RNA–Protein interactions for RNA: ENST00000413725.5

SF1-206, Transcript of splicing factor 1, human

TSL 2

Gene SF1, Length 843 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF1-206	ENST00000413725	KLHL8	Q9P2G9	620 aa	Predicted RBP	13.33	□□□□□ -0.28
SF1-206	ENST00000413725	TRHDE	Q9UKU6	1024 aa		13.33	□□□□□ -0.28
SF1-206	ENST00000413725	DNPEP	Q9ULA0	475 aa		13.33	□□□□□ -0.28
SF1-206	ENST00000413725	PPM1H	Q9ULR3	514 aa		13.33	□□□□□ -0.28
SF1-206	ENST00000413725	ATP8A1	Q9Y2Q0	1164 aa		13.33	□□□□□ -0.28
SF1-206	ENST00000413725	WASF2	Q9Y6W5	498 aa		13.33	□□□□□ -0.28
SF1-206	ENST00000413725	LOC107983988	A0A1B0GUW6	1196 aa	Predicted RBP	13.32	□□□□□ -0.28
SF1-206	ENST00000413725	KPNA3	O00505	521 aa	Predicted RBP	13.32	□□□□□ -0.28
SF1-206	ENST00000413725	ZNF185	O15231	689 aa		13.32	□□□□□ -0.28
SF1-206	ENST00000413725	MID1	O15344	667 aa		13.32	□□□□□ -0.28
SF1-206	ENST00000413725	INSIG1	O15503	277 aa		13.32	□□□□□ -0.28
SF1-206	ENST00000413725	CTSL	P07711	333 aa		13.32	□□□□□ -0.28
SF1-206	ENST00000413725	SP9	P0CG40	484 aa		13.32	□□□□□ -0.28
SF1-206	ENST00000413725	CR2	P20023	1033 aa		13.32	□□□□□ -0.28
SF1-206	ENST00000413725	SERPINA4	P29622	427 aa		13.32	□□□□□ -0.28
SF1-206	ENST00000413725	SLC8A1	P32418	973 aa		13.32	□□□□□ -0.28
SF1-206	ENST00000413725	PAFAH1B1	P43034	410 aa		13.32	□□□□□ -0.28
SF1-206	ENST00000413725	FNTB	P49356	437 aa		13.32	□□□□□ -0.28
SF1-206	ENST00000413725	CCDC15	Q0P6D6	951 aa		13.32	□□□□□ -0.28
SF1-206	ENST00000413725	SNX1	Q13596	522 aa		13.32	□□□□□ -0.28
SF1-206	ENST00000413725	SIX1	Q15475	284 aa	Predicted RBP	13.32	□□□□□ -0.28
SF1-206	ENST00000413725	USP39	Q53GS9	565 aa	Known RBP	13.32	□□□□□ -0.28
SF1-206	ENST00000413725	CFAP58	Q5T655	872 aa		13.32	□□□□□ -0.28
SF1-206	ENST00000413725	ALG1L	Q6GMV1	187 aa		13.32	□□□□□ -0.28
SF1-206	ENST00000413725	DRICH1	Q6PGQ1	229 aa	Predicted RBP	13.32	□□□□□ -0.28
SF1-206	ENST00000413725	KBTBD6	Q86V97	674 aa		13.32	□□□□□ -0.28
SF1-206	ENST00000413725	WDR5B	Q86VZ2	330 aa		13.32	□□□□□ -0.28
SF1-206	ENST00000413725	LONP2	Q86WA8	852 aa		13.32	□□□□□ -0.28
SF1-206	ENST00000413725	PAF1	Q8N7H5	531 aa		13.32	□□□□□ -0.28
SF1-206	ENST00000413725	C1orf54	Q8WWF1	131 aa		13.32	□□□□□ -0.28
SF1-206	ENST00000413725	NKD2	Q969F2	451 aa	Predicted RBP	13.32	□□□□□ -0.28
SF1-206	ENST00000413725	ZNF419	Q96HQ0	510 aa	Predicted RBP	13.32	□□□□□ -0.28
SF1-206	ENST00000413725	SPACA7	Q96KW9	195 aa		13.32	□□□□□ -0.28
SF1-206	ENST00000413725	CAPZA3	Q96KX2	299 aa		13.32	□□□□□ -0.28
SF1-206	ENST00000413725	TEKT5	Q96M29	485 aa		13.32	□□□□□ -0.28
SF1-206	ENST00000413725	OMD	Q99983	421 aa		13.32	□□□□□ -0.28
SF1-206	ENST00000413725	SEMA3C	Q99985	751 aa		13.32	□□□□□ -0.28
SF1-206	ENST00000413725	CEP41	Q9BYV8	373 aa		13.32	□□□□□ -0.28
SF1-206	ENST00000413725	C10orf88	Q9H8K7	445 aa		13.32	□□□□□ -0.28
SF1-206	ENST00000413725	RNF14	Q9UBS8	474 aa		13.32	□□□□□ -0.28
SF1-206	ENST00000413725	ZNF148	Q9UQR1	794 aa		13.32	□□□□□ -0.28
SF1-206	ENST00000413725	NCKAP1	Q9Y2A7	1128 aa		13.32	□□□□□ -0.28
SF1-206	ENST00000413725	MUC6	Q6W4X9	2439 aa		13.32	□□□□□ -0.28
SF1-206	ENST00000413725	FANCG	O15287	622 aa		13.31	□□□□□ -0.28
SF1-206	ENST00000413725	UGT2B4	P06133	528 aa		13.31	□□□□□ -0.28
SF1-206	ENST00000413725	ITGAV	P06756	1048 aa		13.31	□□□□□ -0.28
SF1-206	ENST00000413725	SERPINF2	P08697	491 aa		13.31	□□□□□ -0.28
SF1-206	ENST00000413725	CA4	P22748	312 aa		13.31	□□□□□ -0.28
SF1-206	ENST00000413725	ITGB7	P26010	798 aa		13.31	□□□□□ -0.28
SF1-206	ENST00000413725	OXTR	P30559	389 aa		13.31	□□□□□ -0.28
SF1-206	ENST00000413725	STIP1	P31948	543 aa	Known RBP	13.31	□□□□□ -0.28
SF1-206	ENST00000413725	GK	P32189	559 aa		13.31	□□□□□ -0.28
SF1-206	ENST00000413725	ACTN2	P35609	894 aa		13.31	□□□□□ -0.28
SF1-206	ENST00000413725	DSC2	Q02487	901 aa		13.31	□□□□□ -0.28
SF1-206	ENST00000413725	BCL2L1	Q07817	233 aa		13.31	□□□□□ -0.28
SF1-206	ENST00000413725	DMWD	Q09019	674 aa		13.31	□□□□□ -0.28
SF1-206	ENST00000413725	WASHC5	Q12768	1159 aa		13.31	□□□□□ -0.28
SF1-206	ENST00000413725	OASL	Q15646	514 aa	Known RBP	13.31	□□□□□ -0.28
SF1-206	ENST00000413725	ZNF805	Q5CZA5	627 aa		13.31	□□□□□ -0.28
SF1-206	ENST00000413725	ITPRIPL1	Q6GPH6	555 aa		13.31	□□□□□ -0.28
SF1-206	ENST00000413725	NCEH1	Q6PIU2	408 aa		13.31	□□□□□ -0.28
SF1-206	ENST00000413725	GDPD4	Q6W3E5	623 aa		13.31	□□□□□ -0.28
SF1-206	ENST00000413725	USP30	Q70CQ3	517 aa		13.31	□□□□□ -0.28
SF1-206	ENST00000413725	PID1	Q7Z2X4	250 aa		13.31	□□□□□ -0.28
SF1-206	ENST00000413725	ZNF567	Q8N184	647 aa		13.31	□□□□□ -0.28
SF1-206	ENST00000413725	CNTD1	Q8N815	330 aa		13.31	□□□□□ -0.28
SF1-206	ENST00000413725	ZNF641	Q96N77	438 aa	Predicted RBP	13.31	□□□□□ -0.28
SF1-206	ENST00000413725	TMEM121	Q9BTD3	319 aa		13.31	□□□□□ -0.28
SF1-206	ENST00000413725	AP1M1	Q9BXS5	423 aa		13.31	□□□□□ -0.28
SF1-206	ENST00000413725	NOD2	Q9HC29	1040 aa		13.31	□□□□□ -0.28
SF1-206	ENST00000413725	ZSCAN32	Q9NX65	697 aa		13.31	□□□□□ -0.28
SF1-206	ENST00000413725	FBXL12	Q9NXK8	326 aa		13.31	□□□□□ -0.28
SF1-206	ENST00000413725	USP36	Q9P275	1121 aa	Known RBP	13.31	□□□□□ -0.28
SF1-206	ENST00000413725	SARDH	Q9UL12	918 aa		13.31	□□□□□ -0.28
SF1-206	ENST00000413725	WDFY4	Q6ZS81	3184 aa		13.31	□□□□□ -0.28
SF1-206	ENST00000413725	TNRC6B	Q9UPQ9	1833 aa	Known RBP	13.3	□□□□□ -0.28
SF1-206	ENST00000413725		A0A1W2PP55	124 aa		13.3	□□□□□ -0.28
SF1-206	ENST00000413725		A0A1W2PQ67	120 aa		13.3	□□□□□ -0.28
SF1-206	ENST00000413725	OPHN1	O60890	802 aa		13.3	□□□□□ -0.28
SF1-206	ENST00000413725	SOCS5	O75159	536 aa		13.3	□□□□□ -0.28
SF1-206	ENST00000413725	RNASEH2A	O75792	299 aa	Known RBP	13.3	□□□□□ -0.28
SF1-206	ENST00000413725	PIGN	O95427	931 aa		13.3	□□□□□ -0.28
SF1-206	ENST00000413725	DEK	P35659	375 aa	Known RBP	13.3	□□□□□ -0.28
SF1-206	ENST00000413725	TPMT	P51580	245 aa		13.3	□□□□□ -0.28
SF1-206	ENST00000413725	LMNB2	Q03252	620 aa		13.3	□□□□□ -0.28
SF1-206	ENST00000413725	POM121L1P	Q3SYA9	428 aa		13.3	□□□□□ -0.28
SF1-206	ENST00000413725	ZC3H14	Q6PJT7	736 aa	Known RBP	13.3	□□□□□ -0.28
SF1-206	ENST00000413725	CREG2	Q8IUH2	290 aa		13.3	□□□□□ -0.28
SF1-206	ENST00000413725	HDDC3	Q8N4P3	179 aa		13.3	□□□□□ -0.28
SF1-206	ENST00000413725	ZC3H8	Q8N5P1	291 aa	Known RBP eCLIP	13.3	□□□□□ -0.28
SF1-206	ENST00000413725	PRELID2	Q8N945	189 aa		13.3	□□□□□ -0.28
SF1-206	ENST00000413725	FAM71D	Q8N9W8	422 aa		13.3	□□□□□ -0.28
SF1-206	ENST00000413725	HCAR2	Q8TDS4	363 aa		13.3	□□□□□ -0.28
SF1-206	ENST00000413725	ZNF592	Q92610	1267 aa		13.3	□□□□□ -0.28
SF1-206	ENST00000413725	NELL1	Q92832	810 aa		13.3	□□□□□ -0.28
SF1-206	ENST00000413725	MAGOHB	Q96A72	148 aa	Known RBP	13.3	□□□□□ -0.28
SF1-206	ENST00000413725	SPATA13	Q96N96	652 aa		13.3	□□□□□ -0.28
SF1-206	ENST00000413725	KLHL32	Q96NJ5	620 aa		13.3	□□□□□ -0.28
SF1-206	ENST00000413725	PPP1R2P1	Q96PQ5	205 aa		13.3	□□□□□ -0.28
SF1-206	ENST00000413725	IRF2BPL	Q9H1B7	796 aa		13.3	□□□□□ -0.28

Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms