RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 CXCR3P49682 368 aa13.14□□□□□ -0.31
LINC00339-202ENST00000416769 SULT1E1P49888 294 aa13.14□□□□□ -0.31
LINC00339-202ENST00000416769 DNA2P51530 1060 aa13.14□□□□□ -0.31
LINC00339-202ENST00000416769 OXCT1P55809 520 aa13.14□□□□□ -0.31
LINC00339-202ENST00000416769 TMPRSS3P57727 454 aa13.14□□□□□ -0.31
LINC00339-202ENST00000416769 BPIFB4P59827 614 aa13.14□□□□□ -0.31
LINC00339-202ENST00000416769 ARF5P84085 180 aa13.14□□□□□ -0.31
LINC00339-202ENST00000416769 SLC6A3Q01959 620 aa13.14□□□□□ -0.31
LINC00339-202ENST00000416769 MEA1Q16626 185 aa13.14□□□□□ -0.31
LINC00339-202ENST00000416769 EFHC1Q5JVL4 640 aa13.14□□□□□ -0.31
LINC00339-202ENST00000416769 LEKR1Q6ZMV7 388 aa13.14□□□□□ -0.31
LINC00339-202ENST00000416769 SLC26A9Q7LBE3 791 aa13.14□□□□□ -0.31
LINC00339-202ENST00000416769 DCAF4L2Q8NA75 395 aa13.14□□□□□ -0.31
LINC00339-202ENST00000416769 LSM14AQ8ND56 463 aaKnown RBP13.14□□□□□ -0.31
LINC00339-202ENST00000416769 LMX1AQ8TE12 382 aa13.14□□□□□ -0.31
LINC00339-202ENST00000416769 SYN2Q92777 582 aaPredicted RBP13.14□□□□□ -0.31
LINC00339-202ENST00000416769 SLC17A9Q9BYT1 436 aa13.14□□□□□ -0.31
LINC00339-202ENST00000416769 TM6SF2Q9BZW4 377 aa13.14□□□□□ -0.31
LINC00339-202ENST00000416769 AIPL1Q9NZN9 384 aa13.14□□□□□ -0.31
LINC00339-202ENST00000416769 ENTPD2Q9Y5L3 495 aa13.14□□□□□ -0.31
LINC00339-202ENST00000416769 SPTA1P02549 2419 aa13.13□□□□□ -0.31
LINC00339-202ENST00000416769 IGLON5A6NGN9 336 aa13.13□□□□□ -0.31
LINC00339-202ENST00000416769 DRGXA6NNA5 263 aa13.13□□□□□ -0.31
LINC00339-202ENST00000416769 AKR1B15C9JRZ8 316 aaPredicted RBP13.13□□□□□ -0.31
LINC00339-202ENST00000416769 F8VZ95 297 aa13.13□□□□□ -0.31
LINC00339-202ENST00000416769 AGRPO00253 132 aa13.13□□□□□ -0.31
LINC00339-202ENST00000416769 MUSKO15146 869 aa13.13□□□□□ -0.31
LINC00339-202ENST00000416769 CSF2P04141 144 aa13.13□□□□□ -0.31
LINC00339-202ENST00000416769 PRNPP04156 253 aa13.13□□□□□ -0.31
LINC00339-202ENST00000416769 GLI1P08151 1106 aa13.13□□□□□ -0.31
LINC00339-202ENST00000416769 CCDC172P0C7W6 258 aa13.13□□□□□ -0.31
LINC00339-202ENST00000416769 ITIH2P19823 946 aa13.13□□□□□ -0.31
LINC00339-202ENST00000416769 NOS2P35228 1153 aa13.13□□□□□ -0.31
LINC00339-202ENST00000416769 CLCN1P35523 988 aa13.13□□□□□ -0.31
LINC00339-202ENST00000416769 KRT9P35527 623 aa13.13□□□□□ -0.31
LINC00339-202ENST00000416769 FLT3P36888 993 aa13.13□□□□□ -0.31
LINC00339-202ENST00000416769 ACVRL1P37023 503 aa13.13□□□□□ -0.31
LINC00339-202ENST00000416769 CCNHP51946 323 aaPredicted RBP13.13□□□□□ -0.31
LINC00339-202ENST00000416769 NEK3P51956 506 aa13.13□□□□□ -0.31
LINC00339-202ENST00000416769 PDE1CQ14123 709 aaPredicted RBP13.13□□□□□ -0.31
LINC00339-202ENST00000416769 NEK5Q6P3R8 708 aa13.13□□□□□ -0.31
LINC00339-202ENST00000416769 KYAT3Q6YP21 454 aaKnown RBP13.13□□□□□ -0.31
LINC00339-202ENST00000416769 FAM181AQ8N9Y4 354 aa13.13□□□□□ -0.31
LINC00339-202ENST00000416769 OR8K1Q8NGG5 319 aa13.13□□□□□ -0.31
LINC00339-202ENST00000416769 C2orf49Q9BVC5 232 aaPredicted RBP13.13□□□□□ -0.31
LINC00339-202ENST00000416769 HDAC8Q9BY41 377 aa13.13□□□□□ -0.31
LINC00339-202ENST00000416769 ABCG4Q9H172 646 aa13.13□□□□□ -0.31
LINC00339-202ENST00000416769 DYRK4Q9NR20 520 aa13.13□□□□□ -0.31
LINC00339-202ENST00000416769 NDFIP2Q9NV92 336 aa13.13□□□□□ -0.31
LINC00339-202ENST00000416769 PCDHGC3Q9UN70 934 aa13.13□□□□□ -0.31
LINC00339-202ENST00000416769 LRRK1Q38SD2 2015 aa13.12□□□□□ -0.31
LINC00339-202ENST00000416769 SPTY2D1-AS1A0A0U1RR47 76 aa13.12□□□□□ -0.31
LINC00339-202ENST00000416769 LRRC53A6NM62 1247 aa13.12□□□□□ -0.31
LINC00339-202ENST00000416769 GOLGA6L6A8MZA4 724 aa13.12□□□□□ -0.31
LINC00339-202ENST00000416769 SRGAP2O75044 1071 aa13.12□□□□□ -0.31
LINC00339-202ENST00000416769 FERP16591 822 aa13.12□□□□□ -0.31
LINC00339-202ENST00000416769 JUNDP17535 347 aa13.12□□□□□ -0.31
LINC00339-202ENST00000416769 HNRNPH3P31942 346 aaKnown RBP13.12□□□□□ -0.31
LINC00339-202ENST00000416769 SERPINH1P50454 418 aaKnown RBP13.12□□□□□ -0.31
LINC00339-202ENST00000416769 KRT83P78385 493 aa13.12□□□□□ -0.31
LINC00339-202ENST00000416769 SKOR1P84550 965 aa13.12□□□□□ -0.31
LINC00339-202ENST00000416769 PTK2Q05397 1052 aa13.12□□□□□ -0.31
LINC00339-202ENST00000416769 TSR1Q2NL82 804 aaKnown RBP13.12□□□□□ -0.31
LINC00339-202ENST00000416769 HS1BP3Q53T59 392 aa13.12□□□□□ -0.31
LINC00339-202ENST00000416769 KCTD16Q68DU8 428 aa13.12□□□□□ -0.31
LINC00339-202ENST00000416769 IRF2BP2Q7Z5L9 587 aa13.12□□□□□ -0.31
LINC00339-202ENST00000416769 B3GNT8Q7Z7M8 397 aa13.12□□□□□ -0.31
LINC00339-202ENST00000416769 PARGQ86W56 976 aa13.12□□□□□ -0.31
LINC00339-202ENST00000416769 CNGA4Q8IV77 575 aa13.12□□□□□ -0.31
LINC00339-202ENST00000416769 SLC35F3Q8IY50 421 aa13.12□□□□□ -0.31
LINC00339-202ENST00000416769 ZDHHC6Q9H6R6 413 aa13.12□□□□□ -0.31
LINC00339-202ENST00000416769 WDCPQ9H6R7 721 aa13.12□□□□□ -0.31
LINC00339-202ENST00000416769 SYNDIG1Q9H7V2 258 aa13.12□□□□□ -0.31
LINC00339-202ENST00000416769 RABGEF1Q9UJ41 708 aa13.12□□□□□ -0.31
LINC00339-202ENST00000416769 CHD5Q8TDI0 1954 aa13.12□□□□□ -0.31
LINC00339-202ENST00000416769 IGLV3-10A0A075B6K4 115 aa13.11□□□□□ -0.31
LINC00339-202ENST00000416769 EFSO43281 561 aa13.11□□□□□ -0.31
LINC00339-202ENST00000416769 AQP9O43315 295 aa13.11□□□□□ -0.31
LINC00339-202ENST00000416769 MFAP3LO75121 409 aa13.11□□□□□ -0.31
LINC00339-202ENST00000416769 GFPT2O94808 682 aa13.11□□□□□ -0.31
LINC00339-202ENST00000416769 GP1BAP07359 652 aa13.11□□□□□ -0.31
LINC00339-202ENST00000416769 ALPPL2P10696 532 aa13.11□□□□□ -0.31
LINC00339-202ENST00000416769 ITGB7P26010 798 aa13.11□□□□□ -0.31
LINC00339-202ENST00000416769 OR1E1P30953 314 aa13.11□□□□□ -0.31
LINC00339-202ENST00000416769 L1CAMP32004 1257 aa13.11□□□□□ -0.31
LINC00339-202ENST00000416769 IGFALSP35858 605 aa13.11□□□□□ -0.31
LINC00339-202ENST00000416769 ADKP55263 362 aaKnown RBP13.11□□□□□ -0.31
LINC00339-202ENST00000416769 ERVPABLB-1P60509 514 aa13.11□□□□□ -0.31
LINC00339-202ENST00000416769 HNRNPKP61978 463 aaKnown RBP eCLIP13.11□□□□□ -0.31
LINC00339-202ENST00000416769 RHDQ02161 417 aa13.11□□□□□ -0.31
LINC00339-202ENST00000416769 DEUP1Q05D60 604 aa13.11□□□□□ -0.31
LINC00339-202ENST00000416769 VAC14Q08AM6 782 aa13.11□□□□□ -0.31
LINC00339-202ENST00000416769 CLN3Q13286 438 aa13.11□□□□□ -0.31
LINC00339-202ENST00000416769 BROXQ5VW32 411 aa13.11□□□□□ -0.31
LINC00339-202ENST00000416769 TAF3Q5VWG9 929 aa13.11□□□□□ -0.31
LINC00339-202ENST00000416769 ZCCHC8Q6NZY4 707 aaKnown RBP13.11□□□□□ -0.31
LINC00339-202ENST00000416769 PHLDB2Q86SQ0 1253 aa13.11□□□□□ -0.31
LINC00339-202ENST00000416769 SETD3Q86TU7 594 aaPredicted RBP13.11□□□□□ -0.31
LINC00339-202ENST00000416769 FAM131BQ86XD5 332 aa13.11□□□□□ -0.31
LINC00339-202ENST00000416769 SPC24Q8NBT2 197 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms