RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 CHST4Q8NCG5 386 aa13.44□□□□□ -0.26
CCDC88A-204ENST00000413716 PDPRQ8NCN5 879 aa13.44□□□□□ -0.26
CCDC88A-204ENST00000413716 ENGASEQ8NFI3 743 aa13.44□□□□□ -0.26
CCDC88A-204ENST00000413716 FBXO9Q9UK97 447 aaPredicted RBP13.44□□□□□ -0.26
CCDC88A-204ENST00000413716 PCDHGC5Q9Y5F6 944 aa13.44□□□□□ -0.26
CCDC88A-204ENST00000413716 ZSCAN5BA6NJL1 495 aa13.44□□□□□ -0.26
CCDC88A-204ENST00000413716 AP2A2O94973 939 aa13.44□□□□□ -0.26
CCDC88A-204ENST00000413716 ZNF14P17017 642 aaPredicted RBP13.44□□□□□ -0.26
CCDC88A-204ENST00000413716 GDI2P50395 445 aaKnown RBP13.44□□□□□ -0.26
CCDC88A-204ENST00000413716 TMEM260Q9NX78 707 aa13.44□□□□□ -0.26
CCDC88A-204ENST00000413716 MRTO4Q9UKD2 239 aaKnown RBP13.44□□□□□ -0.26
CCDC88A-204ENST00000413716 DNASE1L1P49184 302 aa13.44□□□□□ -0.26
CCDC88A-204ENST00000413716 PGDP52209 483 aa13.44□□□□□ -0.26
CCDC88A-204ENST00000413716 TEX19Q8NA77 164 aa13.44□□□□□ -0.26
CCDC88A-204ENST00000413716 COA1Q9GZY4 146 aa13.44□□□□□ -0.26
CCDC88A-204ENST00000413716 MAT2BQ9NZL9 334 aa13.44□□□□□ -0.26
CCDC88A-204ENST00000413716 ZSCAN5CA6NGD5 496 aaPredicted RBP13.44□□□□□ -0.26
CCDC88A-204ENST00000413716 BTN3A1O00481 513 aa13.44□□□□□ -0.26
CCDC88A-204ENST00000413716 FDPSP14324 419 aaKnown RBP13.44□□□□□ -0.26
CCDC88A-204ENST00000413716 BCAT1P54687 386 aa13.44□□□□□ -0.26
CCDC88A-204ENST00000413716 WDR93Q6P2C0 686 aa13.44□□□□□ -0.26
CCDC88A-204ENST00000413716 PPP1R13LQ8WUF5 828 aa13.44□□□□□ -0.26
CCDC88A-204ENST00000413716 TMEM68Q96MH6 324 aa13.44□□□□□ -0.26
CCDC88A-204ENST00000413716 ZSCAN5AQ9BUG6 496 aa13.44□□□□□ -0.26
CCDC88A-204ENST00000413716 A0A087WZ62 844 aa13.44□□□□□ -0.26
CCDC88A-204ENST00000413716 RPL6Q02878 288 aaKnown RBP13.44□□□□□ -0.26
CCDC88A-204ENST00000413716 ACSM2AQ08AH3 577 aa13.44□□□□□ -0.26
CCDC88A-204ENST00000413716 BNIP2Q12982 314 aa13.44□□□□□ -0.26
CCDC88A-204ENST00000413716 C15orf59Q2T9L4 293 aaPredicted RBP13.44□□□□□ -0.26
CCDC88A-204ENST00000413716 ACSM2BQ68CK6 577 aa13.44□□□□□ -0.26
CCDC88A-204ENST00000413716 C16orf58Q96GQ5 468 aa13.44□□□□□ -0.26
CCDC88A-204ENST00000413716 ANKZF1Q9H8Y5 726 aa13.44□□□□□ -0.26
CCDC88A-204ENST00000413716 RNPEPL1Q9HAU8 725 aa13.44□□□□□ -0.26
CCDC88A-204ENST00000413716 A0A075B6Q4 140 aa13.44□□□□□ -0.26
CCDC88A-204ENST00000413716 CBX4O00257 560 aa13.44□□□□□ -0.26
CCDC88A-204ENST00000413716 AP2S1P53680 142 aaPredicted RBP13.44□□□□□ -0.26
CCDC88A-204ENST00000413716 CUL2Q13617 745 aa13.44□□□□□ -0.26
CCDC88A-204ENST00000413716 NKX1-1Q15270 411 aaPredicted RBP13.44□□□□□ -0.26
CCDC88A-204ENST00000413716 FRRS1Q6ZNA5 592 aa13.44□□□□□ -0.26
CCDC88A-204ENST00000413716 DHDDSQ86SQ9 333 aa13.44□□□□□ -0.26
CCDC88A-204ENST00000413716 GJD3Q8N144 294 aa13.44□□□□□ -0.26
CCDC88A-204ENST00000413716 RNF148Q8N7C7 305 aa13.44□□□□□ -0.26
CCDC88A-204ENST00000413716 ACSF2Q96CM8 615 aaPredicted RBP13.44□□□□□ -0.26
CCDC88A-204ENST00000413716 CATSPERZQ9NTU4 200 aa13.44□□□□□ -0.26
CCDC88A-204ENST00000413716 DPP3Q9NY33 737 aa13.44□□□□□ -0.26
CCDC88A-204ENST00000413716 MT-CO1P00395 513 aa13.44□□□□□ -0.26
CCDC88A-204ENST00000413716 PRLRP16471 622 aa13.44□□□□□ -0.26
CCDC88A-204ENST00000413716 ASB12Q8WXK4 309 aa13.44□□□□□ -0.26
CCDC88A-204ENST00000413716 CD101Q93033 1021 aa13.44□□□□□ -0.26
CCDC88A-204ENST00000413716 NXPE2Q96DL1 559 aa13.44□□□□□ -0.26
CCDC88A-204ENST00000413716 SMURF2Q9HAU4 748 aa13.44□□□□□ -0.26
CCDC88A-204ENST00000413716 ARL15Q9NXU5 204 aa13.44□□□□□ -0.26
CCDC88A-204ENST00000413716 CKMP06732 381 aa13.43□□□□□ -0.26
CCDC88A-204ENST00000413716 PVALBP20472 110 aaPredicted RBP13.43□□□□□ -0.26
CCDC88A-204ENST00000413716 TAF6P49848 677 aa13.43□□□□□ -0.26
CCDC88A-204ENST00000413716 CIAPIN1Q6FI81 312 aa13.43□□□□□ -0.26
CCDC88A-204ENST00000413716 TRIM40Q6P9F5 258 aa13.43□□□□□ -0.26
CCDC88A-204ENST00000413716 ELOA2Q8IYF1 753 aaPredicted RBP13.43□□□□□ -0.26
CCDC88A-204ENST00000413716 CLIP3Q96DZ5 547 aa13.43□□□□□ -0.26
CCDC88A-204ENST00000413716 TMEM47Q9BQJ4 181 aa13.43□□□□□ -0.26
CCDC88A-204ENST00000413716 SOHLH2Q9NX45 425 aa13.43□□□□□ -0.26
CCDC88A-204ENST00000413716 CORO1CQ9ULV4 474 aaPredicted RBP13.43□□□□□ -0.26
CCDC88A-204ENST00000413716 A2MP01023 1474 aa13.43□□□□□ -0.26
CCDC88A-204ENST00000413716 CDK9P50750 372 aaKnown RBP13.43□□□□□ -0.26
CCDC88A-204ENST00000413716 ALDH5A1P51649 535 aaPredicted RBP13.43□□□□□ -0.26
CCDC88A-204ENST00000413716 CCZ1BP86790 482 aa13.43□□□□□ -0.26
CCDC88A-204ENST00000413716 CCZ1P86791 482 aaPredicted RBP13.43□□□□□ -0.26
CCDC88A-204ENST00000413716 FAM92BQ6ZTR7 304 aa13.43□□□□□ -0.26
CCDC88A-204ENST00000413716 TMEM121Q9BTD3 319 aa13.43□□□□□ -0.26
CCDC88A-204ENST00000413716 SENP6Q9GZR1 1112 aaPredicted RBP13.43□□□□□ -0.26
CCDC88A-204ENST00000413716 DNMT1P26358 1616 aaKnown RBP13.43□□□□□ -0.26
CCDC88A-204ENST00000413716 A0A1B0GVC2 190 aa13.43□□□□□ -0.26
CCDC88A-204ENST00000413716 CCNDBP1O95273 360 aa13.43□□□□□ -0.26
CCDC88A-204ENST00000413716 TXNP10599 105 aaKnown RBP13.43□□□□□ -0.26
CCDC88A-204ENST00000413716 RRM1P23921 792 aa13.43□□□□□ -0.26
CCDC88A-204ENST00000413716 PKNOX1P55347 436 aa13.43□□□□□ -0.26
CCDC88A-204ENST00000413716 CYP4F8P98187 520 aa13.43□□□□□ -0.26
CCDC88A-204ENST00000413716 CRY2Q49AN0 593 aa13.43□□□□□ -0.26
CCDC88A-204ENST00000413716 ZNF227Q86WZ6 799 aa13.43□□□□□ -0.26
CCDC88A-204ENST00000413716 DSELQ8IZU8 1212 aa13.43□□□□□ -0.26
CCDC88A-204ENST00000413716 STOML3Q8TAV4 291 aa13.43□□□□□ -0.26
CCDC88A-204ENST00000413716 C1GALT1C1Q96EU7 318 aa13.43□□□□□ -0.26
CCDC88A-204ENST00000413716 DCLK1O15075 740 aa13.43□□□□□ -0.26
CCDC88A-204ENST00000413716 PGRP06401 933 aa13.43□□□□□ -0.26
CCDC88A-204ENST00000413716 RHOCP08134 193 aa13.43□□□□□ -0.26
CCDC88A-204ENST00000413716 POLR2LP62875 67 aaKnown RBP13.43□□□□□ -0.26
CCDC88A-204ENST00000413716 SORCS3Q9UPU3 1222 aa13.43□□□□□ -0.26
CCDC88A-204ENST00000413716 HSBP1L1C9JCN9 74 aa13.43□□□□□ -0.26
CCDC88A-204ENST00000413716 CPT1AP50416 773 aa13.43□□□□□ -0.26
CCDC88A-204ENST00000413716 RASGEF1BQ0VAM2 473 aa13.43□□□□□ -0.26
CCDC88A-204ENST00000413716 CRY1Q16526 586 aa13.43□□□□□ -0.26
CCDC88A-204ENST00000413716 RTL4Q6ZR62 310 aa13.43□□□□□ -0.26
CCDC88A-204ENST00000413716 NOA1Q8NC60 698 aaKnown RBP13.43□□□□□ -0.26
CCDC88A-204ENST00000413716 CIDECQ96AQ7 238 aaPredicted RBP13.43□□□□□ -0.26
CCDC88A-204ENST00000413716 SYT15Q9BQS2 421 aa13.43□□□□□ -0.26
CCDC88A-204ENST00000413716 TMEM106CQ9BVX2 250 aa13.43□□□□□ -0.26
CCDC88A-204ENST00000413716 NKIRAS2Q9NYR9 191 aa13.43□□□□□ -0.26
CCDC88A-204ENST00000413716 STMND1H3BQB6 276 aa13.43□□□□□ -0.26
CCDC88A-204ENST00000413716 PLEKP08567 350 aaPredicted RBP13.43□□□□□ -0.26
CCDC88A-204ENST00000413716 COMTD1Q86VU5 262 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms