RNA–Protein interactions for RNA: ENST00000414978.5

MCF2-204, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,813 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-204ENST00000414978 MCM2P49736 904 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 SHC2P98077 582 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 UBXN1Q04323 297 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 IL13RA2Q14627 380 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 EIF4HQ15056 248 aaKnown RBP2.68□□□□□ -1.98
MCF2-204ENST00000414978 ZNF750Q32MQ0 723 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 ZNF628Q5EBL2 1059 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 PRSS36Q5K4E3 855 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 ARL6IP4Q66PJ3 421 aaKnown RBP2.68□□□□□ -1.98
MCF2-204ENST00000414978 KIAA0930Q6ICG6 404 aaPredicted RBP2.68□□□□□ -1.98
MCF2-204ENST00000414978 ZNF790Q6PG37 636 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 SLC23A3Q6PIS1 610 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 LRRC8DQ7L1W4 858 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 RALYLQ86SE5 291 aaKnown RBP2.68□□□□□ -1.98
MCF2-204ENST00000414978 OR8H3Q8N146 312 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 FITM2Q8N6M3 262 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 U2AF1L4Q8WU68 220 aaKnown RBP2.68□□□□□ -1.98
MCF2-204ENST00000414978 CNOT9Q92600 299 aaKnown RBP2.68□□□□□ -1.98
MCF2-204ENST00000414978 RSC1A1Q92681 617 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 MR1Q95460 341 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 SMARCE1Q969G3 411 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP2.68□□□□□ -1.98
MCF2-204ENST00000414978 ZCWPW1Q9H0M4 648 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 DLGAP2Q9P1A6 1054 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 ZBED9Q6R2W3 1325 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 PTPRSQ13332 1948 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 H0YAE9 185 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 CEP104O60308 925 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 ECE2O60344 883 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 NKX2-2O95096 273 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 BAG2O95816 211 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 SCGB1D1O95968 90 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 PLATP00750 562 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 HPXP02790 462 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 SKILP12757 684 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 UQCRC1P31930 480 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 KCNJ1P48048 391 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 EFNA5P52803 228 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 CSE1LP55060 971 aaKnown RBP2.68□□□□□ -1.98
MCF2-204ENST00000414978 COASYQ13057 564 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 VEPH1Q14D04 833 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 SF3B3Q15393 1217 aaKnown RBP2.68□□□□□ -1.98
MCF2-204ENST00000414978 FAM187BQ17R55 369 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 TMEM31Q5JXX7 168 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 TMEM200BQ69YZ2 307 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 Q7L0L9 218 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 TAOK1Q7L7X3 1001 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 ZNF804AQ7Z570 1209 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 CEP57L1Q8IYX8 460 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 KYQ8NBH2 561 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 CADM4Q8NFZ8 388 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 OSCP1Q8WVF1 389 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 KRT35Q92764 455 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 MIEF2Q96C03 454 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 KLHL29Q96CT2 875 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 PABPC5Q96DU9 382 aaKnown RBP2.68□□□□□ -1.98
MCF2-204ENST00000414978 RBM15Q96T37 977 aaKnown RBP eCLIP2.68□□□□□ -1.98
MCF2-204ENST00000414978 PAFAH2Q99487 392 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 MESP1Q9BRJ9 268 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 ANP32EQ9BTT0 268 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 GOLPH3LQ9H4A5 285 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 MYOZ2Q9NPC6 264 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 ARGLU1Q9NWB6 273 aaPredicted RBP2.68□□□□□ -1.98
MCF2-204ENST00000414978 CHCHD3Q9NX63 227 aaKnown RBP2.68□□□□□ -1.98
MCF2-204ENST00000414978 NDUFAF4Q9P032 175 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 HDAC6Q9UBN7 1215 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 DKK4Q9UBT3 224 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 KLQ9UEF7 1012 aa2.68□□□□□ -1.98
MCF2-204ENST00000414978 SMIM30A4D0T7 59 aa2.67□□□□□ -1.98
MCF2-204ENST00000414978 UNC119BA6NIH7 251 aa2.67□□□□□ -1.98
MCF2-204ENST00000414978 AQP7P3A6NL99 342 aa2.67□□□□□ -1.98
MCF2-204ENST00000414978 TBKBP1A7MCY6 615 aa2.67□□□□□ -1.98
MCF2-204ENST00000414978 C17orf100A8MU93 164 aa2.67□□□□□ -1.98
MCF2-204ENST00000414978 SEPT4O43236 478 aa2.67□□□□□ -1.98
MCF2-204ENST00000414978 JUNP05412 331 aaKnown RBP2.67□□□□□ -1.98
MCF2-204ENST00000414978 PPP2R1AP30153 589 aa2.67□□□□□ -1.98
MCF2-204ENST00000414978 SKIV2L2P42285 1042 aaKnown RBP2.67□□□□□ -1.98
MCF2-204ENST00000414978 NDUFV1P49821 464 aa2.67□□□□□ -1.98
MCF2-204ENST00000414978 HSD17B4P51659 736 aa2.67□□□□□ -1.98
MCF2-204ENST00000414978 ZNF131P52739 623 aa2.67□□□□□ -1.98
MCF2-204ENST00000414978 FAM189BP81408 668 aa2.67□□□□□ -1.98
MCF2-204ENST00000414978 DEUP1Q05D60 604 aa2.67□□□□□ -1.98
MCF2-204ENST00000414978 WDR43Q15061 677 aaKnown RBP eCLIP2.67□□□□□ -1.98
MCF2-204ENST00000414978 PTPN14Q15678 1187 aa2.67□□□□□ -1.98
MCF2-204ENST00000414978 ELAVL1Q15717 326 aaKnown RBP2.67□□□□□ -1.98
MCF2-204ENST00000414978 CCDC158Q5M9N0 1113 aa2.67□□□□□ -1.98
MCF2-204ENST00000414978 NAPEPLDQ6IQ20 393 aa2.67□□□□□ -1.98
MCF2-204ENST00000414978 LRRC8EQ6NSJ5 796 aa2.67□□□□□ -1.98
MCF2-204ENST00000414978 MTHFD1LQ6UB35 978 aa2.67□□□□□ -1.98
MCF2-204ENST00000414978 OLFM4Q6UX06 510 aa2.67□□□□□ -1.98
MCF2-204ENST00000414978 C15orf52Q6ZUT6 534 aaKnown RBP2.67□□□□□ -1.98
MCF2-204ENST00000414978 ANKRD35Q8N283 1001 aa2.67□□□□□ -1.98
MCF2-204ENST00000414978 MOSPD2Q8NHP6 518 aa2.67□□□□□ -1.98
MCF2-204ENST00000414978 DENND1AQ8TEH3 1009 aa2.67□□□□□ -1.98
MCF2-204ENST00000414978 ST8SIA2Q92186 375 aa2.67□□□□□ -1.98
MCF2-204ENST00000414978 SCAMP4Q969E2 229 aa2.67□□□□□ -1.98
MCF2-204ENST00000414978 ALG14Q96F25 216 aa2.67□□□□□ -1.98
MCF2-204ENST00000414978 TTPALQ9BTX7 342 aa2.67□□□□□ -1.98
MCF2-204ENST00000414978 BARX1Q9HBU1 254 aaPredicted RBP2.67□□□□□ -1.98
MCF2-204ENST00000414978 VPS51Q9UID3 782 aa2.67□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms