RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 GPR52Q9Y2T5 361 aa6.8□□□□□ -1.32
USP40-202ENST00000409945 MTO1Q9Y2Z2 717 aaKnown RBP6.8□□□□□ -1.32
USP40-202ENST00000409945 TTC3P53804 2025 aa6.8□□□□□ -1.32
USP40-202ENST00000409945 COL4A6Q14031 1691 aa6.8□□□□□ -1.32
USP40-202ENST00000409945 PRAMEF33A0A0G2JMD5 474 aa6.8□□□□□ -1.32
USP40-202ENST00000409945 H0YCG3 227 aa6.8□□□□□ -1.32
USP40-202ENST00000409945 PRAMEF10O60809 474 aa6.8□□□□□ -1.32
USP40-202ENST00000409945 MED24O75448 989 aa6.8□□□□□ -1.32
USP40-202ENST00000409945 RASAL1O95294 804 aa6.8□□□□□ -1.32
USP40-202ENST00000409945 NDUFA10O95299 355 aa6.8□□□□□ -1.32
USP40-202ENST00000409945 SRGAP2BP0DMP2 458 aa6.8□□□□□ -1.32
USP40-202ENST00000409945 ACRV1P26436 265 aa6.8□□□□□ -1.32
USP40-202ENST00000409945 MST1P26927 711 aa6.8□□□□□ -1.32
USP40-202ENST00000409945 ABCD1P33897 745 aa6.8□□□□□ -1.32
USP40-202ENST00000409945 DDIT3P35638 169 aa6.8□□□□□ -1.32
USP40-202ENST00000409945 LONP1P36776 959 aaKnown RBP6.8□□□□□ -1.32
USP40-202ENST00000409945 ALDH7A1P49419 539 aaKnown RBP6.8□□□□□ -1.32
USP40-202ENST00000409945 NDUFV1P49821 464 aa6.8□□□□□ -1.32
USP40-202ENST00000409945 ANXA11P50995 505 aaKnown RBP6.8□□□□□ -1.32
USP40-202ENST00000409945 DGKEP52429 567 aa6.8□□□□□ -1.32
USP40-202ENST00000409945 WNT3P56703 355 aa6.8□□□□□ -1.32
USP40-202ENST00000409945 RESTQ13127 1097 aa6.8□□□□□ -1.32
USP40-202ENST00000409945 ARHGEF7Q14155 803 aa6.8□□□□□ -1.32
USP40-202ENST00000409945 SPDYAQ5MJ70 313 aa6.8□□□□□ -1.32
USP40-202ENST00000409945 MANEALQ5VSG8 457 aa6.8□□□□□ -1.32
USP40-202ENST00000409945 ECHDC2Q86YB7 292 aa6.8□□□□□ -1.32
USP40-202ENST00000409945 THNSL1Q8IYQ7 743 aa6.8□□□□□ -1.32
USP40-202ENST00000409945 GDPD5Q8WTR4 605 aa6.8□□□□□ -1.32
USP40-202ENST00000409945 ZNF689Q96CS4 500 aaPredicted RBP6.8□□□□□ -1.32
USP40-202ENST00000409945 MRPL38Q96DV4 380 aaKnown RBP6.8□□□□□ -1.32
USP40-202ENST00000409945 RNF31Q96EP0 1072 aa6.8□□□□□ -1.32
USP40-202ENST00000409945 C17orf80Q9BSJ5 609 aa6.8□□□□□ -1.32
USP40-202ENST00000409945 NFKBIZQ9BYH8 718 aa6.8□□□□□ -1.32
USP40-202ENST00000409945 MAGEB5Q9BZ81 275 aa6.8□□□□□ -1.32
USP40-202ENST00000409945 PCDHAC1Q9H158 963 aa6.8□□□□□ -1.32
USP40-202ENST00000409945 MAGEH1Q9H213 219 aa6.8□□□□□ -1.32
USP40-202ENST00000409945 AGPAT5Q9NUQ2 364 aa6.8□□□□□ -1.32
USP40-202ENST00000409945 PRMT7Q9NVM4 692 aaPredicted RBP6.8□□□□□ -1.32
USP40-202ENST00000409945 KCND2Q9NZV8 630 aa6.8□□□□□ -1.32
USP40-202ENST00000409945 WRAP73Q9P2S5 460 aaPredicted RBP6.8□□□□□ -1.32
USP40-202ENST00000409945 KCNE5Q9UJ90 142 aa6.8□□□□□ -1.32
USP40-202ENST00000409945 MTCH2Q9Y6C9 303 aa6.8□□□□□ -1.32
USP40-202ENST00000409945 CNTNAP2Q9UHC6 1331 aa6.79□□□□□ -1.32
USP40-202ENST00000409945 SIP14410 1827 aa6.79□□□□□ -1.32
USP40-202ENST00000409945 C5orf67F2Z3F1 127 aa6.79□□□□□ -1.32
USP40-202ENST00000409945 ASNA1O43681 348 aa6.79□□□□□ -1.32
USP40-202ENST00000409945 STX6O43752 255 aa6.79□□□□□ -1.32
USP40-202ENST00000409945 SRGAP2O75044 1071 aa6.79□□□□□ -1.32
USP40-202ENST00000409945 RHOP08100 348 aa6.79□□□□□ -1.32
USP40-202ENST00000409945 ATXN1LP0C7T5 689 aaKnown RBP6.79□□□□□ -1.32
USP40-202ENST00000409945 CYP11B2P19099 503 aa6.79□□□□□ -1.32
USP40-202ENST00000409945 SYT1P21579 422 aa6.79□□□□□ -1.32
USP40-202ENST00000409945 SCP2P22307 547 aa6.79□□□□□ -1.32
USP40-202ENST00000409945 NAMPTP43490 491 aa6.79□□□□□ -1.32
USP40-202ENST00000409945 PTENP60484 403 aa6.79□□□□□ -1.32
USP40-202ENST00000409945 MXRA7P84157 204 aa6.79□□□□□ -1.32
USP40-202ENST00000409945 DGCR2P98153 550 aa6.79□□□□□ -1.32
USP40-202ENST00000409945 UBE3AQ05086 875 aa6.79□□□□□ -1.32
USP40-202ENST00000409945 DMP1Q13316 513 aaPredicted RBP6.79□□□□□ -1.32
USP40-202ENST00000409945 DRP2Q13474 957 aa6.79□□□□□ -1.32
USP40-202ENST00000409945 SPARCL1Q14515 664 aa6.79□□□□□ -1.32
USP40-202ENST00000409945 MAPK6Q16659 721 aa6.79□□□□□ -1.32
USP40-202ENST00000409945 TLDC1Q6P9B6 456 aa6.79□□□□□ -1.32
USP40-202ENST00000409945 TMPRSS6Q8IU80 811 aa6.79□□□□□ -1.32
USP40-202ENST00000409945 YAF2Q8IY57 180 aa6.79□□□□□ -1.32
USP40-202ENST00000409945 ZNF558Q96NG5 402 aa6.79□□□□□ -1.32
USP40-202ENST00000409945 DCLRE1CQ96SD1 692 aaKnown RBP6.79□□□□□ -1.32
USP40-202ENST00000409945 KRTAP4-12Q9BQ66 201 aa6.79□□□□□ -1.32
USP40-202ENST00000409945 SLC46A2Q9BY10 475 aa6.79□□□□□ -1.32
USP40-202ENST00000409945 ALOXE3Q9BYJ1 711 aa6.79□□□□□ -1.32
USP40-202ENST00000409945 REXO4Q9GZR2 422 aaKnown RBP6.79□□□□□ -1.32
USP40-202ENST00000409945 UNKLQ9H9P5 680 aaKnown RBP6.79□□□□□ -1.32
USP40-202ENST00000409945 C17orf75Q9HAS0 396 aa6.79□□□□□ -1.32
USP40-202ENST00000409945 HEYLQ9NQ87 328 aaPredicted RBP6.79□□□□□ -1.32
USP40-202ENST00000409945 RALGAPA2Q2PPJ7 1873 aa6.79□□□□□ -1.32
USP40-202ENST00000409945 A0A1W2PS29 197 aa6.78□□□□□ -1.32
USP40-202ENST00000409945 SPDEFO95238 335 aa6.78□□□□□ -1.32
USP40-202ENST00000409945 CSTBP04080 98 aaKnown RBP6.78□□□□□ -1.32
USP40-202ENST00000409945 C1SP09871 688 aa6.78□□□□□ -1.32
USP40-202ENST00000409945 PAX3P23760 479 aa6.78□□□□□ -1.32
USP40-202ENST00000409945 ARL2P36404 184 aa6.78□□□□□ -1.32
USP40-202ENST00000409945 SELENOPP49908 381 aa6.78□□□□□ -1.32
USP40-202ENST00000409945 RENBPP51606 427 aa6.78□□□□□ -1.32
USP40-202ENST00000409945 LOXL3P58215 753 aa6.78□□□□□ -1.32
USP40-202ENST00000409945 MRPS5P82675 430 aaKnown RBP6.78□□□□□ -1.32
USP40-202ENST00000409945 PLP2Q04941 152 aa6.78□□□□□ -1.32
USP40-202ENST00000409945 ZNF750Q32MQ0 723 aa6.78□□□□□ -1.32
USP40-202ENST00000409945 FBXO38Q6PIJ6 1188 aa6.78□□□□□ -1.32
USP40-202ENST00000409945 C4orf32Q8N8J7 132 aa6.78□□□□□ -1.32
USP40-202ENST00000409945 SLC30A5Q8TAD4 765 aa6.78□□□□□ -1.32
USP40-202ENST00000409945 LRFN1Q9P244 771 aa6.78□□□□□ -1.32
USP40-202ENST00000409945 ARID2Q68CP9 1835 aa6.78□□□□□ -1.32
USP40-202ENST00000409945 PTPRSQ13332 1948 aa6.78□□□□□ -1.32
USP40-202ENST00000409945 CCDC169A6NNP5 214 aa6.78□□□□□ -1.32
USP40-202ENST00000409945 VWC2LB2RUY7 222 aa6.78□□□□□ -1.32
USP40-202ENST00000409945 K7ERI5 159 aa6.78□□□□□ -1.32
USP40-202ENST00000409945 TRIM24O15164 1050 aa6.78□□□□□ -1.32
USP40-202ENST00000409945 PPM1DO15297 605 aa6.78□□□□□ -1.32
USP40-202ENST00000409945 CSDE1O75534 798 aaKnown RBP6.78□□□□□ -1.32
USP40-202ENST00000409945 TPH1P17752 444 aa6.78□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms