RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 HSPA8P11142 646 aaKnown RBP5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 FCGR1AP12314 374 aa5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 PRKAR2AP13861 404 aaKnown RBP5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 ETS2P15036 469 aa5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 HOXB8P17481 243 aaPredicted RBP5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 CCNCP24863 283 aa5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 HOXC13P31276 330 aa5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 HSPA1LP34931 641 aa5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 ARCN1P48444 511 aaKnown RBP5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 CLCN3P51790 818 aa5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 ATP6V0D1P61421 351 aa5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 CRADDP78560 199 aa5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 ITGA7Q13683 1181 aa5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 LPIN1Q14693 890 aa5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 GRM3Q14832 879 aa5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 TSTD2Q5T7W7 516 aa5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 PM20D1Q6GTS8 502 aa5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 KIAA0930Q6ICG6 404 aaPredicted RBP5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 LCN8Q6JVE9 175 aa5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 PKN3Q6P5Z2 889 aa5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 SLC27A1Q6PCB7 646 aa5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 ERMP1Q7Z2K6 904 aa5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 PID1Q7Z2X4 250 aa5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 PRRT2Q7Z6L0 340 aaPredicted RBP5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 TNS4Q8IZW8 715 aa5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 DEFB106AQ8N104 65 aa5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 FSTL5Q8N475 847 aaPredicted RBP5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 MINDY1Q8N5J2 469 aa5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 LEMD2Q8NC56 503 aa5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 SPPL2BQ8TCT7 592 aa5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 C18orf25Q96B23 403 aaPredicted RBP5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 SLCO4A1Q96BD0 722 aa5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 FEM1CQ96JP0 617 aa5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 FCRL5Q96RD9 977 aa5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 LBHD1Q9BQE6 289 aaPredicted RBP5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 FDXACB1Q9BRP7 624 aaPredicted RBP5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 TRIM15Q9C019 465 aa5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 GRIP2Q9C0E4 1043 aa5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 COPS7BQ9H9Q2 264 aaPredicted RBP5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 ARNT2Q9HBZ2 717 aa5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 MAGEE1Q9HCI5 957 aa5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 WDR6Q9NNW5 1121 aaKnown RBP5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 HMX1Q9NP08 348 aaPredicted RBP5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 CNGB3Q9NQW8 809 aa5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 MAN1C1Q9NR34 630 aa5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 TREX1Q9NSU2 369 aa5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 DUS2Q9NX74 493 aaKnown RBP5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 SNTG2Q9NY99 539 aa5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 SLC17A6Q9P2U8 582 aa5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 ARHGEF37A1IGU5 675 aa5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 GABRDO14764 452 aa5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 CBFA2T3O75081 653 aa5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 PAPSS2O95340 614 aaPredicted RBP5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 EGFRP00533 1210 aa5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 FGF4P08620 206 aa5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 INSRRP14616 1297 aa5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 DPEP1P16444 411 aa5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 DCKP27707 260 aa5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 LRPAP1P30533 357 aa5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 ADRA1AP35348 466 aa5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 ADARP55265 1226 aaKnown RBP5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 NME5P56597 212 aa5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 IRF9Q00978 393 aa5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 NRG1Q02297 640 aaPredicted RBP5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 EIF4EBP2Q13542 120 aaPredicted RBP5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 CBX2Q14781 532 aaPredicted RBP5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 SV2CQ496J9 727 aa5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 TECRLQ5HYJ1 363 aa5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 FBXO47Q5MNV8 452 aa5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 PPM1LQ5SGD2 360 aa5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 C6orf10Q5SRN2 563 aa5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 DCLRE1AQ6PJP8 1040 aa5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 SPRED1Q7Z699 444 aa5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 PTRH1Q86Y79 214 aaKnown RBP5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 MICALL2Q8IY33 904 aa5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 LZTR1Q8N653 840 aa5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 HMGCLL1Q8TB92 370 aa5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 GTF3C2Q8WUA4 911 aaPredicted RBP5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 PEX13Q92968 403 aa5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 EME1Q96AY2 570 aa5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 RMND5BQ96G75 393 aaPredicted RBP5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 VPS50Q96JG6 964 aa5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 CNBD2Q96M20 576 aa5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 PLEKHG4BQ96PX9 1271 aa5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 TCF12Q99081 682 aa5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 AGAP2Q99490 1192 aa5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 IL12RB2Q99665 862 aa5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 CCT7Q99832 543 aa5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 TRIM62Q9BVG3 475 aa5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 TDRD1Q9BXT4 1180 aaKnown RBP5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 OSBPL6Q9BZF3 934 aa5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 OSBPL2Q9H1P3 480 aa5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 HIPK3Q9H422 1215 aa5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 WDR55Q9H6Y2 383 aaPredicted RBP5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 VTA1Q9NP79 307 aa5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 KLHL8Q9P2G9 620 aaPredicted RBP5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 ZNF639Q9UID6 485 aa5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 ITGB1BP2Q9UKP3 347 aa5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 CHD5Q8TDI0 1954 aa5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 MYO16Q9Y6X6 1858 aa5.79□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms