00000424265 SMG5Q9UPR3 1016 aaKnown RBP9.91□□□□□ -0.82
USP54-205ENST00000424265 SYNJ2BP-COX16A0A087WUM0 186 aa9.9□□□□□ -0.82
USP54-205ENST00000424265 C12orf71A8MTZ7 269 aa9.9□□□□□ -0.82
USP54-205ENST00000424265 C2CD2LO14523 706 aa9.9□□□□□ -0.82
USP54-205ENST00000424265 RAD51BO15315 384 aa9.9□□□□□ -0.82
USP54-205ENST00000424265 GPR32O75388 356 aa9.9□□□□□ -0.82
USP54-205ENST00000424265 CYBBP04839 570 aa9.9□□□□□ -0.82
USP54-205ENST00000424265 ADH1AP07327 375 aa9.9□□□□□ -0.82
USP54-205ENST00000424265 ATP5OP48047 213 aa9.9□□□□□ -0.82
USP54-205ENST00000424265 SERPINB10P48595 397 aa9.9□□□□□ -0.82
USP54-205ENST00000424265 GBE1Q04446 702 aa9.9□□□□□ -0.82
USP54-205ENST00000424265 ZCCHC7Q8N3Z6 543 aaKnown RBP9.9□□□□□ -0.82
USP54-205ENST00000424265 ARL6IP6Q8N6S5 226 aa9.9□□□□□ -0.82
USP54-205ENST00000424265 Q8N9G6 341 aaPredicted RBP9.9□□□□□ -0.82
USP54-205ENST00000424265 PTCD2Q8WV60 388 aaKnown RBP9.9□□□□□ -0.82
USP54-205ENST00000424265 MRPS31Q92665 395 aaKnown RBP9.9□□□□□ -0.82
USP54-205ENST00000424265 LDHAL6BQ9BYZ2 381 aaPredicted RBP9.9□□□□□ -0.82
USP54-205ENST00000424265 RGS18Q9NS28 235 aa9.9□□□□□ -0.82
USP54-205ENST00000424265 COX16Q9P0S2 106 aa9.9□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms