RNA–Protein interactions for RNA: ENST00000421124.6

DDR1-233, Transcript of discoidin domain receptor tyrosine kinase 1, human

TSL 5

Gene DDR1, Length 800 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDR1-233	ENST00000421124	GDPD4	Q6W3E5	623 aa		18.83	■□□□□ 0.6
DDR1-233	ENST00000421124	BBS12	Q6ZW61	710 aa		18.83	■□□□□ 0.6
DDR1-233	ENST00000421124	ERN2	Q76MJ5	926 aa	Known RBP	18.83	■□□□□ 0.6
DDR1-233	ENST00000421124	CCDC13	Q8IYE1	715 aa		18.83	■□□□□ 0.6
DDR1-233	ENST00000421124	TEX26	Q8N6G2	289 aa		18.83	■□□□□ 0.6
DDR1-233	ENST00000421124	OR2T34	Q8NGX1	318 aa		18.83	■□□□□ 0.6
DDR1-233	ENST00000421124	VOPP1	Q96AW1	172 aa		18.83	■□□□□ 0.6
DDR1-233	ENST00000421124	KLHL32	Q96NJ5	620 aa		18.83	■□□□□ 0.6
DDR1-233	ENST00000421124	OLFM3	Q96PB7	478 aa		18.83	■□□□□ 0.6
DDR1-233	ENST00000421124	LGMN	Q99538	433 aa		18.83	■□□□□ 0.6
DDR1-233	ENST00000421124	HEMGN	Q9BXL5	484 aa		18.83	■□□□□ 0.6
DDR1-233	ENST00000421124	OSBPL8	Q9BZF1	889 aa		18.83	■□□□□ 0.6
DDR1-233	ENST00000421124	BRD8	Q9H0E9	1235 aa		18.83	■□□□□ 0.6
DDR1-233	ENST00000421124	ARRDC1-AS1	Q9H2J1	176 aa		18.83	■□□□□ 0.6
DDR1-233	ENST00000421124	KDM4C	Q9H3R0	1056 aa		18.83	■□□□□ 0.6
DDR1-233	ENST00000421124	C6orf106	Q9H6K1	298 aa	Predicted RBP	18.83	■□□□□ 0.6
DDR1-233	ENST00000421124	BCLAF3	A2AJT9	711 aa	Known RBP	18.82	■□□□□ 0.6
DDR1-233	ENST00000421124	FAM47DP	A6NHR8	397 aa		18.82	■□□□□ 0.6
DDR1-233	ENST00000421124	METTL12	A8MUP2	240 aa		18.82	■□□□□ 0.6
DDR1-233	ENST00000421124	MEI4	A8MW99	385 aa		18.82	■□□□□ 0.6
DDR1-233	ENST00000421124	PLRG1	O43660	514 aa	Known RBP	18.82	■□□□□ 0.6
DDR1-233	ENST00000421124	PYGM	P11217	842 aa		18.82	■□□□□ 0.6
DDR1-233	ENST00000421124	CCNB1	P14635	433 aa		18.82	■□□□□ 0.6
DDR1-233	ENST00000421124	PECAM1	P16284	738 aa	Predicted RBP	18.82	■□□□□ 0.6
DDR1-233	ENST00000421124	MAPK8	P45983	427 aa		18.82	■□□□□ 0.6
DDR1-233	ENST00000421124	SCNN1B	P51168	640 aa		18.82	■□□□□ 0.6
DDR1-233	ENST00000421124	NEK3	P51956	506 aa		18.82	■□□□□ 0.6
DDR1-233	ENST00000421124	DCAF12L1	Q5VU92	463 aa		18.82	■□□□□ 0.6
DDR1-233	ENST00000421124	NCEH1	Q6PIU2	408 aa		18.82	■□□□□ 0.6
DDR1-233	ENST00000421124	PARS2	Q7L3T8	475 aa	Known RBP	18.82	■□□□□ 0.6
DDR1-233	ENST00000421124	PGBD5	Q8N414	524 aa		18.82	■□□□□ 0.6
DDR1-233	ENST00000421124	TRIM58	Q8NG06	486 aa		18.82	■□□□□ 0.6
DDR1-233	ENST00000421124	LRRN4	Q8WUT4	740 aa		18.82	■□□□□ 0.6
DDR1-233	ENST00000421124	P3H4	Q92791	437 aa		18.82	■□□□□ 0.6
DDR1-233	ENST00000421124	TUBGCP5	Q96RT8	1024 aa		18.82	■□□□□ 0.6
DDR1-233	ENST00000421124	MGME1	Q9BQP7	344 aa		18.82	■□□□□ 0.6
DDR1-233	ENST00000421124	NT5M	Q9NPB1	228 aa		18.82	■□□□□ 0.6
DDR1-233	ENST00000421124	HAUS2	Q9NVX0	235 aa		18.82	■□□□□ 0.6
DDR1-233	ENST00000421124	SAE1	Q9UBE0	346 aa	Predicted RBP	18.82	■□□□□ 0.6
DDR1-233	ENST00000421124	PI4KA	P42356	2102 aa		18.82	■□□□□ 0.6
DDR1-233	ENST00000421124	C16orf96	A6NNT2	1141 aa		18.81	■□□□□ 0.6
DDR1-233	ENST00000421124	ZSCAN12	O43309	604 aa		18.81	■□□□□ 0.6
DDR1-233	ENST00000421124	LRP3	O75074	770 aa		18.81	■□□□□ 0.6
DDR1-233	ENST00000421124	NEBL	O76041	1014 aa		18.81	■□□□□ 0.6
DDR1-233	ENST00000421124	PIGN	O95427	931 aa		18.81	■□□□□ 0.6
DDR1-233	ENST00000421124	ITPKA	P23677	461 aa		18.81	■□□□□ 0.6
DDR1-233	ENST00000421124	MPL	P40238	635 aa		18.81	■□□□□ 0.6
DDR1-233	ENST00000421124	DPP6	P42658	865 aa		18.81	■□□□□ 0.6
DDR1-233	ENST00000421124	AP1S1	P61966	158 aa		18.81	■□□□□ 0.6
DDR1-233	ENST00000421124	AP1B1	Q10567	949 aa		18.81	■□□□□ 0.6
DDR1-233	ENST00000421124	ZNF211	Q13398	564 aa	Predicted RBP	18.81	■□□□□ 0.6
DDR1-233	ENST00000421124	WDR45B	Q5MNZ6	344 aa		18.81	■□□□□ 0.6
DDR1-233	ENST00000421124	KIAA0895L	Q68EN5	471 aa		18.81	■□□□□ 0.6
DDR1-233	ENST00000421124	AADACL2	Q6P093	401 aa		18.81	■□□□□ 0.6
DDR1-233	ENST00000421124	FBXL19	Q6PCT2	694 aa		18.81	■□□□□ 0.6
DDR1-233	ENST00000421124	PIGK	Q92643	395 aa		18.81	■□□□□ 0.6
DDR1-233	ENST00000421124	NUDCD1	Q96RS6	583 aa		18.81	■□□□□ 0.6
DDR1-233	ENST00000421124	HERPUD2	Q9BSE4	406 aa		18.81	■□□□□ 0.6
DDR1-233	ENST00000421124	ATP13A3	Q9H7F0	1226 aa		18.81	■□□□□ 0.6
DDR1-233	ENST00000421124	AMACR	Q9UHK6	382 aa		18.81	■□□□□ 0.6
DDR1-233	ENST00000421124	PLXNA2	O75051	1894 aa		18.81	■□□□□ 0.6
DDR1-233	ENST00000421124	FAM186A	A6NE01	2351 aa		18.81	■□□□□ 0.6
DDR1-233	ENST00000421124	WDR87	Q6ZQQ6	2873 aa		18.8	■□□□□ 0.6
DDR1-233	ENST00000421124	RIF1	Q5UIP0	2472 aa	Known RBP	18.8	■□□□□ 0.6
DDR1-233	ENST00000421124	FRYL	O94915	3013 aa		18.8	■□□□□ 0.6
DDR1-233	ENST00000421124	DOCK9	Q9BZ29	2069 aa		18.8	■□□□□ 0.6
DDR1-233	ENST00000421124	TBC1D3D	A0A087WVF3	549 aa		18.8	■□□□□ 0.6
DDR1-233	ENST00000421124	TBC1D3I	A0A087WXS9	549 aa		18.8	■□□□□ 0.6
DDR1-233	ENST00000421124	TBC1D3E	A0A087X179	549 aa		18.8	■□□□□ 0.6
DDR1-233	ENST00000421124	TBC1D3K	A0A087X1G2	549 aa		18.8	■□□□□ 0.6
DDR1-233	ENST00000421124	TBC1D3F	A6NER0	549 aa	Predicted RBP	18.8	■□□□□ 0.6
DDR1-233	ENST00000421124	TBC1D3L	B9A6J9	549 aa		18.8	■□□□□ 0.6
DDR1-233	ENST00000421124	APOC4-APOC2	K7ER74	178 aa		18.8	■□□□□ 0.6
DDR1-233	ENST00000421124	FSBP	O95073	299 aa		18.8	■□□□□ 0.6
DDR1-233	ENST00000421124	APOC2	P02655	101 aa		18.8	■□□□□ 0.6
DDR1-233	ENST00000421124	TBC1D3H	P0C7X1	549 aa		18.8	■□□□□ 0.6
DDR1-233	ENST00000421124	ADRB3	P13945	408 aa		18.8	■□□□□ 0.6
DDR1-233	ENST00000421124	CR2	P20023	1033 aa		18.8	■□□□□ 0.6
DDR1-233	ENST00000421124	SERPINA4	P29622	427 aa		18.8	■□□□□ 0.6
DDR1-233	ENST00000421124	TAS2R38	P59533	333 aa		18.8	■□□□□ 0.6
DDR1-233	ENST00000421124	MAX	P61244	160 aa		18.8	■□□□□ 0.6
DDR1-233	ENST00000421124	IFI35	P80217	286 aa	Predicted RBP	18.8	■□□□□ 0.6
DDR1-233	ENST00000421124	BCL2L1	Q07817	233 aa		18.8	■□□□□ 0.6
DDR1-233	ENST00000421124	SPEM2	Q0P670	501 aa		18.8	■□□□□ 0.6
DDR1-233	ENST00000421124	RALGPS1	Q5JS13	557 aa		18.8	■□□□□ 0.6
DDR1-233	ENST00000421124	MEI1	Q5TIA1	1274 aa		18.8	■□□□□ 0.6
DDR1-233	ENST00000421124	CCDC181	Q5TID7	509 aa		18.8	■□□□□ 0.6
DDR1-233	ENST00000421124	TBC1D3G	Q6DHY5	549 aa		18.8	■□□□□ 0.6
DDR1-233	ENST00000421124	TBC1D3C	Q6IPX1	549 aa		18.8	■□□□□ 0.6
DDR1-233	ENST00000421124	SYT12	Q8IV01	421 aa		18.8	■□□□□ 0.6
DDR1-233	ENST00000421124	RGL4	Q8IZJ4	473 aa		18.8	■□□□□ 0.6
DDR1-233	ENST00000421124	TBC1D3	Q8IZP1	549 aa	Predicted RBP	18.8	■□□□□ 0.6
DDR1-233	ENST00000421124	DCLK2	Q8N568	766 aa		18.8	■□□□□ 0.6
DDR1-233	ENST00000421124	SNX19	Q92543	992 aa		18.8	■□□□□ 0.6
DDR1-233	ENST00000421124	HAUS1	Q96CS2	278 aa		18.8	■□□□□ 0.6
DDR1-233	ENST00000421124	ZNF641	Q96N77	438 aa	Predicted RBP	18.8	■□□□□ 0.6
DDR1-233	ENST00000421124	SUV39H2	Q9H5I1	410 aa		18.8	■□□□□ 0.6
DDR1-233	ENST00000421124	PREB	Q9HCU5	417 aa		18.8	■□□□□ 0.6
DDR1-233	ENST00000421124	SCUBE2	Q9NQ36	999 aa		18.8	■□□□□ 0.6
DDR1-233	ENST00000421124	RBM22	Q9NW64	420 aa	Known RBP eCLIP	18.8	■□□□□ 0.6	2e-7	■■■□□ 16.7

Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms